Wall clock time and date at job start Mon Mar 30 2020 01:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29411 * 125.69931 * 2 1 4 4 N 1.26394 * 116.47978 * 179.68179 * 3 2 1 5 5 C 1.29424 * 116.46994 * 0.52259 * 4 3 2 6 6 C 1.50698 * 125.69142 * 179.77333 * 5 4 3 7 7 H 1.09001 * 109.47122 * 194.69812 * 6 5 4 8 8 C 1.53006 * 109.47184 * 74.69926 * 6 5 4 9 9 O 1.45202 * 109.47680 * 314.69398 * 6 5 4 10 10 C 1.34218 * 117.00377 * 209.99909 * 9 6 5 11 11 O 1.20826 * 119.99938 * 0.02562 * 10 9 6 12 12 C 1.50699 * 120.00192 * 179.97438 * 10 9 6 13 13 C 1.53001 * 109.47626 * 180.02562 * 12 10 9 14 14 C 1.50695 * 109.47627 * 180.02562 * 13 12 10 15 15 H 1.08003 * 119.99640 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00429 * 180.02562 * 14 13 12 17 17 N 1.31504 * 120.00224 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99738 * 359.97438 * 16 14 13 19 19 H 1.48502 * 109.46723 * 90.00113 * 18 16 14 20 20 H 1.48494 * 109.47272 * 210.00279 * 18 16 14 21 21 H 1.48498 * 109.47175 * 330.00595 * 18 16 14 22 22 S 1.71206 * 108.60743 * 359.51280 * 5 4 3 23 23 H 1.08996 * 109.47398 * 270.04905 * 1 2 3 24 24 H 1.09002 * 109.47010 * 30.04663 * 1 2 3 25 25 H 1.09002 * 109.46989 * 150.04800 * 1 2 3 26 26 H 1.09001 * 109.47002 * 299.99404 * 8 6 5 27 27 H 1.08993 * 109.46955 * 59.99842 * 8 6 5 28 28 H 1.09000 * 109.47050 * 179.97438 * 8 6 5 29 29 H 1.09000 * 109.47472 * 300.00315 * 12 10 9 30 30 H 1.09005 * 109.47098 * 60.00468 * 12 10 9 31 31 H 1.09000 * 109.46556 * 300.00390 * 13 12 10 32 32 H 1.08998 * 109.46959 * 59.99444 * 13 12 10 33 33 H 0.97004 * 119.99928 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2622 1.0509 0.0000 4 7 3.5097 0.8484 0.0063 5 6 3.8936 -0.3876 0.0015 6 6 5.3232 -0.8642 0.0024 7 1 5.3541 -1.9209 -0.2631 8 6 5.9244 -0.6708 1.3960 9 8 6.0892 -0.0995 -0.9656 10 6 7.1260 -0.7202 -1.5496 11 8 7.3848 -1.8649 -1.2620 12 6 7.9667 0.0101 -2.5650 13 6 9.0730 -0.9168 -3.0728 14 6 9.9140 -0.1863 -4.0877 15 1 9.6823 0.8367 -4.3451 16 6 10.9785 -0.8242 -4.6884 17 7 11.7121 -0.1869 -5.5744 18 14 11.3788 -2.5938 -4.2436 19 1 10.6395 -3.5108 -5.1481 20 1 12.8384 -2.8234 -4.3912 21 1 10.9763 -2.8542 -2.8381 22 16 2.5061 -1.3905 0.0012 23 1 -0.3634 0.0009 1.0276 24 1 -0.3633 0.8896 -0.5146 25 1 -0.3633 -0.8904 -0.5131 26 1 5.8937 0.3859 1.6615 27 1 5.3495 -1.2449 2.1226 28 1 6.9583 -1.0160 1.3968 29 1 7.3396 0.3189 -3.4013 30 1 8.4135 0.8897 -2.1016 31 1 9.7001 -1.2260 -2.2366 32 1 8.6259 -1.7963 -3.5362 33 1 12.4613 -0.6356 -5.9967 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812617707.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:21 Heat of formation + Delta-G solvation = -56.877112 kcal Electronic energy + Delta-G solvation = -17722.889626 eV Core-core repulsion = 14682.068862 eV Total energy + Delta-G solvation = -3040.820764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.53775 -41.64896 -38.12053 -35.65204 -34.89536 -33.49896 -32.78277 -29.50434 -28.49343 -26.67410 -24.86173 -23.49820 -21.69851 -20.72937 -20.39346 -19.34606 -18.35257 -17.74729 -17.50279 -16.89116 -16.32032 -15.93968 -15.34946 -15.09434 -14.84378 -14.51805 -14.30009 -14.16949 -13.79881 -13.53949 -13.43723 -13.22343 -12.94369 -12.59693 -12.27569 -12.11489 -12.02564 -11.80449 -11.66099 -11.47900 -11.42671 -11.23854 -10.85762 -10.79074 -10.71384 -8.31753 -6.36784 -0.77581 -0.30354 0.16778 1.10781 1.30159 1.35666 1.37602 1.51226 1.71193 2.35034 2.69661 3.03594 3.39632 3.54687 3.67381 3.81894 4.01082 4.18309 4.26852 4.35099 4.55746 4.59948 4.61357 4.69947 4.82409 4.99460 5.06295 5.20380 5.29629 5.35169 5.57502 6.20761 6.63636 6.73304 7.28374 7.41339 8.84031 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.039107 B = 0.003526 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.816253 B = 7939.443090 C = 8095.890946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.014 4.014 3 N -0.303 5.303 4 N -0.264 5.264 5 C -0.053 4.053 6 C 0.162 3.838 7 H 0.114 0.886 8 C -0.158 4.158 9 O -0.346 6.346 10 C 0.473 3.527 11 O -0.528 6.528 12 C -0.093 4.093 13 C 0.004 3.996 14 C -0.534 4.534 15 H 0.047 0.953 16 C 0.013 3.987 17 N -0.944 5.944 18 Si 0.942 3.058 19 H -0.266 1.266 20 H -0.280 1.280 21 H -0.254 1.254 22 S 0.258 5.742 23 H 0.114 0.886 24 H 0.098 0.902 25 H 0.112 0.888 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.022 0.978 32 H 0.019 0.981 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.355 -5.547 15.574 29.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.291 4.291 3 N -0.142 5.142 4 N -0.102 5.102 5 C -0.332 4.332 6 C 0.103 3.897 7 H 0.132 0.868 8 C -0.216 4.216 9 O -0.263 6.263 10 C 0.317 3.683 11 O -0.417 6.417 12 C -0.130 4.130 13 C -0.033 4.033 14 C -0.572 4.572 15 H 0.066 0.934 16 C -0.185 4.185 17 N -0.584 5.584 18 Si 0.766 3.234 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.178 1.178 22 S 0.502 5.498 23 H 0.132 0.868 24 H 0.116 0.884 25 H 0.131 0.869 26 H 0.088 0.912 27 H 0.122 0.878 28 H 0.093 0.907 29 H 0.127 0.873 30 H 0.130 0.870 31 H 0.040 0.960 32 H 0.038 0.962 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.123 -5.554 15.571 29.244 hybrid contribution 0.767 -0.257 -0.256 0.848 sum -23.356 -5.812 15.315 28.528 Atomic orbital electron populations 1.20715 0.80543 1.06315 1.06192 1.30136 1.06315 0.91598 1.01090 1.71499 0.96845 1.28514 1.17369 1.71416 1.07239 1.18292 1.13271 1.28854 1.02898 0.93962 1.07507 1.21061 0.82168 0.96004 0.90437 0.86806 1.22184 1.02349 1.04229 0.92844 1.86716 1.40968 1.45634 1.53012 1.24346 0.78481 0.85664 0.79780 1.90599 1.69162 1.19590 1.62375 1.21364 0.95883 1.00009 0.95754 1.19318 0.93324 0.95038 0.95645 1.21339 1.12946 1.00132 1.22804 0.93442 1.25851 0.95681 1.02609 0.94370 1.70029 1.19818 1.39458 1.29115 0.85769 0.77547 0.79921 0.80156 1.19155 1.20543 1.17757 1.83367 0.93916 1.09009 1.63462 0.86816 0.88373 0.86930 0.91187 0.87771 0.90728 0.87254 0.86964 0.95978 0.96214 0.92271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.48 71.24 0.75 0.21 16 2 C -0.01 -0.23 7.53 88.46 0.67 0.43 16 3 N -0.30 -7.97 11.66 -50.85 -0.59 -8.56 16 4 N -0.26 -7.82 11.66 -50.85 -0.59 -8.41 16 5 C -0.05 -1.30 6.43 88.46 0.57 -0.73 16 6 C 0.16 4.16 3.09 29.85 0.09 4.25 16 7 H 0.11 2.73 7.16 -2.39 -0.02 2.71 16 8 C -0.16 -3.37 9.53 71.98 0.69 -2.68 16 9 O -0.35 -11.25 9.86 -51.30 -0.51 -11.76 16 10 C 0.47 17.03 7.93 71.24 0.56 17.60 16 11 O -0.53 -20.77 15.20 21.96 0.33 -20.43 16 12 C -0.09 -3.60 5.75 29.85 0.17 -3.42 16 13 C 0.00 0.21 3.33 29.85 0.10 0.31 16 14 C -0.53 -30.51 9.66 25.60 0.25 -30.26 16 15 H 0.05 2.90 7.99 -2.91 -0.02 2.87 16 16 C 0.01 0.74 5.47 84.66 0.46 1.21 16 17 N -0.94 -58.83 13.96 21.45 0.30 -58.53 16 18 Si 0.94 45.13 27.47 68.60 1.88 47.02 16 19 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.25 -11.75 6.54 99.48 0.65 -11.10 16 22 S 0.26 3.93 23.04 -56.49 -1.30 2.63 16 23 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 24 H 0.10 0.71 8.14 -2.39 -0.02 0.70 16 25 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 30 H 0.11 4.10 8.14 -2.38 -0.02 4.08 16 31 H 0.02 1.07 7.16 -2.39 -0.02 1.05 16 32 H 0.02 0.94 7.53 -2.39 -0.02 0.93 16 33 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 Total: -1.00 -74.48 306.08 4.89 -69.58 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: 1.06 Total: 1.54 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 4.31 Total: -13.09 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -0.89 Total: -75.50 kcal Atomic # 8 Polarization: -32.02 SS G_CDS: -0.17 Total: -32.19 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.02 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -1.30 Total: 2.63 kcal Total: -74.48 4.89 -69.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812617707.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.706 kcal (2) G-P(sol) polarization free energy of solvation -74.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds