Wall clock time and date at job start Mon Mar 30 2020 01:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30430 * 125.99139 * 2 1 4 4 N 1.39932 * 108.91921 * 179.97438 * 3 2 1 5 5 H 0.97001 * 125.74094 * 179.97438 * 4 3 2 6 6 C 1.34221 * 108.51118 * 0.24752 * 4 3 2 7 7 C 1.38128 * 107.40944 * 359.61229 * 6 4 3 8 8 C 1.47287 * 126.42789 * 180.11428 * 7 6 4 9 9 O 1.21520 * 120.00283 * 180.32270 * 8 7 6 10 10 O 1.34758 * 119.99840 * 0.31642 * 8 7 6 11 11 C 1.45200 * 116.99846 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47005 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47020 * 179.97438 * 12 11 10 14 14 S 1.81002 * 109.46984 * 179.97438 * 13 12 11 15 15 C 1.76202 * 99.99825 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00184 * 0.02562 * 15 14 13 17 17 C 1.38806 * 119.99889 * 180.02562 * 15 14 13 18 18 N 1.31628 * 119.99608 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99972 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46824 * 90.00084 * 19 17 15 21 21 H 1.48496 * 109.47107 * 210.00198 * 19 17 15 22 22 H 1.48505 * 109.47236 * 330.00625 * 19 17 15 23 23 H 1.08997 * 109.47164 * 90.02426 * 1 2 3 24 24 H 1.09002 * 109.46676 * 210.01960 * 1 2 3 25 25 H 1.08992 * 109.47147 * 330.02073 * 1 2 3 26 26 H 1.08003 * 126.29824 * 179.72433 * 6 4 3 27 27 H 1.08999 * 109.46764 * 300.00098 * 11 10 8 28 28 H 1.08992 * 109.47248 * 59.99986 * 11 10 8 29 29 H 1.09005 * 109.47125 * 299.99943 * 12 11 10 30 30 H 1.09000 * 109.47329 * 59.99983 * 12 11 10 31 31 H 1.09005 * 109.47165 * 299.99967 * 13 12 11 32 32 H 1.09000 * 109.47043 * 59.99858 * 13 12 11 33 33 H 0.96999 * 119.99523 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6112 0.6445 0.0006 5 1 4.3839 1.2308 0.0004 6 6 3.6449 -0.6973 -0.0045 7 6 2.3377 -1.1435 0.0005 8 6 1.8929 -2.5476 0.0000 9 8 0.7061 -2.8091 -0.0011 10 8 2.8019 -3.5424 0.0005 11 6 2.2916 -4.9017 -0.0006 12 6 3.4628 -5.8862 0.0009 13 6 2.9250 -7.3186 0.0003 14 16 4.3106 -8.4832 0.0013 15 6 3.4283 -10.0084 0.0012 16 1 2.3483 -10.0075 0.0002 17 6 4.1213 -11.2111 0.0024 18 7 3.4621 -12.3504 0.0018 19 14 5.9893 -11.2127 0.0034 20 1 6.4835 -11.2121 1.4038 21 1 6.4836 -12.4260 -0.6956 22 1 6.4857 -10.0010 -0.6971 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8901 0.5135 26 1 4.5311 -1.3146 -0.0097 27 1 1.6818 -5.0616 0.8886 28 1 1.6838 -5.0609 -0.8913 29 1 4.0729 -5.7264 -0.8882 30 1 4.0702 -5.7269 0.8918 31 1 2.3152 -7.4781 0.8896 32 1 2.3174 -7.4782 -0.8904 33 1 3.9464 -13.1909 0.0023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805542970.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:20 Heat of formation + Delta-G solvation = -33.922113 kcal Electronic energy + Delta-G solvation = -17149.635391 eV Core-core repulsion = 14109.810030 eV Total energy + Delta-G solvation = -3039.825360 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.80558 -39.95991 -36.60747 -33.61977 -33.36073 -32.46355 -30.94527 -28.37446 -26.67838 -25.62855 -23.71913 -21.54922 -21.19889 -20.05656 -18.58117 -17.57271 -17.18917 -16.62102 -16.08188 -15.42795 -15.01706 -14.71288 -14.49120 -14.34139 -13.33745 -13.20306 -13.11462 -12.84692 -12.77806 -12.45023 -12.36613 -11.53642 -11.39087 -11.20145 -11.09489 -10.97628 -10.59042 -10.32770 -10.21560 -9.94283 -9.83241 -9.28647 -9.03308 -8.62407 -6.99006 -6.30677 -4.03992 1.03154 1.69930 2.18832 2.64697 2.99096 3.04148 3.28074 3.42671 3.55867 4.10501 4.28895 4.30163 4.73106 4.77275 4.98973 5.06063 5.08528 5.09034 5.18617 5.40483 5.41180 5.50656 5.64507 5.69395 5.80019 6.03453 6.10180 6.33683 6.43469 6.58691 6.63868 7.09329 7.79717 7.93046 8.42616 9.14690 10.78792 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.048818 B = 0.002875 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.416713 B = 9736.152315 C =10278.517696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.141 3.859 3 N -0.301 5.301 4 N -0.461 5.461 5 H 0.447 0.553 6 C 0.138 3.862 7 C -0.280 4.280 8 C 0.541 3.459 9 O -0.512 6.512 10 O -0.357 6.357 11 C 0.075 3.925 12 C -0.101 4.101 13 C -0.084 4.084 14 S -0.208 6.208 15 C -0.504 4.504 16 H 0.089 0.911 17 C 0.092 3.908 18 N -0.881 5.881 19 Si 0.862 3.138 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.237 1.237 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.198 0.802 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.730 25.414 -0.089 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.027 4.027 3 N -0.124 5.124 4 N -0.165 5.165 5 H 0.292 0.708 6 C -0.016 4.016 7 C -0.293 4.293 8 C 0.386 3.614 9 O -0.401 6.401 10 O -0.274 6.274 11 C 0.000 4.000 12 C -0.139 4.139 13 C -0.233 4.233 14 S 0.020 5.980 15 C -0.652 4.652 16 H 0.107 0.893 17 C -0.117 4.117 18 N -0.517 5.517 19 Si 0.687 3.313 20 H -0.193 1.193 21 H -0.201 1.201 22 H -0.161 1.161 23 H 0.102 0.898 24 H 0.115 0.885 25 H 0.094 0.906 26 H 0.215 0.785 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.526 26.536 -0.088 26.580 hybrid contribution -0.102 -1.288 0.012 1.292 sum 1.424 25.248 -0.076 25.288 Atomic orbital electron populations 1.20414 0.85347 1.04383 1.03931 1.22538 0.97529 0.88285 0.94359 1.77214 0.86239 1.22146 1.26784 1.46152 1.07962 1.05668 1.56682 0.70828 1.23428 0.99513 0.85230 0.93420 1.19445 0.92704 0.91439 1.25695 1.19904 0.84010 0.84876 0.72630 1.90813 1.17721 1.84646 1.46939 1.86487 1.39915 1.16760 1.84212 1.23198 0.97444 0.76438 1.02902 1.21326 0.96748 0.91563 1.04278 1.22949 1.01183 0.94840 1.04286 1.84143 1.13367 1.02926 1.97562 1.22124 0.95810 0.88644 1.58587 0.89278 1.24798 0.99142 0.94404 0.93321 1.69937 1.36299 0.97384 1.48095 0.86670 0.85194 0.79749 0.79722 1.19339 1.20066 1.16148 0.89819 0.88512 0.90640 0.78535 0.90956 0.90945 0.90318 0.90332 0.90974 0.90937 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 9.92 36.01 0.36 -0.38 16 2 C 0.14 1.50 7.27 -82.01 -0.60 0.90 16 3 N -0.30 -3.02 12.63 33.90 0.43 -2.59 16 4 N -0.46 -3.08 7.28 30.86 0.22 -2.85 16 5 H 0.45 1.27 8.96 -182.72 -1.64 -0.37 16 6 C 0.14 1.00 11.86 -16.55 -0.20 0.81 16 7 C -0.28 -3.01 6.13 -105.08 -0.64 -3.66 16 8 C 0.54 7.06 7.95 34.41 0.27 7.33 16 9 O -0.51 -7.77 14.71 -19.28 -0.28 -8.06 16 10 O -0.36 -4.58 10.05 -40.65 -0.41 -4.99 16 11 C 0.08 1.01 5.48 37.16 0.20 1.22 16 12 C -0.10 -1.48 5.60 -26.73 -0.15 -1.63 16 13 C -0.08 -1.57 5.67 37.16 0.21 -1.36 16 14 S -0.21 -4.94 19.41 -107.50 -2.09 -7.03 16 15 C -0.50 -14.45 10.04 30.94 0.31 -14.14 16 16 H 0.09 2.72 8.03 -52.49 -0.42 2.30 16 17 C 0.09 2.66 5.50 -17.43 -0.10 2.56 16 18 N -0.88 -26.54 13.97 55.49 0.78 -25.77 16 19 Si 0.86 21.22 27.74 -169.99 -4.71 16.50 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.24 -5.69 6.74 56.52 0.38 -5.31 16 23 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.10 0.97 6.56 -51.93 -0.34 0.63 16 25 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.20 0.79 8.06 -52.48 -0.42 0.37 16 27 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.07 1.34 8.14 -51.91 -0.42 0.92 16 32 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 33 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 307.20 15.07 4.63 4.63 Total: -1.00 -34.08 307.20 -7.12 -41.20 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -5.36 Total: -2.69 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -0.33 Total: -8.36 kcal Atomic # 7 Polarization: -32.64 SS G_CDS: 1.43 Total: -31.21 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.69 Total: -13.04 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.50 kcal Atomic # 16 Polarization: -4.94 SS G_CDS: -2.09 Total: -7.03 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -34.08 -7.12 -41.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805542970.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.282 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds