Wall clock time and date at job start Mon Mar 30 2020 01:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35355 * 126.37586 * 2 1 4 4 C 1.41550 * 105.49871 * 180.02562 * 3 2 1 5 5 C 1.47583 * 126.52040 * 179.97438 * 4 3 2 6 6 O 1.21485 * 120.00085 * 0.02562 * 5 4 3 7 7 O 1.34729 * 119.99683 * 180.02562 * 5 4 3 8 8 C 1.45206 * 116.99812 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46777 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.46997 * 180.02562 * 9 8 7 11 11 S 1.80994 * 109.47387 * 180.02562 * 10 9 8 12 12 C 1.76194 * 100.00276 * 179.97438 * 11 10 9 13 13 H 1.08011 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.38801 * 120.00539 * 179.97438 * 12 11 10 15 15 N 1.31631 * 119.99522 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00399 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46904 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47412 * 120.00117 * 16 14 12 19 19 H 1.48502 * 109.47207 * 240.00174 * 16 14 12 20 20 N 1.31849 * 106.95269 * 0.22904 * 4 3 2 21 21 N 1.28471 * 110.06632 * 359.61550 * 20 4 3 22 22 H 0.96997 * 124.88083 * 180.16157 * 21 20 4 23 23 H 1.08996 * 109.47772 * 90.00071 * 1 2 3 24 24 H 1.08998 * 109.46935 * 210.00040 * 1 2 3 25 25 H 1.09006 * 109.47312 * 329.99821 * 1 2 3 26 26 H 1.07994 * 127.24913 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47070 * 300.00016 * 8 7 5 28 28 H 1.09001 * 109.46626 * 60.00033 * 8 7 5 29 29 H 1.09000 * 109.47486 * 299.99948 * 9 8 7 30 30 H 1.09001 * 109.47362 * 60.00671 * 9 8 7 31 31 H 1.09000 * 109.46866 * 300.00212 * 10 9 8 32 32 H 1.08996 * 109.47261 * 59.99820 * 10 9 8 33 33 H 0.96995 * 119.99998 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0898 0.0000 4 6 3.6323 0.5854 -0.0006 5 6 4.8756 1.3806 -0.0014 6 8 4.8204 2.5942 -0.0011 7 8 6.0717 0.7605 -0.0024 8 6 7.2523 1.6058 -0.0026 9 6 8.5067 0.7298 -0.0032 10 6 9.7508 1.6204 -0.0026 11 16 11.2347 0.5842 -0.0041 12 6 12.4791 1.8316 -0.0040 13 1 12.1983 2.8745 -0.0036 14 6 13.8203 1.4741 -0.0045 15 7 14.1625 0.2031 -0.0054 16 14 15.1395 2.7966 -0.0036 17 1 14.4977 4.1358 -0.0032 18 1 15.9848 2.6518 1.2086 19 1 15.9845 2.6536 -1.2164 20 7 3.5420 -0.7300 -0.0060 21 7 2.3080 -1.0872 -0.0006 22 1 1.9964 -2.0058 -0.0007 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 2.0052 2.1259 0.0004 27 1 7.2481 2.2357 -0.8921 28 1 7.2491 2.2345 0.8879 29 1 8.5107 0.1002 0.8867 30 1 8.5102 0.1007 -0.8934 31 1 9.7470 2.2503 -0.8922 32 1 9.7472 2.2492 0.8877 33 1 15.0997 -0.0468 -0.0061 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805420441.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:29 Heat of formation + Delta-G solvation = -30.480730 kcal Electronic energy + Delta-G solvation = -16924.082178 eV Core-core repulsion = 13884.406047 eV Total energy + Delta-G solvation = -3039.676131 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.06575 -40.10812 -36.61149 -33.55174 -33.10738 -32.41864 -32.25804 -27.63136 -26.81494 -25.53824 -24.37359 -21.66876 -21.27302 -20.44595 -18.15788 -17.52920 -17.14312 -16.70790 -16.47172 -15.91695 -14.79573 -14.49406 -14.35999 -14.27526 -13.70576 -13.48891 -13.37048 -12.81859 -12.70048 -12.65156 -12.07034 -11.30560 -11.19860 -11.11444 -10.94611 -10.90179 -10.75608 -10.59928 -10.21974 -9.82128 -9.59872 -9.36478 -9.05817 -8.31168 -6.52952 -6.22154 -3.92691 1.13625 1.64854 2.26933 2.74952 3.00786 3.22612 3.24653 3.31853 3.57898 4.14166 4.21493 4.22932 4.55264 4.95509 5.03520 5.13818 5.14220 5.19015 5.24390 5.30976 5.43355 5.47363 5.55551 5.83641 5.88569 5.99934 6.21600 6.44465 6.51321 6.55387 6.73116 7.39822 7.62146 7.79197 8.37942 9.24298 10.86090 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.067586 B = 0.002559 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.187371 B =10938.295713 C =11321.432629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.011 3.989 3 C -0.174 4.174 4 C 0.004 3.996 5 C 0.553 3.447 6 O -0.501 6.501 7 O -0.340 6.340 8 C 0.072 3.928 9 C -0.098 4.098 10 C -0.114 4.114 11 S -0.125 6.125 12 C -0.517 4.517 13 H 0.074 0.926 14 C 0.070 3.930 15 N -0.869 5.869 16 Si 0.920 3.080 17 H -0.271 1.271 18 H -0.280 1.280 19 H -0.280 1.280 20 N -0.226 5.226 21 N -0.377 5.377 22 H 0.447 0.553 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.166 0.834 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.711 -1.734 0.013 27.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.114 4.114 3 C -0.201 4.201 4 C -0.155 4.155 5 C 0.395 3.605 6 O -0.387 6.387 7 O -0.255 6.255 8 C -0.003 4.003 9 C -0.136 4.136 10 C -0.262 4.262 11 S 0.103 5.897 12 C -0.665 4.665 13 H 0.092 0.908 14 C -0.139 4.139 15 N -0.505 5.505 16 Si 0.746 3.254 17 H -0.196 1.196 18 H -0.206 1.206 19 H -0.206 1.206 20 N -0.063 5.063 21 N -0.093 5.093 22 H 0.292 0.708 23 H 0.099 0.901 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.184 0.816 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -26.718 -3.511 0.009 26.948 hybrid contribution 0.220 2.445 0.000 2.455 sum -26.498 -1.065 0.009 26.519 Atomic orbital electron populations 1.20374 0.86180 1.04199 1.03597 1.21505 0.95622 0.86958 1.07273 1.21517 0.89737 1.00088 1.08794 1.20835 0.92661 0.89779 1.12228 1.19519 0.82828 0.85310 0.72869 1.90861 1.87735 1.14012 1.46077 1.86617 1.14352 1.41436 1.83079 1.23338 0.81219 0.92961 1.02747 1.21282 0.89836 0.98059 1.04436 1.23179 0.98073 1.01616 1.03364 1.84669 0.95207 1.12915 1.96864 1.22745 0.91946 0.93363 1.58425 0.90778 1.25029 0.98033 0.96218 0.94596 1.70032 1.17756 1.15425 1.47297 0.86088 0.80548 0.80870 0.77862 1.19572 1.20571 1.20576 1.73807 1.00957 1.14836 1.16735 1.43469 1.02979 1.09852 1.53005 0.70760 0.90064 0.90891 0.89321 0.81599 0.90941 0.90947 0.90289 0.90286 0.91697 0.91692 0.92336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.23 10.44 36.00 0.38 0.14 16 2 C 0.01 0.08 7.23 -82.21 -0.59 -0.52 16 3 C -0.17 -1.71 10.73 -39.35 -0.42 -2.13 16 4 C 0.00 0.05 7.17 -82.79 -0.59 -0.55 16 5 C 0.55 8.45 7.97 34.54 0.28 8.73 16 6 O -0.50 -8.40 16.72 -19.25 -0.32 -8.72 16 7 O -0.34 -5.41 10.23 -40.57 -0.42 -5.83 16 8 C 0.07 1.12 5.48 37.16 0.20 1.33 16 9 C -0.10 -1.69 5.60 -26.73 -0.15 -1.84 16 10 C -0.11 -2.33 5.67 37.16 0.21 -2.12 16 11 S -0.12 -3.30 21.44 -107.50 -2.30 -5.61 16 12 C -0.52 -14.94 9.50 30.94 0.29 -14.65 16 13 H 0.07 2.08 7.80 -52.48 -0.41 1.67 16 14 C 0.07 2.01 5.49 -17.43 -0.10 1.92 16 15 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 16 Si 0.92 21.75 29.55 -169.99 -5.02 16.72 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 N -0.23 -2.69 12.24 33.41 0.41 -2.28 16 21 N -0.38 -2.82 6.83 33.50 0.23 -2.59 16 22 H 0.45 1.56 8.96 -190.44 -1.71 -0.14 16 23 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 24 H 0.07 0.08 8.14 -51.93 -0.42 -0.34 16 25 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 27 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 32 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 33 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 313.21 15.07 4.72 4.72 Total: -1.00 -35.07 313.21 -7.95 -43.01 By element: Atomic # 1 Polarization: 1.17 SS G_CDS: -5.48 Total: -4.31 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -0.50 Total: -9.68 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 1.37 Total: -30.30 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.74 Total: -14.55 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -3.30 SS G_CDS: -2.30 Total: -5.61 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -35.07 -7.95 -43.01 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805420441.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.533 kcal (2) G-P(sol) polarization free energy of solvation -35.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds