Wall clock time and date at job start Mon Mar 30 2020 01:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29411 * 125.69931 * 2 1 4 4 N 1.26394 * 116.47978 * 179.68179 * 3 2 1 5 5 C 1.29424 * 116.46994 * 0.52259 * 4 3 2 6 6 C 1.50698 * 125.69142 * 179.77333 * 5 4 3 7 7 H 1.09001 * 109.47122 * 194.69812 * 6 5 4 8 8 C 1.53006 * 109.47184 * 74.69926 * 6 5 4 9 9 O 1.45202 * 109.47680 * 314.69398 * 6 5 4 10 10 C 1.34218 * 117.00377 * 209.99909 * 9 6 5 11 11 O 1.20826 * 119.99938 * 0.02562 * 10 9 6 12 12 C 1.50699 * 120.00192 * 179.97438 * 10 9 6 13 13 C 1.53001 * 109.47626 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47627 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99640 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00429 * 180.02562 * 14 13 12 17 17 N 1.31504 * 120.00224 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99738 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46723 * 90.00113 * 18 16 14 20 20 H 1.48494 * 109.47272 * 210.00279 * 18 16 14 21 21 H 1.48498 * 109.47175 * 330.00595 * 18 16 14 22 22 S 1.71206 * 108.60743 * 359.51280 * 5 4 3 23 23 H 1.08996 * 109.47398 * 270.04905 * 1 2 3 24 24 H 1.09002 * 109.47010 * 30.04663 * 1 2 3 25 25 H 1.09002 * 109.46989 * 150.04800 * 1 2 3 26 26 H 1.09001 * 109.47002 * 299.99404 * 8 6 5 27 27 H 1.08993 * 109.46955 * 59.99842 * 8 6 5 28 28 H 1.09000 * 109.47050 * 179.97438 * 8 6 5 29 29 H 1.09000 * 109.47472 * 300.00315 * 12 10 9 30 30 H 1.09005 * 109.47098 * 60.00468 * 12 10 9 31 31 H 1.09000 * 109.46556 * 300.00390 * 13 12 10 32 32 H 1.08998 * 109.46959 * 59.99444 * 13 12 10 33 33 H 0.97004 * 119.99928 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0509 0.0000 4 7 3.5097 0.8484 0.0063 5 6 3.8936 -0.3876 0.0015 6 6 5.3232 -0.8642 0.0024 7 1 5.3541 -1.9209 -0.2631 8 6 5.9244 -0.6708 1.3960 9 8 6.0892 -0.0995 -0.9656 10 6 7.1260 -0.7202 -1.5496 11 8 7.3848 -1.8649 -1.2620 12 6 7.9667 0.0101 -2.5650 13 6 9.0730 -0.9168 -3.0728 14 6 9.9140 -0.1863 -4.0877 15 1 9.6823 0.8367 -4.3451 16 6 10.9785 -0.8242 -4.6884 17 7 11.7121 -0.1869 -5.5744 18 14 11.3788 -2.5938 -4.2436 19 1 10.6395 -3.5108 -5.1481 20 1 12.8384 -2.8234 -4.3912 21 1 10.9763 -2.8542 -2.8381 22 16 2.5061 -1.3905 0.0012 23 1 -0.3634 0.0009 1.0276 24 1 -0.3633 0.8896 -0.5146 25 1 -0.3633 -0.8904 -0.5131 26 1 5.8937 0.3859 1.6615 27 1 5.3495 -1.2449 2.1226 28 1 6.9583 -1.0160 1.3968 29 1 7.3396 0.3189 -3.4013 30 1 8.4135 0.8897 -2.1016 31 1 9.7001 -1.2260 -2.2366 32 1 8.6259 -1.7963 -3.5362 33 1 12.4613 -0.6356 -5.9967 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812617707.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:21 Heat of formation + Delta-G solvation = -34.206772 kcal Electronic energy + Delta-G solvation = -17721.906566 eV Core-core repulsion = 14682.068862 eV Total energy + Delta-G solvation = -3039.837704 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.63370 -40.28626 -36.78293 -33.99159 -33.64202 -32.14683 -31.32090 -28.72085 -26.63741 -25.86202 -23.68566 -21.98313 -20.17575 -19.80187 -19.35245 -17.59981 -16.93369 -16.35114 -16.29685 -15.83230 -14.86247 -14.39989 -14.06540 -13.96993 -13.62615 -13.50220 -13.21190 -13.06772 -12.66367 -12.56236 -12.29329 -11.69511 -11.45488 -11.05837 -10.94813 -10.69851 -10.49318 -10.35938 -10.18654 -10.07446 -10.00928 -9.90240 -9.72755 -9.27649 -8.57241 -6.08290 -4.08438 0.02884 0.46747 0.96721 2.22307 2.56220 2.92793 3.32702 3.39823 3.48124 3.56652 4.09600 4.44588 4.46009 4.64072 4.70374 4.91356 5.00700 5.08411 5.15380 5.26187 5.40313 5.51028 5.55550 5.89473 5.96765 5.99620 6.40528 6.67400 7.20249 7.27971 7.68507 8.07419 8.26697 8.45482 8.94262 9.53080 11.04323 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.039107 B = 0.003526 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.816253 B = 7939.443090 C = 8095.890946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.018 4.018 3 N -0.261 5.261 4 N -0.227 5.227 5 C -0.021 4.021 6 C 0.168 3.832 7 H 0.107 0.893 8 C -0.162 4.162 9 O -0.341 6.341 10 C 0.460 3.540 11 O -0.509 6.509 12 C -0.095 4.095 13 C -0.001 4.001 14 C -0.528 4.528 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.900 5.900 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.261 1.261 22 S 0.183 5.817 23 H 0.092 0.908 24 H 0.096 0.904 25 H 0.086 0.914 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.026 0.974 32 H 0.021 0.979 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.261 -3.612 14.269 26.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.297 4.297 3 N -0.100 5.100 4 N -0.064 5.064 5 C -0.301 4.301 6 C 0.109 3.891 7 H 0.125 0.875 8 C -0.220 4.220 9 O -0.258 6.258 10 C 0.304 3.696 11 O -0.396 6.396 12 C -0.132 4.132 13 C -0.039 4.039 14 C -0.566 4.566 15 H 0.094 0.906 16 C -0.131 4.131 17 N -0.538 5.538 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.186 1.186 22 S 0.427 5.573 23 H 0.110 0.890 24 H 0.114 0.886 25 H 0.104 0.896 26 H 0.096 0.904 27 H 0.093 0.907 28 H 0.099 0.901 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -22.003 -3.628 14.253 26.466 hybrid contribution 0.293 -0.900 0.128 0.955 sum -21.709 -4.527 14.381 26.431 Atomic orbital electron populations 1.20408 0.83688 1.04925 1.04435 1.29364 1.04455 0.91821 1.04012 1.71528 0.96927 1.26703 1.14820 1.71455 1.06022 1.16696 1.12271 1.28911 1.02021 0.93092 1.06034 1.20741 0.81819 0.96132 0.90444 0.87519 1.22186 1.02373 1.04210 0.93260 1.86773 1.41473 1.45193 1.52403 1.24927 0.78238 0.86351 0.80130 1.90613 1.68417 1.18924 1.61620 1.21589 0.96424 1.00565 0.94638 1.19490 0.92628 0.94776 0.96980 1.21024 1.12423 1.00942 1.22167 0.90605 1.24954 0.95673 0.98052 0.94414 1.69901 1.18902 1.37390 1.27617 0.86802 0.77411 0.85328 0.80044 1.20174 1.21299 1.18581 1.83690 0.97034 1.11366 1.65195 0.88980 0.88564 0.89571 0.90429 0.90671 0.90063 0.88191 0.87978 0.95518 0.96048 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.48 36.01 0.38 0.00 16 2 C -0.02 -0.18 7.53 -13.30 -0.10 -0.28 16 3 N -0.26 -3.53 11.66 32.58 0.38 -3.15 16 4 N -0.23 -3.40 11.66 32.58 0.38 -3.02 16 5 C -0.02 -0.27 6.43 -13.29 -0.09 -0.36 16 6 C 0.17 2.26 3.09 -27.88 -0.09 2.17 16 7 H 0.11 1.36 7.16 -51.93 -0.37 0.99 16 8 C -0.16 -1.83 9.53 37.16 0.35 -1.47 16 9 O -0.34 -5.64 9.86 -39.23 -0.39 -6.02 16 10 C 0.46 8.46 7.93 36.00 0.29 8.75 16 11 O -0.51 -10.29 15.20 -18.75 -0.29 -10.58 16 12 C -0.09 -1.85 5.75 -27.88 -0.16 -2.01 16 13 C 0.00 -0.03 3.33 -27.88 -0.09 -0.12 16 14 C -0.53 -14.87 9.66 -34.44 -0.33 -15.20 16 15 H 0.08 2.24 7.99 -52.48 -0.42 1.83 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.59 13.96 55.43 0.77 -26.82 16 18 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 22 S 0.18 1.64 23.04 -107.50 -2.48 -0.84 16 23 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 30 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 31 H 0.03 0.66 7.16 -51.93 -0.37 0.29 16 32 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 306.08 15.07 4.61 4.61 Total: -1.00 -34.08 306.08 -5.71 -39.80 By element: Atomic # 1 Polarization: -0.64 SS G_CDS: -4.10 Total: -4.75 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 0.06 Total: -6.55 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 1.53 Total: -32.99 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.67 Total: -16.60 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Atomic # 16 Polarization: 1.64 SS G_CDS: -2.48 Total: -0.84 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -34.08 -5.71 -39.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617707.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.589 kcal (2) G-P(sol) polarization free energy of solvation -34.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds