Wall clock time and date at job start Mon Mar 30 2020 02:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35041 * 124.88247 * 2 1 4 4 C 1.35350 * 107.24345 * 179.70454 * 3 2 1 5 5 C 1.41547 * 105.50012 * 0.41552 * 4 3 2 6 6 C 1.47579 * 126.52355 * 179.84569 * 5 4 3 7 7 O 1.21485 * 120.00265 * 359.71042 * 6 5 4 8 8 O 1.34735 * 119.99809 * 179.71258 * 6 5 4 9 9 C 1.45196 * 116.99802 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47070 * 179.97438 * 9 8 6 11 11 C 1.53007 * 109.47067 * 180.02562 * 10 9 8 12 12 S 1.81003 * 109.46911 * 180.02562 * 11 10 9 13 13 C 1.76204 * 99.99814 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00095 * 359.97438 * 13 12 11 15 15 C 1.38801 * 119.99862 * 179.97438 * 13 12 11 16 16 N 1.31635 * 119.99988 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99900 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46875 * 90.00058 * 17 15 13 19 19 H 1.48494 * 109.47127 * 209.99911 * 17 15 13 20 20 H 1.48500 * 109.46962 * 330.00148 * 17 15 13 21 21 N 1.28467 * 124.87780 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47440 * 270.00060 * 1 2 3 23 23 H 1.08997 * 109.46943 * 29.99601 * 1 2 3 24 24 H 1.08995 * 109.47317 * 149.99996 * 1 2 3 25 25 H 1.08002 * 126.37686 * 0.02562 * 3 2 1 26 26 H 1.07998 * 127.25062 * 180.25990 * 4 3 2 27 27 H 1.08996 * 109.47465 * 300.00044 * 9 8 6 28 28 H 1.08999 * 109.47008 * 60.00054 * 9 8 6 29 29 H 1.08998 * 109.47592 * 300.00297 * 10 9 8 30 30 H 1.09007 * 109.46935 * 60.00470 * 10 9 8 31 31 H 1.09004 * 109.47191 * 299.99781 * 11 10 9 32 32 H 1.08999 * 109.47130 * 60.00075 * 11 10 9 33 33 H 0.96994 * 119.99817 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1078 0.0000 4 6 3.5271 0.6976 0.0067 5 6 3.4744 -0.7168 0.0007 6 6 4.6267 -1.6388 0.0013 7 8 5.7583 -1.1968 0.0020 8 8 4.4238 -2.9707 0.0010 9 6 5.6035 -3.8172 0.0010 10 6 5.1769 -5.2865 0.0012 11 6 6.4200 -6.1785 0.0019 12 16 5.9153 -7.9168 0.0014 13 6 7.4964 -8.6944 0.0015 14 1 8.3938 -8.0935 0.0014 15 6 7.5886 -10.0794 0.0018 16 7 6.4949 -10.8118 0.0015 17 14 9.2649 -10.9039 0.0026 18 1 9.7084 -11.1221 1.4029 19 1 9.1742 -12.2104 -0.6972 20 1 10.2444 -10.0344 -0.6971 21 7 2.1996 -1.0539 0.0005 22 1 -0.3634 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8899 -0.5138 25 1 1.8903 2.1305 0.0004 26 1 4.4106 1.3188 0.0125 27 1 6.1984 -3.6114 -0.8888 28 1 6.1981 -3.6118 0.8911 29 1 4.5822 -5.4921 0.8912 30 1 4.5821 -5.4923 -0.8888 31 1 7.0151 -5.9732 -0.8880 32 1 7.0145 -5.9726 0.8920 33 1 6.5593 -11.7796 0.0020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805542686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:41 Heat of formation + Delta-G solvation = -15.621550 kcal Electronic energy + Delta-G solvation = -16990.735011 eV Core-core repulsion = 13951.703222 eV Total energy + Delta-G solvation = -3039.031788 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.97371 -40.08337 -36.59416 -33.91332 -33.35168 -32.41120 -31.12543 -28.30358 -26.46015 -25.43720 -23.61279 -21.83002 -21.26105 -20.43692 -18.08555 -17.46897 -17.18091 -16.83144 -16.24671 -16.21954 -14.79143 -14.54038 -14.42321 -14.23277 -13.74534 -13.32476 -13.29276 -13.03473 -12.65477 -12.63400 -12.06420 -11.29664 -11.20878 -11.09756 -10.93094 -10.89846 -10.73720 -10.60021 -10.20312 -9.63645 -9.60091 -9.44610 -9.04607 -8.31263 -6.52580 -6.21670 -3.92308 1.18006 1.74758 2.01383 2.68709 3.05267 3.23778 3.24872 3.31218 3.58515 3.99772 4.23154 4.39374 4.58089 4.62181 4.90122 4.98904 5.14250 5.20164 5.25584 5.26757 5.36453 5.45428 5.56567 5.84488 5.89695 6.04119 6.22783 6.35003 6.46532 6.52059 6.73865 7.45787 7.62224 7.83887 8.38110 9.24641 10.86540 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.049469 B = 0.002686 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.871361 B =10423.274445 C =10958.094174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.283 5.283 3 C -0.021 4.021 4 C -0.174 4.174 5 C -0.004 4.004 6 C 0.554 3.446 7 O -0.502 6.502 8 O -0.340 6.340 9 C 0.072 3.928 10 C -0.098 4.098 11 C -0.114 4.114 12 S -0.125 6.125 13 C -0.517 4.517 14 H 0.074 0.926 15 C 0.071 3.929 16 N -0.870 5.870 17 Si 0.920 3.080 18 H -0.277 1.277 19 H -0.282 1.282 20 H -0.272 1.272 21 N -0.231 5.231 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.186 0.814 26 H 0.166 0.834 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.039 24.504 -0.050 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.072 5.072 3 C -0.162 4.162 4 C -0.202 4.202 5 C -0.162 4.162 6 C 0.396 3.604 7 O -0.389 6.389 8 O -0.255 6.255 9 C -0.003 4.003 10 C -0.136 4.136 11 C -0.262 4.262 12 S 0.104 5.896 13 C -0.665 4.665 14 H 0.092 0.908 15 C -0.138 4.138 16 N -0.505 5.505 17 Si 0.746 3.254 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.197 1.197 21 N -0.068 5.068 22 H 0.106 0.894 23 H 0.116 0.884 24 H 0.118 0.882 25 H 0.203 0.797 26 H 0.184 0.816 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.619 23.003 -0.055 26.732 hybrid contribution 2.836 0.726 0.025 2.927 sum -10.783 23.729 -0.030 26.064 Atomic orbital electron populations 1.22245 0.72734 1.05755 1.04787 1.45582 1.08175 1.03160 1.50290 1.22905 0.90734 0.93959 1.08637 1.21785 0.97716 0.92772 1.07902 1.20855 0.89782 0.92631 1.12911 1.19525 0.86605 0.81486 0.72789 1.90856 1.23391 1.78373 1.46233 1.86617 1.39155 1.16629 1.83123 1.23324 0.84880 0.89346 1.02717 1.21279 0.98470 0.89435 1.04413 1.23182 0.98842 1.00851 1.03360 1.84665 1.14488 0.93609 1.96871 1.22704 0.91550 0.93750 1.58535 0.90831 1.25023 0.97882 0.96330 0.94577 1.70022 1.27423 1.05871 1.47234 0.86146 0.82331 0.78567 0.78374 1.20255 1.20760 1.19654 1.73776 1.02875 1.13435 1.16755 0.89389 0.88408 0.88158 0.79695 0.81619 0.90973 0.90983 0.90307 0.90302 0.91696 0.91696 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.28 11.31 59.85 0.68 0.96 16 2 N -0.28 -2.37 3.70 -68.13 -0.25 -2.62 16 3 C -0.02 -0.14 11.45 -17.17 -0.20 -0.34 16 4 C -0.17 -1.75 10.81 -39.35 -0.43 -2.17 16 5 C 0.00 -0.06 7.17 -82.79 -0.59 -0.65 16 6 C 0.55 8.67 7.97 34.54 0.28 8.94 16 7 O -0.50 -8.59 16.72 -19.25 -0.32 -8.91 16 8 O -0.34 -5.53 10.23 -40.59 -0.42 -5.94 16 9 C 0.07 1.14 5.48 37.16 0.20 1.34 16 10 C -0.10 -1.70 5.60 -26.73 -0.15 -1.85 16 11 C -0.11 -2.35 5.67 37.16 0.21 -2.14 16 12 S -0.12 -3.31 21.44 -107.50 -2.30 -5.61 16 13 C -0.52 -14.99 9.50 30.94 0.29 -14.70 16 14 H 0.07 2.06 7.80 -52.49 -0.41 1.65 16 15 C 0.07 2.03 5.49 -17.43 -0.10 1.94 16 16 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 17 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 21 N -0.23 -2.91 11.99 33.41 0.40 -2.51 16 22 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 23 H 0.10 0.03 8.13 -51.93 -0.42 -0.39 16 24 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.19 0.47 8.06 -52.49 -0.42 0.04 16 26 H 0.17 1.41 8.06 -52.49 -0.42 0.98 16 27 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 28 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 30 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 31 H 0.06 1.31 8.14 -51.91 -0.42 0.89 16 32 H 0.06 1.31 8.14 -51.92 -0.42 0.89 16 33 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 314.08 15.07 4.73 4.73 Total: -1.00 -35.71 314.08 -6.44 -42.16 By element: Atomic # 1 Polarization: 0.30 SS G_CDS: -4.19 Total: -3.89 kcal Atomic # 6 Polarization: -8.85 SS G_CDS: 0.20 Total: -8.65 kcal Atomic # 7 Polarization: -31.50 SS G_CDS: 0.88 Total: -30.62 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.74 Total: -14.85 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Atomic # 16 Polarization: -3.31 SS G_CDS: -2.30 Total: -5.61 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -35.71 -6.44 -42.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805542686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.535 kcal (2) G-P(sol) polarization free energy of solvation -35.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds