Wall clock time and date at job start Mon Mar 30 2020 01:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30430 * 125.99139 * 2 1 4 4 N 1.39932 * 108.91921 * 179.97438 * 3 2 1 5 5 H 0.97001 * 125.74094 * 179.97438 * 4 3 2 6 6 C 1.34221 * 108.51118 * 0.24752 * 4 3 2 7 7 C 1.38128 * 107.40944 * 359.61229 * 6 4 3 8 8 C 1.47287 * 126.42789 * 180.11428 * 7 6 4 9 9 O 1.21520 * 120.00283 * 180.32270 * 8 7 6 10 10 O 1.34758 * 119.99840 * 0.31642 * 8 7 6 11 11 C 1.45200 * 116.99846 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.47005 * 180.02562 * 11 10 8 13 13 C 1.53000 * 109.47020 * 179.97438 * 12 11 10 14 14 S 1.81002 * 109.46984 * 179.97438 * 13 12 11 15 15 C 1.76202 * 99.99825 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00184 * 0.02562 * 15 14 13 17 17 C 1.38806 * 119.99889 * 180.02562 * 15 14 13 18 18 N 1.31628 * 119.99608 * 180.02562 * 17 15 14 19 19 Si 1.86799 * 119.99972 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46824 * 90.00084 * 19 17 15 21 21 H 1.48496 * 109.47107 * 210.00198 * 19 17 15 22 22 H 1.48505 * 109.47236 * 330.00625 * 19 17 15 23 23 H 1.08997 * 109.47164 * 90.02426 * 1 2 3 24 24 H 1.09002 * 109.46676 * 210.01960 * 1 2 3 25 25 H 1.08992 * 109.47147 * 330.02073 * 1 2 3 26 26 H 1.08003 * 126.29824 * 179.72433 * 6 4 3 27 27 H 1.08999 * 109.46764 * 300.00098 * 11 10 8 28 28 H 1.08992 * 109.47248 * 59.99986 * 11 10 8 29 29 H 1.09005 * 109.47125 * 299.99943 * 12 11 10 30 30 H 1.09000 * 109.47329 * 59.99983 * 12 11 10 31 31 H 1.09005 * 109.47165 * 299.99967 * 13 12 11 32 32 H 1.09000 * 109.47043 * 59.99858 * 13 12 11 33 33 H 0.96999 * 119.99523 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0553 0.0000 4 7 3.6112 0.6445 0.0006 5 1 4.3839 1.2308 0.0004 6 6 3.6449 -0.6973 -0.0045 7 6 2.3377 -1.1435 0.0005 8 6 1.8929 -2.5476 0.0000 9 8 0.7061 -2.8091 -0.0011 10 8 2.8019 -3.5424 0.0005 11 6 2.2916 -4.9017 -0.0006 12 6 3.4628 -5.8862 0.0009 13 6 2.9250 -7.3186 0.0003 14 16 4.3106 -8.4832 0.0013 15 6 3.4283 -10.0084 0.0012 16 1 2.3483 -10.0075 0.0002 17 6 4.1213 -11.2111 0.0024 18 7 3.4621 -12.3504 0.0018 19 14 5.9893 -11.2127 0.0034 20 1 6.4835 -11.2121 1.4038 21 1 6.4836 -12.4260 -0.6956 22 1 6.4857 -10.0010 -0.6971 23 1 -0.3633 -0.0004 -1.0276 24 1 -0.3633 -0.8898 0.5142 25 1 -0.3633 0.8901 0.5135 26 1 4.5311 -1.3146 -0.0097 27 1 1.6818 -5.0616 0.8886 28 1 1.6838 -5.0609 -0.8913 29 1 4.0729 -5.7264 -0.8882 30 1 4.0702 -5.7269 0.8918 31 1 2.3152 -7.4781 0.8896 32 1 2.3174 -7.4782 -0.8904 33 1 3.9464 -13.1909 0.0023 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805542970.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:19 Heat of formation + Delta-G solvation = -56.444486 kcal Electronic energy + Delta-G solvation = -17150.612034 eV Core-core repulsion = 14109.810030 eV Total energy + Delta-G solvation = -3040.802004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.50559 -40.94297 -37.66098 -34.88152 -34.66839 -34.04731 -31.70518 -29.07756 -28.16732 -27.57696 -24.60007 -22.74836 -22.05046 -20.80492 -19.65218 -19.21775 -18.28870 -17.66460 -17.10465 -17.01882 -16.27610 -15.97648 -15.60705 -15.31890 -14.93520 -14.41638 -14.10470 -14.02167 -13.84841 -13.77083 -13.34623 -13.04998 -13.02691 -12.55575 -12.33463 -12.22439 -12.14550 -11.77926 -11.44607 -11.36478 -11.15123 -10.60751 -10.58543 -10.01221 -8.98515 -8.50748 -6.22584 0.33609 0.92587 1.08267 1.34417 1.44420 1.51707 1.74705 2.01054 2.11627 2.26188 2.67898 2.87406 3.38530 3.71704 3.89375 3.98483 4.03320 4.17828 4.21814 4.34265 4.45734 4.62641 4.69774 4.73560 4.85614 4.92285 5.04553 5.14614 5.33975 5.53497 5.70746 6.11911 6.18652 6.42839 6.82406 6.92854 8.62433 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.048818 B = 0.002875 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.416713 B = 9736.152315 C =10278.517696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.129 3.871 3 N -0.322 5.322 4 N -0.444 5.444 5 H 0.464 0.536 6 C 0.167 3.833 7 C -0.316 4.316 8 C 0.541 3.459 9 O -0.543 6.543 10 O -0.351 6.351 11 C 0.081 3.919 12 C -0.086 4.086 13 C -0.075 4.075 14 S -0.205 6.205 15 C -0.526 4.526 16 H 0.050 0.950 17 C 0.036 3.964 18 N -0.924 5.924 19 Si 0.927 3.073 20 H -0.261 1.261 21 H -0.265 1.265 22 H -0.225 1.225 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.235 0.765 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.127 27.368 -0.144 27.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.039 4.039 3 N -0.145 5.145 4 N -0.149 5.149 5 H 0.314 0.686 6 C 0.012 3.988 7 C -0.329 4.329 8 C 0.388 3.612 9 O -0.434 6.434 10 O -0.267 6.267 11 C 0.006 3.994 12 C -0.124 4.124 13 C -0.224 4.224 14 S 0.023 5.977 15 C -0.673 4.673 16 H 0.068 0.932 17 C -0.169 4.169 18 N -0.562 5.562 19 Si 0.748 3.252 20 H -0.185 1.185 21 H -0.189 1.189 22 H -0.148 1.148 23 H 0.106 0.894 24 H 0.100 0.900 25 H 0.107 0.893 26 H 0.251 0.749 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.936 28.533 -0.144 28.803 hybrid contribution -0.920 -1.789 0.034 2.012 sum 3.016 26.743 -0.109 26.913 Atomic orbital electron populations 1.20399 0.85104 1.04263 1.04197 1.22747 0.98167 0.88538 0.94466 1.77165 0.87596 1.22279 1.27478 1.46200 1.07638 1.05989 1.55063 0.68644 1.23907 0.99326 0.85404 0.90185 1.19481 0.94432 0.90151 1.28868 1.20283 0.83626 0.85541 0.71743 1.90799 1.18909 1.85061 1.48644 1.86462 1.39693 1.16278 1.84297 1.22983 0.96667 0.76869 1.02929 1.21138 0.97100 0.88994 1.05194 1.22989 0.99292 0.95911 1.04186 1.83752 1.15153 1.01168 1.97587 1.22371 0.94771 0.91752 1.58424 0.93150 1.25825 1.04473 0.93895 0.92698 1.70046 1.38625 0.98310 1.49176 0.85691 0.78662 0.80569 0.80281 1.18528 1.18924 1.14804 0.89364 0.89993 0.89307 0.74858 0.91056 0.91041 0.89391 0.89392 0.91159 0.91124 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 9.92 71.24 0.71 -0.74 16 2 C 0.13 2.61 7.27 43.53 0.32 2.92 16 3 N -0.32 -5.89 12.63 -46.65 -0.59 -6.48 16 4 N -0.44 -4.61 7.28 -56.28 -0.41 -5.02 16 5 H 0.46 1.06 8.96 -213.43 -1.91 -0.85 16 6 C 0.17 1.89 11.86 84.30 1.00 2.89 16 7 C -0.32 -6.30 6.13 -20.16 -0.12 -6.42 16 8 C 0.54 13.54 7.95 70.20 0.56 14.10 16 9 O -0.54 -16.50 14.71 19.77 0.29 -16.20 16 10 O -0.35 -8.27 10.05 -56.69 -0.57 -8.84 16 11 C 0.08 2.05 5.48 71.98 0.39 2.45 16 12 C -0.09 -2.33 5.60 30.59 0.17 -2.16 16 13 C -0.08 -2.74 5.67 71.98 0.41 -2.33 16 14 S -0.20 -9.49 19.41 -56.49 -1.10 -10.59 16 15 C -0.53 -30.64 10.04 67.96 0.68 -29.95 16 16 H 0.05 3.21 8.03 -2.91 -0.02 3.19 16 17 C 0.04 2.08 5.50 84.86 0.47 2.55 16 18 N -0.92 -56.70 13.97 21.65 0.30 -56.40 16 19 Si 0.93 43.22 27.74 68.60 1.90 45.12 16 20 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 21 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.22 -9.94 6.74 99.48 0.67 -9.27 16 23 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.08 1.71 6.56 -2.39 -0.02 1.69 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.24 0.76 8.06 -2.91 -0.02 0.73 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.09 2.27 8.14 -2.38 -0.02 2.25 16 30 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.07 2.60 8.14 -2.40 -0.02 2.58 16 33 H 0.28 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -74.49 307.20 3.59 -70.90 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -0.82 Total: 4.21 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 4.58 Total: -16.70 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: -0.70 Total: -67.90 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.28 Total: -25.04 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 1.90 Total: 45.12 kcal Atomic # 16 Polarization: -9.49 SS G_CDS: -1.10 Total: -10.59 kcal Total: -74.49 3.59 -70.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805542970.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.457 kcal (2) G-P(sol) polarization free energy of solvation -74.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds