Wall clock time and date at job start Mon Mar 30 2020 02:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35041 * 124.88247 * 2 1 4 4 C 1.35350 * 107.24345 * 179.70454 * 3 2 1 5 5 C 1.41547 * 105.50012 * 0.41552 * 4 3 2 6 6 C 1.47579 * 126.52355 * 179.84569 * 5 4 3 7 7 O 1.21485 * 120.00265 * 359.71042 * 6 5 4 8 8 O 1.34735 * 119.99809 * 179.71258 * 6 5 4 9 9 C 1.45196 * 116.99802 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47070 * 179.97438 * 9 8 6 11 11 C 1.53007 * 109.47067 * 180.02562 * 10 9 8 12 12 S 1.81003 * 109.46911 * 180.02562 * 11 10 9 13 13 C 1.76204 * 99.99814 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00095 * 359.97438 * 13 12 11 15 15 C 1.38801 * 119.99862 * 179.97438 * 13 12 11 16 16 N 1.31635 * 119.99988 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99900 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46875 * 90.00058 * 17 15 13 19 19 H 1.48494 * 109.47127 * 209.99911 * 17 15 13 20 20 H 1.48500 * 109.46962 * 330.00148 * 17 15 13 21 21 N 1.28467 * 124.87780 * 179.97438 * 2 1 3 22 22 H 1.09001 * 109.47440 * 270.00060 * 1 2 3 23 23 H 1.08997 * 109.46943 * 29.99601 * 1 2 3 24 24 H 1.08995 * 109.47317 * 149.99996 * 1 2 3 25 25 H 1.08002 * 126.37686 * 0.02562 * 3 2 1 26 26 H 1.07998 * 127.25062 * 180.25990 * 4 3 2 27 27 H 1.08996 * 109.47465 * 300.00044 * 9 8 6 28 28 H 1.08999 * 109.47008 * 60.00054 * 9 8 6 29 29 H 1.08998 * 109.47592 * 300.00297 * 10 9 8 30 30 H 1.09007 * 109.46935 * 60.00470 * 10 9 8 31 31 H 1.09004 * 109.47191 * 299.99781 * 11 10 9 32 32 H 1.08999 * 109.47130 * 60.00075 * 11 10 9 33 33 H 0.96994 * 119.99817 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.1078 0.0000 4 6 3.5271 0.6976 0.0067 5 6 3.4744 -0.7168 0.0007 6 6 4.6267 -1.6388 0.0013 7 8 5.7583 -1.1968 0.0020 8 8 4.4238 -2.9707 0.0010 9 6 5.6035 -3.8172 0.0010 10 6 5.1769 -5.2865 0.0012 11 6 6.4200 -6.1785 0.0019 12 16 5.9153 -7.9168 0.0014 13 6 7.4964 -8.6944 0.0015 14 1 8.3938 -8.0935 0.0014 15 6 7.5886 -10.0794 0.0018 16 7 6.4949 -10.8118 0.0015 17 14 9.2649 -10.9039 0.0026 18 1 9.7084 -11.1221 1.4029 19 1 9.1742 -12.2104 -0.6972 20 1 10.2444 -10.0344 -0.6971 21 7 2.1996 -1.0539 0.0005 22 1 -0.3634 0.0000 1.0277 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3634 -0.8899 -0.5138 25 1 1.8903 2.1305 0.0004 26 1 4.4106 1.3188 0.0125 27 1 6.1984 -3.6114 -0.8888 28 1 6.1981 -3.6118 0.8911 29 1 4.5822 -5.4921 0.8912 30 1 4.5821 -5.4923 -0.8888 31 1 7.0151 -5.9732 -0.8880 32 1 7.0145 -5.9726 0.8920 33 1 6.5593 -11.7796 0.0020 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805542686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:41 Heat of formation + Delta-G solvation = -38.745907 kcal Electronic energy + Delta-G solvation = -16991.737758 eV Core-core repulsion = 13951.703222 eV Total energy + Delta-G solvation = -3040.034536 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.68634 -41.29901 -37.85846 -34.97561 -34.59971 -34.39464 -31.83051 -29.10808 -28.00271 -27.29579 -24.59316 -22.73972 -22.49484 -21.43097 -19.58836 -18.82830 -18.34247 -17.89309 -17.20029 -17.07442 -16.90190 -16.13730 -15.92318 -15.08981 -14.81223 -14.36763 -14.20960 -14.13775 -13.80371 -13.54935 -13.35997 -13.15502 -12.94874 -12.64190 -12.42976 -12.42379 -12.03524 -11.95436 -11.55574 -11.49294 -11.15155 -10.37014 -10.35578 -10.13512 -8.69197 -8.38325 -6.15321 0.19101 1.12250 1.18560 1.34482 1.39969 1.49340 1.66022 1.93726 2.02456 2.26834 2.96135 3.23553 3.32396 3.82442 3.85031 3.95056 3.95308 4.14106 4.31350 4.40174 4.43789 4.50909 4.65209 4.67006 4.69640 4.74617 4.99071 5.05979 5.23840 5.31614 5.39701 5.84268 6.17703 6.48677 6.88222 7.03898 8.71242 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.049469 B = 0.002686 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.871361 B =10423.274445 C =10958.094174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.275 5.275 3 C 0.007 3.993 4 C -0.193 4.193 5 C -0.042 4.042 6 C 0.552 3.448 7 O -0.526 6.526 8 O -0.350 6.350 9 C 0.079 3.921 10 C -0.085 4.085 11 C -0.090 4.090 12 S -0.187 6.187 13 C -0.540 4.540 14 H 0.075 0.925 15 C 0.015 3.985 16 N -0.908 5.908 17 Si 0.996 3.004 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.263 1.263 21 N -0.267 5.267 22 H 0.103 0.897 23 H 0.137 0.863 24 H 0.095 0.905 25 H 0.239 0.761 26 H 0.174 0.826 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.409 26.593 -0.052 29.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.065 5.065 3 C -0.135 4.135 4 C -0.221 4.221 5 C -0.198 4.198 6 C 0.396 3.604 7 O -0.414 6.414 8 O -0.265 6.265 9 C 0.004 3.996 10 C -0.124 4.124 11 C -0.239 4.239 12 S 0.041 5.959 13 C -0.687 4.687 14 H 0.093 0.907 15 C -0.190 4.190 16 N -0.544 5.544 17 Si 0.818 3.182 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.187 1.187 21 N -0.106 5.106 22 H 0.122 0.878 23 H 0.155 0.845 24 H 0.114 0.886 25 H 0.255 0.745 26 H 0.192 0.808 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.011 25.094 -0.057 28.740 hybrid contribution 2.780 0.225 0.028 2.789 sum -11.231 25.319 -0.028 27.698 Atomic orbital electron populations 1.22720 0.69907 1.07544 1.06383 1.46111 1.09734 1.02682 1.47956 1.23642 0.89299 0.95487 1.05105 1.22080 0.99711 0.91346 1.08930 1.20839 0.89584 0.93562 1.15770 1.19991 0.87339 0.81155 0.71926 1.90821 1.24432 1.78491 1.47658 1.86604 1.39120 1.17415 1.83377 1.23134 0.84924 0.88204 1.03363 1.21093 0.96889 0.90078 1.04319 1.23057 1.00196 0.96784 1.03861 1.84668 1.15380 0.98737 1.97070 1.23056 0.92070 0.94613 1.58987 0.90691 1.26092 1.02314 0.96920 0.93698 1.70153 1.29969 1.06360 1.47912 0.84986 0.76893 0.77487 0.78854 1.19240 1.19860 1.18720 1.73696 1.02975 1.15678 1.18288 0.87840 0.84452 0.88641 0.74520 0.80831 0.90360 0.90370 0.90442 0.90436 0.91128 0.91102 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.26 11.31 127.77 1.44 1.70 16 2 N -0.27 -3.95 3.70 -369.46 -1.37 -5.31 16 3 C 0.01 0.07 11.45 83.53 0.96 1.03 16 4 C -0.19 -3.61 10.81 22.42 0.24 -3.37 16 5 C -0.04 -1.14 7.17 42.42 0.30 -0.83 16 6 C 0.55 17.66 7.97 70.29 0.56 18.22 16 7 O -0.53 -18.34 16.72 19.89 0.33 -18.01 16 8 O -0.35 -11.57 10.23 -56.45 -0.58 -12.15 16 9 C 0.08 2.48 5.48 71.98 0.39 2.88 16 10 C -0.09 -2.98 5.60 30.60 0.17 -2.81 16 11 C -0.09 -3.72 5.67 71.98 0.41 -3.32 16 12 S -0.19 -10.16 21.44 -56.49 -1.21 -11.37 16 13 C -0.54 -31.58 9.50 67.95 0.65 -30.94 16 14 H 0.07 4.21 7.80 -2.91 -0.02 4.19 16 15 C 0.01 0.85 5.49 84.86 0.47 1.31 16 16 N -0.91 -55.39 13.22 21.65 0.29 -55.10 16 17 Si 1.00 44.48 29.55 68.60 2.03 46.50 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 19 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 21 N -0.27 -6.59 11.99 -48.22 -0.58 -7.17 16 22 H 0.10 0.11 8.14 -2.39 -0.02 0.09 16 23 H 0.14 -0.57 8.13 -2.39 -0.02 -0.59 16 24 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.24 -0.17 8.06 -2.91 -0.02 -0.19 16 26 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 27 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 28 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 31 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.07 2.84 8.14 -2.40 -0.02 2.82 16 33 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -79.63 314.08 5.61 -74.02 By element: Atomic # 1 Polarization: 3.59 SS G_CDS: 1.11 Total: 4.70 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 5.59 Total: -16.11 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: -1.66 Total: -67.58 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -0.25 Total: -30.16 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: -10.16 SS G_CDS: -1.21 Total: -11.37 kcal Total: -79.63 5.61 -74.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805542686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.277 kcal (2) G-P(sol) polarization free energy of solvation -79.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds