Wall clock time and date at job start Mon Mar 30 2020 01:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46973 * 2 1 4 4 N 1.29422 * 125.69421 * 90.02742 * 3 2 1 5 5 N 1.26401 * 116.47346 * 179.97438 * 4 3 2 6 6 C 1.29414 * 116.47586 * 0.02562 * 5 4 3 7 7 C 1.50701 * 125.69413 * 179.97438 * 6 5 4 8 8 O 1.45202 * 109.46859 * 90.02760 * 7 6 5 9 9 C 1.34230 * 116.99836 * 180.02562 * 8 7 6 10 10 O 1.20833 * 119.99930 * 359.97438 * 9 8 7 11 11 C 1.50697 * 120.00262 * 180.27336 * 9 8 7 12 12 C 1.52996 * 109.47491 * 179.72204 * 11 9 8 13 13 C 1.50702 * 109.47159 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99766 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99802 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99900 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99548 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47467 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46715 * 120.00321 * 17 15 13 20 20 H 1.48498 * 109.46991 * 239.99741 * 17 15 13 21 21 S 1.71221 * 108.61071 * 0.22687 * 6 5 4 22 22 H 1.08998 * 109.47544 * 59.99583 * 1 2 3 23 23 H 1.09002 * 109.46937 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47171 * 299.99433 * 1 2 3 25 25 H 1.09002 * 109.46755 * 240.00258 * 2 1 3 26 26 H 1.08991 * 109.47375 * 120.00075 * 2 1 3 27 27 H 1.08998 * 109.47259 * 330.02215 * 7 6 5 28 28 H 1.09004 * 109.46840 * 210.01995 * 7 6 5 29 29 H 1.09004 * 109.46801 * 299.72165 * 11 9 8 30 30 H 1.09000 * 109.47461 * 59.71633 * 11 9 8 31 31 H 1.09004 * 109.47066 * 299.99799 * 12 11 9 32 32 H 1.08994 * 109.47405 * 59.99969 * 12 11 9 33 33 H 0.96998 * 119.99342 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2845 2.1326 1.0511 5 7 2.7007 3.3088 0.8485 6 6 2.8281 3.6709 -0.3873 7 6 3.3043 5.0189 -0.8640 8 8 4.7479 4.9953 -1.0184 9 6 5.3344 6.1271 -1.4390 10 8 4.6636 7.1050 -1.6709 11 6 6.8286 6.1761 -1.6284 12 6 7.2355 7.5679 -2.1164 13 6 8.7297 7.6167 -2.3064 14 1 9.3292 6.7425 -2.0994 15 6 9.3314 8.7774 -2.7445 16 7 8.6012 9.8417 -2.9970 17 14 11.1836 8.8380 -2.9793 18 1 11.7703 7.5193 -2.6301 19 1 11.4926 9.1572 -4.3963 20 1 11.7601 9.8857 -2.0989 21 16 2.3583 2.3653 -1.3905 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.0293 5.7803 -0.1342 28 1 2.8402 5.2500 -1.8228 29 1 7.3222 5.9650 -0.6798 30 1 7.1260 5.4310 -2.3664 31 1 6.7419 7.7790 -3.0650 32 1 6.9382 8.3129 -1.3784 33 1 9.0246 10.6583 -3.3049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614412.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:26 Heat of formation + Delta-G solvation = -40.632261 kcal Electronic energy + Delta-G solvation = -17211.811870 eV Core-core repulsion = 14171.695536 eV Total energy + Delta-G solvation = -3040.116334 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.61366 -40.08770 -36.48089 -35.00197 -33.63512 -31.93370 -31.08673 -28.47845 -26.30107 -25.30833 -23.57843 -22.25056 -20.10008 -19.94518 -19.64536 -17.53254 -16.72388 -16.29796 -16.03070 -15.83658 -15.23996 -14.67291 -14.48368 -14.13989 -13.69397 -13.44065 -13.10557 -12.54142 -12.41956 -12.29202 -12.17159 -11.74639 -11.26127 -11.00215 -10.80592 -10.74866 -10.64755 -10.37520 -10.25706 -10.09905 -9.99809 -9.93563 -9.59452 -9.19748 -8.40764 -6.04394 -4.09306 0.00642 0.54403 1.03107 2.14458 2.68181 3.00393 3.29436 3.36962 3.40570 3.63499 4.10602 4.39085 4.42597 4.63763 4.65570 4.82580 5.07284 5.15504 5.23660 5.30383 5.31346 5.44977 5.47295 5.66188 6.05673 6.12809 6.48491 6.80101 7.62991 7.68713 7.94443 8.13585 8.24119 8.32608 8.97775 9.55034 11.06639 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.053186 B = 0.002877 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.328536 B = 9729.486769 C = 9919.186366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.044 4.044 3 C -0.017 4.017 4 N -0.259 5.259 5 N -0.236 5.236 6 C -0.021 4.021 7 C 0.145 3.855 8 O -0.360 6.360 9 C 0.461 3.539 10 O -0.500 6.500 11 C -0.101 4.101 12 C 0.032 3.968 13 C -0.528 4.528 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.889 5.889 17 Si 0.896 3.104 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.283 1.283 21 S 0.199 5.801 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.063 0.937 25 H 0.091 0.909 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.096 0.904 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.836 -19.946 2.467 25.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.085 4.085 3 C -0.295 4.295 4 N -0.098 5.098 5 N -0.076 5.076 6 C -0.299 4.299 7 C 0.067 3.933 8 O -0.278 6.278 9 C 0.304 3.696 10 O -0.386 6.386 11 C -0.139 4.139 12 C -0.005 4.005 13 C -0.567 4.567 14 H 0.078 0.922 15 C -0.144 4.144 16 N -0.527 5.527 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.209 1.209 21 S 0.443 5.557 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.110 0.890 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.031 -19.380 2.679 25.293 hybrid contribution 0.896 0.273 -0.014 0.937 sum -15.135 -19.107 2.664 24.520 Atomic orbital electron populations 1.21803 0.93020 1.03028 1.02902 1.20200 0.96990 0.86326 1.05000 1.29405 1.03720 1.04239 0.92109 1.71501 1.12877 0.98642 1.26731 1.71468 1.11883 1.07272 1.16976 1.28707 1.05622 1.02787 0.92833 1.20970 0.80514 0.89246 1.02526 1.86631 1.20956 1.40780 1.79423 1.24913 0.93097 0.79372 0.72176 1.90659 1.65680 1.35781 1.46430 1.21822 0.83321 1.04865 1.03891 1.19047 0.96178 0.87718 0.97534 1.21178 0.91907 0.97945 1.45624 0.92219 1.25025 0.98396 0.95621 0.95309 1.70000 1.35339 1.02172 1.45227 0.86478 0.85265 0.78118 0.77784 1.19641 1.20953 1.20935 1.83725 1.56218 1.04614 1.11161 0.92213 0.90888 0.91755 0.89028 0.88133 0.87744 0.88566 0.88693 0.88741 0.95489 0.95462 0.92862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 37.16 0.37 -0.36 16 2 C -0.04 -0.26 6.54 -27.88 -0.18 -0.44 16 3 C -0.02 -0.17 6.78 -13.29 -0.09 -0.26 16 4 N -0.26 -3.49 11.66 32.58 0.38 -3.11 16 5 N -0.24 -3.52 11.66 32.58 0.38 -3.14 16 6 C -0.02 -0.27 7.17 -13.30 -0.10 -0.37 16 7 C 0.15 1.98 6.06 36.01 0.22 2.20 16 8 O -0.36 -5.92 10.20 -39.26 -0.40 -6.32 16 9 C 0.46 8.83 7.96 36.00 0.29 9.12 16 10 O -0.50 -10.92 15.73 -18.76 -0.30 -11.22 16 11 C -0.10 -2.03 5.75 -27.89 -0.16 -2.19 16 12 C 0.03 0.84 4.26 -27.88 -0.12 0.72 16 13 C -0.53 -14.62 9.11 -34.44 -0.31 -14.93 16 14 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.78 13.29 55.43 0.74 -26.04 16 17 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 S 0.20 1.86 23.04 -107.50 -2.48 -0.62 16 22 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 23 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.10 1.42 8.13 -51.93 -0.42 1.00 16 28 H 0.10 1.12 8.13 -51.93 -0.42 0.70 16 29 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 30 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 31 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 310.93 15.07 4.69 4.69 Total: -1.00 -33.55 310.93 -6.38 -39.93 By element: Atomic # 1 Polarization: -1.34 SS G_CDS: -4.19 Total: -5.53 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -0.19 Total: -4.94 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 1.50 Total: -32.30 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.70 Total: -17.53 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -2.48 Total: -0.62 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.55 -6.38 -39.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614412.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.702 kcal (2) G-P(sol) polarization free energy of solvation -33.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds