Wall clock time and date at job start Mon Mar 30 2020 00:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 119.99820 * 2 1 4 4 H 1.48507 * 109.46915 * 269.99681 * 3 2 1 5 5 H 1.48494 * 109.47283 * 29.99570 * 3 2 1 6 6 H 1.48506 * 109.47422 * 150.00056 * 3 2 1 7 7 C 1.38801 * 120.00277 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00044 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99964 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00232 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47401 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47242 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47070 * 180.02562 * 12 11 10 14 14 C 1.34234 * 116.99938 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 12 17 17 N 1.46497 * 109.47128 * 180.02562 * 16 14 13 18 18 C 1.34943 * 126.03868 * 125.00304 * 17 16 14 19 19 C 1.35318 * 107.74756 * 179.97438 * 18 17 16 20 20 C 1.39869 * 107.91874 * 359.97438 * 19 18 17 21 21 N 1.30838 * 108.20133 * 359.73987 * 20 19 18 22 22 H 0.96994 * 120.00112 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46764 * 60.00066 * 10 9 7 24 24 H 1.08999 * 109.47096 * 300.00054 * 10 9 7 25 25 H 1.08998 * 109.46945 * 59.99571 * 11 10 9 26 26 H 1.08999 * 109.47046 * 300.00093 * 11 10 9 27 27 H 1.08996 * 109.47090 * 59.99784 * 12 11 10 28 28 H 1.08999 * 109.47084 * 299.99957 * 12 11 10 29 29 H 1.09004 * 109.46932 * 300.00373 * 16 14 13 30 30 H 1.08997 * 109.47392 * 59.99712 * 16 14 13 31 31 H 1.08004 * 126.12840 * 359.94912 * 18 17 16 32 32 H 1.07995 * 126.03848 * 179.97438 * 19 18 17 33 33 H 1.07997 * 125.89826 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8914 0.0005 11 6 1.9795 -5.3242 0.0012 12 6 3.1516 -6.3077 0.0018 13 8 2.6425 -7.6674 0.0018 14 6 3.5489 -8.6575 0.0018 15 8 4.7286 -8.3966 0.0023 16 6 3.0950 -10.0946 0.0024 17 7 4.2650 -10.9762 0.0029 18 6 4.5224 -11.9534 0.8972 19 6 5.6948 -12.5326 0.5493 20 6 6.1700 -11.8875 -0.5971 21 7 5.3108 -10.9583 -0.9290 22 1 -0.4850 0.8400 0.0004 23 1 3.1246 -3.7313 0.8906 24 1 3.1246 -3.7313 -0.8894 25 1 1.3706 -5.4846 -0.8885 26 1 1.3712 -5.4840 0.8914 27 1 3.7601 -6.1471 0.8918 28 1 3.7603 -6.1480 -0.8882 29 1 2.4959 -10.2860 0.8927 30 1 2.4953 -10.2866 -0.8872 31 1 3.9036 -12.2245 1.7398 32 1 6.1782 -13.3487 1.0657 33 1 7.0855 -12.1196 -1.1209 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805356646.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:11 Heat of formation + Delta-G solvation = -35.992943 kcal Electronic energy + Delta-G solvation = -16996.571486 eV Core-core repulsion = 13956.656328 eV Total energy + Delta-G solvation = -3039.915158 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.23327 -41.33755 -37.95388 -35.00962 -34.61600 -34.36084 -31.04405 -29.30963 -27.98240 -27.17099 -23.30079 -22.67072 -22.01175 -21.40979 -19.61177 -18.89827 -18.33411 -17.93294 -17.39117 -16.91562 -16.33540 -16.14066 -15.59290 -15.19742 -14.81675 -14.59806 -14.21119 -14.06391 -13.83884 -13.65206 -13.24167 -13.16639 -12.96291 -12.65739 -12.43503 -12.43035 -11.90615 -11.57765 -11.56696 -11.48005 -11.16771 -10.43944 -10.38756 -9.55957 -8.70044 -8.40049 -6.16565 0.77889 1.01346 1.24472 1.33899 1.38354 1.47427 1.62663 1.88874 1.99129 2.25110 2.94504 3.24666 3.46060 3.69010 3.80549 3.93379 4.04936 4.10784 4.13470 4.21421 4.28189 4.46580 4.65149 4.69109 4.90330 4.98618 5.07110 5.15684 5.34412 5.38138 5.69480 6.06601 6.15851 6.57152 6.75756 7.02560 8.69261 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.062913 B = 0.002515 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.951009 B =11131.378376 C =11436.809537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.016 3.984 3 Si 0.994 3.006 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.264 1.264 7 C -0.542 4.542 8 H 0.073 0.927 9 S -0.181 6.181 10 C -0.093 4.093 11 C -0.084 4.084 12 C 0.083 3.917 13 O -0.350 6.350 14 C 0.443 3.557 15 O -0.526 6.526 16 C 0.148 3.852 17 N -0.384 5.384 18 C 0.061 3.939 19 C -0.282 4.282 20 C 0.032 3.968 21 N -0.332 5.332 22 H 0.272 0.728 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.081 0.919 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.187 0.813 30 H 0.150 0.850 31 H 0.220 0.780 32 H 0.173 0.827 33 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.350 -25.340 2.733 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.189 4.189 3 Si 0.816 3.184 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.189 1.189 7 C -0.690 4.690 8 H 0.091 0.909 9 S 0.048 5.952 10 C -0.242 4.242 11 C -0.123 4.123 12 C 0.008 3.992 13 O -0.266 6.266 14 C 0.285 3.715 15 O -0.414 6.414 16 C 0.025 3.975 17 N -0.169 5.169 18 C -0.083 4.083 19 C -0.311 4.311 20 C -0.154 4.154 21 N -0.153 5.153 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.205 0.795 30 H 0.167 0.833 31 H 0.236 0.764 32 H 0.190 0.810 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 4.998 -24.272 1.914 24.855 hybrid contribution 2.149 0.991 0.396 2.400 sum 7.147 -23.281 2.310 24.463 Atomic orbital electron populations 1.70134 1.07594 1.28657 1.47793 1.26053 0.96062 1.03069 0.93706 0.85018 0.78155 0.76421 0.78831 1.19316 1.19778 1.18865 1.23048 0.94805 0.92013 1.59088 0.90919 1.84580 1.12894 1.00710 1.97057 1.23077 1.00867 0.96766 1.03520 1.21101 0.96868 0.89534 1.04761 1.23001 0.96694 0.76874 1.02647 1.86437 1.40019 1.16472 1.83669 1.24442 0.84619 0.90025 0.72403 1.90747 1.20171 1.85105 1.45394 1.21412 0.84839 0.80052 1.11155 1.48380 1.18699 1.27602 1.22190 1.23345 0.98922 0.90116 0.95895 1.21936 0.98995 1.08344 1.01839 1.24446 0.99608 0.93607 0.97779 1.77443 0.99307 1.23254 1.15304 0.91852 0.91439 0.91610 0.90047 0.89749 0.90998 0.91458 0.79550 0.83263 0.76382 0.80999 0.78409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.19 13.22 21.65 0.29 -53.90 16 2 C 0.02 0.92 5.49 84.86 0.47 1.39 16 3 Si 0.99 43.84 29.55 68.60 2.03 45.87 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 6 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 7 C -0.54 -31.14 9.50 67.95 0.65 -30.50 16 8 H 0.07 4.04 7.80 -2.91 -0.02 4.02 16 9 S -0.18 -9.47 21.44 -56.49 -1.21 -10.68 16 10 C -0.09 -3.67 5.67 71.98 0.41 -3.26 16 11 C -0.08 -2.60 5.60 30.59 0.17 -2.43 16 12 C 0.08 2.29 5.47 71.98 0.39 2.68 16 13 O -0.35 -8.39 10.22 -51.46 -0.53 -8.91 16 14 C 0.44 10.32 7.99 71.24 0.57 10.89 16 15 O -0.53 -17.12 15.47 21.98 0.34 -16.78 16 16 C 0.15 1.88 7.10 85.63 0.61 2.49 16 17 N -0.38 -7.08 3.39 -351.80 -1.19 -8.28 16 18 C 0.06 0.76 11.45 83.54 0.96 1.72 16 19 C -0.28 -4.04 10.80 21.99 0.24 -3.80 16 20 C 0.03 0.63 12.03 85.24 1.02 1.65 16 21 N -0.33 -8.45 11.66 -57.03 -0.67 -9.12 16 22 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 23 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 24 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 25 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 28 H 0.07 1.92 8.13 -2.39 -0.02 1.90 16 29 H 0.19 0.50 8.07 -2.38 -0.02 0.48 16 30 H 0.15 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.22 0.54 8.06 -2.91 -0.02 0.52 16 32 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.20 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -79.88 312.71 5.64 -74.24 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 1.10 Total: 6.71 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: 5.48 Total: -19.16 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -1.57 Total: -71.29 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: -0.19 Total: -25.69 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -9.47 SS G_CDS: -1.21 Total: -10.68 kcal Total: -79.88 5.64 -74.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805356646.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.251 kcal (2) G-P(sol) polarization free energy of solvation -79.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds