Wall clock time and date at job start Mon Mar 30 2020 00:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99700 * 2 1 4 4 H 1.48504 * 109.47102 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47057 * 299.99657 * 3 2 1 6 6 H 1.48500 * 109.47389 * 60.00047 * 3 2 1 7 7 C 1.37878 * 120.00437 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00352 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99810 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46860 * 180.02562 * 9 7 2 11 11 C 1.34775 * 119.99583 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00300 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99773 * 179.97438 * 11 10 9 14 14 O 1.45206 * 109.47147 * 179.97438 * 13 11 10 15 15 C 1.34895 * 117.00197 * 179.97438 * 14 13 11 16 16 O 1.21631 * 119.99676 * 0.02562 * 15 14 13 17 17 C 1.46465 * 120.00324 * 179.97438 * 15 14 13 18 18 C 1.38030 * 126.22931 * 179.68647 * 17 15 14 19 19 C 1.39867 * 107.10153 * 179.90580 * 18 17 15 20 20 F 1.35102 * 126.07345 * 180.17093 * 19 18 17 21 21 C 1.35617 * 107.86078 * 0.36841 * 19 18 17 22 22 N 1.35703 * 108.84814 * 359.77138 * 21 19 18 23 23 H 0.97000 * 125.68152 * 180.02562 * 22 21 19 24 24 H 0.96999 * 120.00397 * 0.02562 * 1 2 3 25 25 H 1.08988 * 109.47018 * 59.99714 * 9 7 2 26 26 H 1.09001 * 109.46547 * 300.00073 * 9 7 2 27 27 H 0.96998 * 120.00251 * 359.97438 * 10 9 7 28 28 H 1.09001 * 109.46980 * 59.99839 * 13 11 10 29 29 H 1.09004 * 109.47113 * 299.99819 * 13 11 10 30 30 H 1.08001 * 126.45020 * 0.02562 * 18 17 15 31 31 H 1.07992 * 125.57257 * 179.79249 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 1.7540 -4.8833 -0.0011 12 8 0.5617 -5.1050 -0.0011 13 6 2.7334 -6.0287 -0.0016 14 8 2.0075 -7.2863 -0.0015 15 6 2.7422 -8.4176 -0.0025 16 8 3.9568 -8.3538 -0.0030 17 6 2.0773 -9.7226 -0.0019 18 6 2.6991 -10.9549 -0.0089 19 6 1.6910 -11.9244 -0.0031 20 9 1.8744 -13.2629 -0.0038 21 6 0.4964 -11.2822 -0.0012 22 7 0.7184 -9.9435 -0.0005 23 1 0.0336 -9.2564 0.0012 24 1 -0.4851 0.8400 -0.0004 25 1 0.6242 -2.5567 -0.8902 26 1 0.6249 -2.5571 0.8897 27 1 3.1569 -3.4353 -0.0009 28 1 3.3601 -5.9713 0.8883 29 1 3.3600 -5.9706 -0.8917 30 1 3.7638 -11.1364 -0.0154 31 1 -0.4728 -11.7584 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815390877.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:56 Heat of formation + Delta-G solvation = -147.436066 kcal Electronic energy + Delta-G solvation = -19107.253051 eV Core-core repulsion = 15496.292181 eV Total energy + Delta-G solvation = -3610.960871 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.57202 -42.48195 -41.28732 -40.25579 -37.61009 -36.19512 -34.42725 -32.00873 -31.40416 -30.26194 -28.44425 -25.15255 -24.26686 -22.10734 -21.66735 -21.51574 -20.29895 -19.15239 -18.32416 -17.93097 -17.64514 -17.01802 -16.82849 -16.73778 -16.37983 -16.17226 -15.98140 -15.48954 -14.86796 -14.73939 -14.58665 -14.28756 -14.12400 -13.84256 -13.65255 -12.92250 -12.80048 -12.76582 -12.23237 -12.07727 -11.99365 -11.47542 -10.94391 -10.83798 -10.13023 -9.94206 -9.47379 -8.30700 -6.46797 -0.06692 1.06322 1.28069 1.44528 1.44724 1.53008 1.58313 1.81905 1.90282 2.32422 2.53349 3.05030 3.36712 3.63720 3.76553 3.95717 4.02845 4.04341 4.14982 4.42388 4.79439 4.99855 5.09523 5.21435 5.30543 5.40882 5.61779 5.64029 5.81556 6.20205 6.43523 6.62523 6.76047 7.19451 7.34036 8.81547 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.063906 B = 0.002771 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.035298 B =10103.566945 C =10521.154367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.983 3.017 4 H -0.253 1.253 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.555 4.555 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.698 5.698 11 C 0.501 3.499 12 O -0.583 6.583 13 C 0.063 3.937 14 O -0.346 6.346 15 C 0.541 3.459 16 O -0.515 6.515 17 C -0.039 4.039 18 C -0.119 4.119 19 C -0.027 4.027 20 F -0.130 7.130 21 C 0.050 3.950 22 N -0.505 5.505 23 H 0.445 0.555 24 H 0.269 0.731 25 H -0.006 1.006 26 H -0.007 1.007 27 H 0.413 0.587 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.166 0.834 31 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.785 -20.487 -0.007 21.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.593 4.593 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.349 5.349 11 C 0.287 3.713 12 O -0.464 6.464 13 C -0.014 4.014 14 O -0.262 6.262 15 C 0.387 3.613 16 O -0.404 6.404 17 C -0.151 4.151 18 C -0.146 4.146 19 C -0.051 4.051 20 F -0.109 7.109 21 C -0.090 4.090 22 N -0.102 5.102 23 H 0.288 0.712 24 H 0.078 0.922 25 H 0.012 0.988 26 H 0.011 0.989 27 H 0.249 0.751 28 H 0.145 0.855 29 H 0.145 0.855 30 H 0.184 0.816 31 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 4.069 -20.313 -0.007 20.717 hybrid contribution 0.246 1.144 -0.001 1.170 sum 4.315 -19.169 -0.008 19.649 Atomic orbital electron populations 1.70127 1.08201 1.28557 1.49979 1.26028 0.95763 1.03819 0.93895 0.85126 0.79130 0.77444 0.77619 1.17652 1.20561 1.20551 1.21643 0.94439 0.90410 1.52825 0.89606 1.18636 0.88557 0.83747 0.94674 1.46038 1.11789 1.04717 1.72390 1.20628 0.89256 0.84656 0.76803 1.90673 1.18795 1.85297 1.51591 1.22802 0.92587 0.78431 1.07565 1.86576 1.40818 1.14483 1.84275 1.19882 0.85223 0.83374 0.72783 1.90911 1.14486 1.87471 1.47552 1.18856 0.84094 0.90712 1.21465 1.21466 1.00873 0.88787 1.03456 1.16525 0.93959 0.77952 1.16688 1.91454 1.95804 1.28187 1.95482 1.22576 1.00695 0.81930 1.03779 1.41951 1.06497 1.08288 1.53444 0.71247 0.92211 0.98847 0.98858 0.75061 0.85471 0.85461 0.81627 0.75455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.59 13.29 21.45 0.28 -54.31 16 2 C 0.00 0.25 5.46 84.65 0.46 0.72 16 3 Si 0.98 41.19 29.54 68.60 2.03 43.22 16 4 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 5 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 7 C -0.56 -29.02 9.28 25.60 0.24 -28.78 16 8 H 0.09 4.03 7.60 -2.91 -0.02 4.01 16 9 C 0.27 13.93 5.43 85.63 0.46 14.39 16 10 N -0.70 -27.47 5.55 -466.79 -2.59 -30.06 16 11 C 0.50 18.84 7.91 87.66 0.69 19.54 16 12 O -0.58 -27.48 16.50 15.77 0.26 -27.22 16 13 C 0.06 1.66 5.96 71.24 0.42 2.09 16 14 O -0.35 -9.65 9.77 -51.69 -0.50 -10.15 16 15 C 0.54 13.80 7.93 69.96 0.55 14.35 16 16 O -0.52 -14.71 16.68 19.41 0.32 -14.38 16 17 C -0.04 -0.83 7.09 40.32 0.29 -0.54 16 18 C -0.12 -2.34 10.66 22.61 0.24 -2.10 16 19 C -0.03 -0.46 7.98 22.06 0.18 -0.28 16 20 F -0.13 -2.47 17.32 44.97 0.78 -1.69 16 21 C 0.05 0.60 11.90 83.49 0.99 1.59 16 22 N -0.51 -7.69 6.11 -183.44 -1.12 -8.81 16 23 H 0.45 5.65 8.96 -92.71 -0.83 4.82 16 24 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 25 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 26 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 27 H 0.41 13.00 8.32 -92.71 -0.77 12.23 16 28 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 29 H 0.13 2.76 8.14 -2.38 -0.02 2.74 16 30 H 0.17 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.23 0.71 8.06 -2.91 -0.02 0.68 16 Total: -1.00 -73.45 297.53 3.59 -69.86 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -0.40 Total: 12.57 kcal Atomic # 6 Polarization: 16.45 SS G_CDS: 4.53 Total: 20.98 kcal Atomic # 7 Polarization: -89.75 SS G_CDS: -3.43 Total: -93.18 kcal Atomic # 8 Polarization: -51.84 SS G_CDS: 0.08 Total: -51.76 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.78 Total: -1.69 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Total: -73.45 3.59 -69.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815390877.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.576 kcal (2) G-P(sol) polarization free energy of solvation -73.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds