Wall clock time and date at job start Mon Mar 30 2020 01:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50699 * 109.46973 * 2 1 4 4 N 1.29422 * 125.69421 * 90.02742 * 3 2 1 5 5 N 1.26401 * 116.47346 * 179.97438 * 4 3 2 6 6 C 1.29414 * 116.47586 * 0.02562 * 5 4 3 7 7 C 1.50701 * 125.69413 * 179.97438 * 6 5 4 8 8 O 1.45202 * 109.46859 * 90.02760 * 7 6 5 9 9 C 1.34230 * 116.99836 * 180.02562 * 8 7 6 10 10 O 1.20833 * 119.99930 * 359.97438 * 9 8 7 11 11 C 1.50697 * 120.00262 * 180.27336 * 9 8 7 12 12 C 1.52996 * 109.47491 * 179.72204 * 11 9 8 13 13 C 1.50702 * 109.47159 * 180.02562 * 12 11 9 14 14 H 1.08001 * 119.99766 * 359.97438 * 13 12 11 15 15 C 1.37882 * 119.99802 * 179.97438 * 13 12 11 16 16 N 1.31514 * 119.99900 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99548 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47467 * 0.02562 * 17 15 13 19 19 H 1.48502 * 109.46715 * 120.00321 * 17 15 13 20 20 H 1.48498 * 109.46991 * 239.99741 * 17 15 13 21 21 S 1.71221 * 108.61071 * 0.22687 * 6 5 4 22 22 H 1.08998 * 109.47544 * 59.99583 * 1 2 3 23 23 H 1.09002 * 109.46937 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47171 * 299.99433 * 1 2 3 25 25 H 1.09002 * 109.46755 * 240.00258 * 2 1 3 26 26 H 1.08991 * 109.47375 * 120.00075 * 2 1 3 27 27 H 1.08998 * 109.47259 * 330.02215 * 7 6 5 28 28 H 1.09004 * 109.46840 * 210.01995 * 7 6 5 29 29 H 1.09004 * 109.46801 * 299.72165 * 11 9 8 30 30 H 1.09000 * 109.47461 * 59.71633 * 11 9 8 31 31 H 1.09004 * 109.47066 * 299.99799 * 12 11 9 32 32 H 1.08994 * 109.47405 * 59.99969 * 12 11 9 33 33 H 0.96998 * 119.99342 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2845 2.1326 1.0511 5 7 2.7007 3.3088 0.8485 6 6 2.8281 3.6709 -0.3873 7 6 3.3043 5.0189 -0.8640 8 8 4.7479 4.9953 -1.0184 9 6 5.3344 6.1271 -1.4390 10 8 4.6636 7.1050 -1.6709 11 6 6.8286 6.1761 -1.6284 12 6 7.2355 7.5679 -2.1164 13 6 8.7297 7.6167 -2.3064 14 1 9.3292 6.7425 -2.0994 15 6 9.3314 8.7774 -2.7445 16 7 8.6012 9.8417 -2.9970 17 14 11.1836 8.8380 -2.9793 18 1 11.7703 7.5193 -2.6301 19 1 11.4926 9.1572 -4.3963 20 1 11.7601 9.8857 -2.0989 21 16 2.3583 2.3653 -1.3905 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 3.0293 5.7803 -0.1342 28 1 2.8402 5.2500 -1.8228 29 1 7.3222 5.9650 -0.6798 30 1 7.1260 5.4310 -2.3664 31 1 6.7419 7.7790 -3.0650 32 1 6.9382 8.3129 -1.3784 33 1 9.0246 10.6583 -3.3049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614412.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:25 Heat of formation + Delta-G solvation = -62.329820 kcal Electronic energy + Delta-G solvation = -17212.752747 eV Core-core repulsion = 14171.695536 eV Total energy + Delta-G solvation = -3041.057211 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.54288 -41.56703 -37.92347 -35.66108 -35.64962 -33.30454 -32.57892 -29.45450 -27.99185 -26.42140 -24.37593 -23.93170 -21.59434 -20.96092 -20.51321 -19.18140 -18.29545 -17.68424 -17.53662 -16.80123 -16.46175 -16.22115 -15.48904 -15.26301 -14.81402 -14.46061 -14.24142 -14.02155 -13.89611 -13.56884 -13.19000 -12.86616 -12.68419 -12.48870 -12.23547 -12.06103 -11.97886 -11.78584 -11.65825 -11.50953 -11.29247 -11.26893 -10.91945 -10.77480 -10.58405 -8.20197 -6.33467 -0.85616 -0.26704 0.18292 1.14444 1.14986 1.44095 1.44602 1.58066 1.77304 2.42977 2.74302 3.14012 3.31060 3.57554 3.82814 3.94128 4.11291 4.20806 4.23677 4.32656 4.43593 4.44051 4.72712 4.86506 4.96775 5.03642 5.20626 5.29758 5.47381 5.55374 5.80799 6.12904 6.68146 6.85067 7.34814 7.36722 8.92569 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.053186 B = 0.002877 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.328536 B = 9729.486769 C = 9919.186366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C -0.011 4.011 4 N -0.296 5.296 5 N -0.270 5.270 6 C -0.052 4.052 7 C 0.143 3.857 8 O -0.354 6.354 9 C 0.472 3.528 10 O -0.534 6.534 11 C -0.093 4.093 12 C 0.037 3.963 13 C -0.543 4.543 14 H 0.077 0.923 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.973 3.027 18 H -0.254 1.254 19 H -0.279 1.279 20 H -0.282 1.282 21 S 0.271 5.729 22 H 0.063 0.937 23 H 0.095 0.905 24 H 0.047 0.953 25 H 0.120 0.880 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.114 0.886 30 H 0.121 0.879 31 H -0.005 1.005 32 H -0.009 1.009 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.394 -22.701 1.776 27.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 C -0.289 4.289 4 N -0.135 5.135 5 N -0.110 5.110 6 C -0.330 4.330 7 C 0.065 3.935 8 O -0.271 6.271 9 C 0.317 3.683 10 O -0.423 6.423 11 C -0.131 4.131 12 C 0.000 4.000 13 C -0.580 4.580 14 H 0.095 0.905 15 C -0.202 4.202 16 N -0.575 5.575 17 Si 0.797 3.203 18 H -0.178 1.178 19 H -0.205 1.205 20 H -0.207 1.207 21 S 0.516 5.484 22 H 0.082 0.918 23 H 0.114 0.886 24 H 0.066 0.934 25 H 0.138 0.862 26 H 0.123 0.877 27 H 0.116 0.884 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.139 0.861 31 H 0.013 0.987 32 H 0.009 0.991 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.597 -22.177 1.994 27.186 hybrid contribution 0.623 1.002 0.188 1.195 sum -14.974 -21.176 2.182 26.027 Atomic orbital electron populations 1.21814 0.92065 1.04362 1.02302 1.20508 0.97641 0.84017 1.06636 1.30131 1.01429 1.05456 0.91870 1.71479 1.14886 0.98734 1.28376 1.71432 1.12762 1.08382 1.18458 1.28579 1.07098 1.03698 0.93670 1.21161 0.78580 0.90176 1.03534 1.86562 1.23001 1.38944 1.78587 1.24540 0.92757 0.79448 0.71547 1.90653 1.66383 1.37137 1.48095 1.21559 0.84417 1.01728 1.05349 1.18822 0.95657 0.90427 0.95077 1.21662 0.92860 0.98551 1.44965 0.90509 1.26080 1.03960 0.95216 0.94932 1.70157 1.37810 1.03019 1.46488 0.85279 0.78552 0.78779 0.77682 1.17779 1.20525 1.20747 1.83408 1.54266 1.01791 1.08937 0.91795 0.88615 0.93400 0.86179 0.87677 0.88423 0.86574 0.86826 0.86138 0.98655 0.99095 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 71.98 0.71 -0.35 16 2 C -0.05 -0.42 6.54 29.85 0.20 -0.23 16 3 C -0.01 -0.20 6.78 88.46 0.60 0.40 16 4 N -0.30 -7.82 11.66 -50.84 -0.59 -8.41 16 5 N -0.27 -8.04 11.66 -50.85 -0.59 -8.63 16 6 C -0.05 -1.31 7.17 88.47 0.63 -0.67 16 7 C 0.14 3.84 6.06 71.24 0.43 4.27 16 8 O -0.35 -11.36 10.20 -51.41 -0.52 -11.88 16 9 C 0.47 18.06 7.96 71.23 0.57 18.62 16 10 O -0.53 -23.91 15.73 21.94 0.35 -23.57 16 11 C -0.09 -3.67 5.75 29.85 0.17 -3.50 16 12 C 0.04 1.99 4.26 29.85 0.13 2.12 16 13 C -0.54 -29.97 9.11 25.60 0.23 -29.74 16 14 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 15 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 16 N -0.93 -57.64 13.29 21.45 0.28 -57.36 16 17 Si 0.97 43.49 29.54 68.60 2.03 45.51 16 18 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 S 0.27 4.44 23.04 -56.49 -1.30 3.14 16 22 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 23 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 24 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 25 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.10 2.73 8.13 -2.39 -0.02 2.71 16 28 H 0.12 2.61 8.13 -2.38 -0.02 2.59 16 29 H 0.11 4.07 8.14 -2.38 -0.02 4.05 16 30 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 31 H 0.00 -0.29 8.10 -2.38 -0.02 -0.31 16 32 H -0.01 -0.56 8.10 -2.39 -0.02 -0.58 16 33 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -74.64 310.93 4.89 -69.75 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: 1.11 Total: 0.29 kcal Atomic # 6 Polarization: -12.98 SS G_CDS: 4.13 Total: -8.85 kcal Atomic # 7 Polarization: -73.50 SS G_CDS: -0.90 Total: -74.40 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -0.18 Total: -35.45 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: 4.44 SS G_CDS: -1.30 Total: 3.14 kcal Total: -74.64 4.89 -69.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614412.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.418 kcal (2) G-P(sol) polarization free energy of solvation -74.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds