Wall clock time and date at job start Mon Mar 30 2020 00:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86808 * 119.99962 * 2 1 4 4 H 1.48507 * 109.47002 * 240.00041 * 3 2 1 5 5 H 1.48499 * 109.46728 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47013 * 120.00206 * 3 2 1 7 7 C 1.38799 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00063 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99726 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99918 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47012 * 180.02562 * 10 9 7 12 12 O 1.20822 * 120.00428 * 0.02562 * 11 10 9 13 13 O 1.34239 * 119.99727 * 180.02562 * 11 10 9 14 14 C 1.45204 * 116.99669 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46973 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47092 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47192 * 179.97438 * 16 15 14 18 18 C 1.39874 * 126.04031 * 269.99886 * 17 16 15 19 19 N 1.30836 * 108.20052 * 179.73886 * 18 17 16 20 20 N 1.40084 * 108.20904 * 0.40640 * 19 18 17 21 21 H 0.97001 * 126.04219 * 179.85882 * 20 19 18 22 22 C 1.34947 * 107.92164 * 359.58781 * 20 19 18 23 23 H 0.96997 * 119.99866 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47162 * 59.99947 * 10 9 7 25 25 H 1.09000 * 109.47219 * 299.99834 * 10 9 7 26 26 H 1.08997 * 109.46967 * 59.99800 * 14 13 11 27 27 H 1.09002 * 109.47040 * 300.00077 * 14 13 11 28 28 H 1.08994 * 109.47227 * 59.99324 * 15 14 13 29 29 H 1.09004 * 109.46607 * 299.99638 * 15 14 13 30 30 H 1.09007 * 109.47384 * 59.99836 * 16 15 14 31 31 H 1.09002 * 109.46954 * 299.99853 * 16 15 14 32 32 H 1.08001 * 125.89534 * 0.02562 * 18 17 16 33 33 H 1.08006 * 126.12506 * 180.22115 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6965 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9874 -5.3026 -0.0012 12 8 0.7957 -5.5015 -0.0021 13 8 2.8408 -6.3389 -0.0008 14 6 2.2611 -7.6702 -0.0020 15 6 3.3801 -8.7136 -0.0007 16 6 2.7693 -10.1164 -0.0026 17 6 3.8714 -11.1441 -0.0019 18 6 4.4748 -11.7045 -1.1326 19 7 5.3890 -12.5501 -0.7312 20 7 5.3899 -12.5615 0.6696 21 1 5.9657 -13.0991 1.2356 22 6 4.4523 -11.6880 1.0926 23 1 -0.4850 0.8400 -0.0004 24 1 3.1245 -3.7313 0.8894 25 1 3.1245 -3.7313 -0.8905 26 1 1.6459 -7.7977 -0.8927 27 1 1.6440 -7.7986 0.8873 28 1 3.9950 -8.5858 0.8901 29 1 3.9975 -8.5853 -0.8898 30 1 2.1547 -10.2439 -0.8938 31 1 2.1516 -10.2449 0.8862 32 1 4.2315 -11.4750 -2.1595 33 1 4.2088 -11.4634 2.1206 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816160241.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:16 Heat of formation + Delta-G solvation = -27.742896 kcal Electronic energy + Delta-G solvation = -16828.178331 eV Core-core repulsion = 13788.620922 eV Total energy + Delta-G solvation = -3039.557409 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.49700 -39.95093 -36.44881 -34.71464 -32.47662 -31.71542 -30.58220 -29.37369 -25.96599 -25.48420 -22.42602 -21.95989 -20.95768 -20.23571 -18.13129 -17.85617 -17.04331 -16.50511 -15.67583 -15.00622 -14.92891 -14.83858 -14.65723 -14.16032 -13.64984 -13.49394 -12.86558 -12.79083 -12.58075 -12.43172 -11.98205 -11.43715 -11.19595 -11.08779 -11.05531 -10.84305 -10.79248 -10.31126 -10.00129 -9.97103 -9.90061 -9.09911 -8.82485 -8.34988 -6.59181 -6.26252 -3.98877 1.55123 2.39569 2.56564 2.70527 2.73752 3.22518 3.24957 3.28232 3.55653 4.15903 4.41138 4.55255 4.71075 4.87473 5.01657 5.09374 5.14403 5.23261 5.26728 5.40263 5.46618 5.57949 5.65464 5.69090 5.80575 6.04273 6.06063 6.10649 6.29963 6.75970 6.90257 7.30002 7.56009 8.21902 8.31138 9.19047 10.81185 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.058021 B = 0.002503 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.469852 B =11182.872592 C =11454.119959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.922 3.078 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.536 4.536 8 H 0.075 0.925 9 S -0.059 6.059 10 C -0.129 4.129 11 C 0.479 3.521 12 O -0.489 6.489 13 O -0.362 6.362 14 C 0.064 3.936 15 C -0.113 4.113 16 C -0.039 4.039 17 C -0.233 4.233 18 C 0.057 3.943 19 N -0.298 5.298 20 N -0.480 5.480 21 H 0.439 0.561 22 C 0.061 3.939 23 H 0.270 0.730 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.184 0.816 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.981 -22.040 1.977 23.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.748 3.252 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.094 0.906 9 S 0.167 5.833 10 C -0.277 4.277 11 C 0.320 3.680 12 O -0.375 6.375 13 O -0.281 6.281 14 C -0.010 4.010 15 C -0.151 4.151 16 C -0.077 4.077 17 C -0.244 4.244 18 C -0.130 4.130 19 N -0.121 5.121 20 N -0.188 5.188 21 H 0.282 0.718 22 C -0.087 4.087 23 H 0.080 0.920 24 H 0.120 0.880 25 H 0.120 0.880 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.201 0.799 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 8.215 -23.053 1.605 24.525 hybrid contribution 1.478 1.512 0.604 2.199 sum 9.693 -21.540 2.209 23.724 Atomic orbital electron populations 1.70000 1.05979 1.27728 1.46551 1.25004 0.95068 0.99100 0.94355 0.86178 0.79202 0.80964 0.78903 1.19841 1.20788 1.19851 1.22804 0.94993 0.91199 1.59438 0.90644 1.85402 1.04459 0.96554 1.96885 1.23292 1.06895 0.91066 1.06426 1.23278 0.85190 0.87148 0.72377 1.90661 1.16971 1.85711 1.44164 1.86501 1.41314 1.15470 1.84773 1.23017 0.96229 0.79142 1.02616 1.21567 0.97605 0.92035 1.03843 1.19764 0.94431 0.90363 1.03164 1.20076 1.05920 1.06573 0.91857 1.23892 0.94041 0.94885 1.00184 1.77338 1.22602 1.23227 0.88899 1.46309 1.31447 1.35187 1.05831 0.71767 1.22453 0.92468 0.93559 1.00221 0.92025 0.87977 0.87953 0.91264 0.91360 0.90964 0.90743 0.90602 0.90928 0.79920 0.80626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.78 13.22 55.49 0.73 -25.04 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 8 H 0.08 2.00 7.80 -52.49 -0.41 1.59 16 9 S -0.06 -1.59 20.58 -107.50 -2.21 -3.80 16 10 C -0.13 -2.64 6.27 36.01 0.23 -2.41 16 11 C 0.48 9.22 7.98 36.01 0.29 9.51 16 12 O -0.49 -10.76 15.61 -18.75 -0.29 -11.05 16 13 O -0.36 -5.74 10.22 -39.28 -0.40 -6.14 16 14 C 0.06 0.78 5.47 37.16 0.20 0.99 16 15 C -0.11 -1.02 5.58 -26.73 -0.15 -1.17 16 16 C -0.04 -0.28 5.70 -27.88 -0.16 -0.44 16 17 C -0.23 -1.83 5.35 -105.05 -0.56 -2.39 16 18 C 0.06 0.49 11.96 -17.36 -0.21 0.29 16 19 N -0.30 -2.93 12.70 30.63 0.39 -2.55 16 20 N -0.48 -3.36 7.36 30.45 0.22 -3.14 16 21 H 0.44 1.70 8.96 -182.61 -1.64 0.06 16 22 C 0.06 0.40 11.90 -17.22 -0.21 0.19 16 23 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.10 1.93 8.14 -51.92 -0.42 1.51 16 25 H 0.10 1.94 8.14 -51.92 -0.42 1.52 16 26 H 0.07 0.84 8.13 -51.93 -0.42 0.41 16 27 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.18 0.60 8.06 -52.48 -0.42 0.18 16 LS Contribution 312.07 15.07 4.70 4.70 Total: -1.00 -34.68 312.07 -7.66 -42.34 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -5.41 Total: -3.22 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: -0.37 Total: -8.22 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: 1.35 Total: -30.73 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.69 Total: -17.19 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.68 -7.66 -42.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816160241.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.595 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds