Wall clock time and date at job start Mon Mar 30 2020 01:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35355 * 126.37586 * 2 1 4 4 C 1.41550 * 105.49871 * 180.02562 * 3 2 1 5 5 C 1.47583 * 126.52040 * 179.97438 * 4 3 2 6 6 O 1.21485 * 120.00085 * 0.02562 * 5 4 3 7 7 O 1.34729 * 119.99683 * 180.02562 * 5 4 3 8 8 C 1.45206 * 116.99812 * 180.02562 * 7 5 4 9 9 C 1.52999 * 109.46777 * 179.97438 * 8 7 5 10 10 C 1.53006 * 109.46997 * 180.02562 * 9 8 7 11 11 S 1.80994 * 109.47387 * 180.02562 * 10 9 8 12 12 C 1.76194 * 100.00276 * 179.97438 * 11 10 9 13 13 H 1.08011 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.38801 * 120.00539 * 179.97438 * 12 11 10 15 15 N 1.31631 * 119.99522 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00399 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.46904 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47412 * 120.00117 * 16 14 12 19 19 H 1.48502 * 109.47207 * 240.00174 * 16 14 12 20 20 N 1.31849 * 106.95269 * 0.22904 * 4 3 2 21 21 N 1.28471 * 110.06632 * 359.61550 * 20 4 3 22 22 H 0.96997 * 124.88083 * 180.16157 * 21 20 4 23 23 H 1.08996 * 109.47772 * 90.00071 * 1 2 3 24 24 H 1.08998 * 109.46935 * 210.00040 * 1 2 3 25 25 H 1.09006 * 109.47312 * 329.99821 * 1 2 3 26 26 H 1.07994 * 127.24913 * 0.02562 * 3 2 1 27 27 H 1.09000 * 109.47070 * 300.00016 * 8 7 5 28 28 H 1.09001 * 109.46626 * 60.00033 * 8 7 5 29 29 H 1.09000 * 109.47486 * 299.99948 * 9 8 7 30 30 H 1.09001 * 109.47362 * 60.00671 * 9 8 7 31 31 H 1.09000 * 109.46866 * 300.00212 * 10 9 8 32 32 H 1.08996 * 109.47261 * 59.99820 * 10 9 8 33 33 H 0.96995 * 119.99998 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0898 0.0000 4 6 3.6323 0.5854 -0.0006 5 6 4.8756 1.3806 -0.0014 6 8 4.8204 2.5942 -0.0011 7 8 6.0717 0.7605 -0.0024 8 6 7.2523 1.6058 -0.0026 9 6 8.5067 0.7298 -0.0032 10 6 9.7508 1.6204 -0.0026 11 16 11.2347 0.5842 -0.0041 12 6 12.4791 1.8316 -0.0040 13 1 12.1983 2.8745 -0.0036 14 6 13.8203 1.4741 -0.0045 15 7 14.1625 0.2031 -0.0054 16 14 15.1395 2.7966 -0.0036 17 1 14.4977 4.1358 -0.0032 18 1 15.9848 2.6518 1.2086 19 1 15.9845 2.6536 -1.2164 20 7 3.5420 -0.7300 -0.0060 21 7 2.3080 -1.0872 -0.0006 22 1 1.9964 -2.0058 -0.0007 23 1 -0.3634 0.0000 -1.0276 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5139 26 1 2.0052 2.1259 0.0004 27 1 7.2481 2.2357 -0.8921 28 1 7.2491 2.2345 0.8879 29 1 8.5107 0.1002 0.8867 30 1 8.5102 0.1007 -0.8934 31 1 9.7470 2.2503 -0.8922 32 1 9.7472 2.2492 0.8877 33 1 15.0997 -0.0468 -0.0061 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805420441.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:28 Heat of formation + Delta-G solvation = -53.501807 kcal Electronic energy + Delta-G solvation = -16925.080447 eV Core-core repulsion = 13884.406047 eV Total energy + Delta-G solvation = -3040.674400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.79543 -41.30847 -37.86061 -34.95253 -34.58910 -33.73619 -33.03611 -28.49659 -27.93489 -27.54371 -25.51909 -22.74933 -22.33438 -21.50938 -19.57157 -18.94776 -18.17162 -17.86898 -17.60815 -16.90305 -16.75813 -16.15449 -15.84589 -15.04675 -14.86766 -14.31200 -14.15276 -14.11981 -13.80341 -13.68901 -13.16856 -13.10539 -12.96401 -12.62554 -12.42707 -12.42206 -12.04212 -11.91248 -11.55165 -11.48230 -11.16177 -10.60701 -10.36158 -10.00928 -8.68846 -8.38334 -6.15094 0.15435 1.01168 1.20722 1.36291 1.38914 1.51071 1.74366 1.98320 2.08491 2.26908 2.96151 3.22605 3.32486 3.72599 3.83362 3.94199 3.95500 4.14718 4.30520 4.32122 4.48295 4.55078 4.67155 4.82852 4.99683 4.99925 5.05845 5.11596 5.28434 5.31717 5.40157 6.03476 6.18026 6.49309 6.81016 7.04053 8.71395 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.067586 B = 0.002559 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 414.187371 B =10938.295713 C =11321.432629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.037 3.963 3 C -0.194 4.194 4 C -0.029 4.029 5 C 0.552 3.448 6 O -0.523 6.523 7 O -0.349 6.349 8 C 0.079 3.921 9 C -0.086 4.086 10 C -0.090 4.090 11 S -0.188 6.188 12 C -0.538 4.538 13 H 0.075 0.925 14 C 0.014 3.986 15 N -0.907 5.907 16 Si 0.997 3.003 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.271 1.271 20 N -0.256 5.256 21 N -0.358 5.358 22 H 0.464 0.536 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.098 0.902 26 H 0.174 0.826 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.620 -1.210 0.022 29.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.221 4.221 4 C -0.186 4.186 5 C 0.395 3.605 6 O -0.411 6.411 7 O -0.264 6.264 8 C 0.004 3.996 9 C -0.124 4.124 10 C -0.239 4.239 11 S 0.041 5.959 12 C -0.686 4.686 13 H 0.093 0.907 14 C -0.191 4.191 15 N -0.544 5.544 16 Si 0.819 3.181 17 H -0.186 1.186 18 H -0.196 1.196 19 H -0.197 1.197 20 N -0.094 5.094 21 N -0.078 5.078 22 H 0.313 0.687 23 H 0.115 0.885 24 H 0.114 0.886 25 H 0.117 0.883 26 H 0.192 0.808 27 H 0.097 0.903 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.643 -3.013 0.018 28.801 hybrid contribution 0.626 2.202 -0.004 2.290 sum -28.017 -0.811 0.014 28.028 Atomic orbital electron populations 1.20588 0.82632 1.05893 1.05073 1.22082 0.97306 0.85561 1.03917 1.21775 0.88842 1.01507 1.09987 1.20781 0.92572 0.90451 1.14771 1.19946 0.83073 0.85415 0.72024 1.90830 1.87968 1.14898 1.47409 1.86603 1.14776 1.41699 1.83317 1.23148 0.80640 0.92398 1.03440 1.21097 0.89337 0.97637 1.04353 1.23054 0.96042 1.00922 1.03868 1.84672 0.98553 1.15632 1.97063 1.23086 0.93012 0.93653 1.58854 0.90691 1.26097 1.00519 0.98754 0.93746 1.70159 1.18583 1.17652 1.47973 0.84929 0.77137 0.77776 0.78288 1.18648 1.19649 1.19660 1.73710 1.03205 1.14527 1.17997 1.43577 1.01944 1.11144 1.51095 0.68656 0.88512 0.88564 0.88285 0.80833 0.90286 0.90291 0.90416 0.90414 0.91115 0.91106 0.91912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.14 10.44 71.23 0.74 0.61 16 2 C 0.04 0.42 7.23 41.40 0.30 0.72 16 3 C -0.19 -3.59 10.73 22.42 0.24 -3.35 16 4 C -0.03 -0.75 7.17 42.43 0.30 -0.45 16 5 C 0.55 17.08 7.97 70.29 0.56 17.64 16 6 O -0.52 -17.74 16.72 19.88 0.33 -17.41 16 7 O -0.35 -11.18 10.23 -56.39 -0.58 -11.76 16 8 C 0.08 2.42 5.48 71.98 0.39 2.82 16 9 C -0.09 -2.95 5.60 30.60 0.17 -2.78 16 10 C -0.09 -3.69 5.67 71.98 0.41 -3.28 16 11 S -0.19 -10.15 21.44 -56.49 -1.21 -11.36 16 12 C -0.54 -31.42 9.50 67.95 0.65 -30.77 16 13 H 0.07 4.21 7.80 -2.90 -0.02 4.19 16 14 C 0.01 0.79 5.49 84.86 0.47 1.26 16 15 N -0.91 -55.25 13.22 21.65 0.29 -54.96 16 16 Si 1.00 44.43 29.55 68.60 2.03 46.46 16 17 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 18 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 20 N -0.26 -5.93 12.24 -48.22 -0.59 -6.52 16 21 N -0.36 -4.66 6.83 -47.93 -0.33 -4.99 16 22 H 0.46 2.11 8.96 -219.99 -1.97 0.13 16 23 H 0.10 -0.03 8.14 -2.39 -0.02 -0.05 16 24 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 25 H 0.10 0.05 8.14 -2.38 -0.02 0.03 16 26 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 27 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.08 2.32 8.14 -2.39 -0.02 2.31 16 29 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.07 2.81 8.14 -2.40 -0.02 2.79 16 32 H 0.07 2.81 8.14 -2.40 -0.02 2.79 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -76.92 313.21 3.33 -73.59 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -0.84 Total: 4.52 kcal Atomic # 6 Polarization: -21.81 SS G_CDS: 4.23 Total: -17.58 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -0.63 Total: -66.46 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.24 Total: -29.17 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: -10.15 SS G_CDS: -1.21 Total: -11.36 kcal Total: -76.92 3.33 -73.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805420441.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.085 kcal (2) G-P(sol) polarization free energy of solvation -76.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds