Wall clock time and date at job start Mon Mar 30 2020 00:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86808 * 119.99962 * 2 1 4 4 H 1.48507 * 109.47002 * 240.00041 * 3 2 1 5 5 H 1.48499 * 109.46728 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47013 * 120.00206 * 3 2 1 7 7 C 1.38799 * 120.00288 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00063 * 179.97438 * 7 2 1 9 9 S 1.76198 * 119.99726 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99918 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47012 * 180.02562 * 10 9 7 12 12 O 1.20822 * 120.00428 * 0.02562 * 11 10 9 13 13 O 1.34239 * 119.99727 * 180.02562 * 11 10 9 14 14 C 1.45204 * 116.99669 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46973 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.47092 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47192 * 179.97438 * 16 15 14 18 18 C 1.39874 * 126.04031 * 269.99886 * 17 16 15 19 19 N 1.30836 * 108.20052 * 179.73886 * 18 17 16 20 20 N 1.40084 * 108.20904 * 0.40640 * 19 18 17 21 21 H 0.97001 * 126.04219 * 179.85882 * 20 19 18 22 22 C 1.34947 * 107.92164 * 359.58781 * 20 19 18 23 23 H 0.96997 * 119.99866 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47162 * 59.99947 * 10 9 7 25 25 H 1.09000 * 109.47219 * 299.99834 * 10 9 7 26 26 H 1.08997 * 109.46967 * 59.99800 * 14 13 11 27 27 H 1.09002 * 109.47040 * 300.00077 * 14 13 11 28 28 H 1.08994 * 109.47227 * 59.99324 * 15 14 13 29 29 H 1.09004 * 109.46607 * 299.99638 * 15 14 13 30 30 H 1.09007 * 109.47384 * 59.99836 * 16 15 14 31 31 H 1.09002 * 109.46954 * 299.99853 * 16 15 14 32 32 H 1.08001 * 125.89534 * 0.02562 * 18 17 16 33 33 H 1.08006 * 126.12506 * 180.22115 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6965 -1.2126 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8913 -0.0005 11 6 1.9874 -5.3026 -0.0012 12 8 0.7957 -5.5015 -0.0021 13 8 2.8408 -6.3389 -0.0008 14 6 2.2611 -7.6702 -0.0020 15 6 3.3801 -8.7136 -0.0007 16 6 2.7693 -10.1164 -0.0026 17 6 3.8714 -11.1441 -0.0019 18 6 4.4748 -11.7045 -1.1326 19 7 5.3890 -12.5501 -0.7312 20 7 5.3899 -12.5615 0.6696 21 1 5.9657 -13.0991 1.2356 22 6 4.4523 -11.6880 1.0926 23 1 -0.4850 0.8400 -0.0004 24 1 3.1245 -3.7313 0.8894 25 1 3.1245 -3.7313 -0.8905 26 1 1.6459 -7.7977 -0.8927 27 1 1.6440 -7.7986 0.8873 28 1 3.9950 -8.5858 0.8901 29 1 3.9975 -8.5853 -0.8898 30 1 2.1547 -10.2439 -0.8938 31 1 2.1516 -10.2449 0.8862 32 1 4.2315 -11.4750 -2.1595 33 1 4.2088 -11.4634 2.1206 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816160241.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:16 Heat of formation + Delta-G solvation = -50.010213 kcal Electronic energy + Delta-G solvation = -16829.143915 eV Core-core repulsion = 13788.620922 eV Total energy + Delta-G solvation = -3040.522993 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.05423 -41.39568 -37.77180 -35.53985 -34.59685 -32.32909 -31.68728 -30.56699 -27.71543 -26.67460 -23.10641 -22.73318 -22.31044 -20.82728 -19.85915 -18.80770 -18.39496 -17.77059 -17.12160 -16.87531 -16.01430 -15.92573 -15.53794 -15.31202 -14.67719 -14.56334 -14.43267 -13.75659 -13.65321 -13.37410 -13.18195 -13.13784 -12.85995 -12.65000 -12.30872 -12.02473 -11.78815 -11.59128 -11.47650 -11.30952 -11.13114 -10.58171 -10.36535 -9.39435 -8.72017 -8.35881 -6.15597 0.99908 1.07882 1.17278 1.42487 1.45950 1.55115 1.79726 2.01453 2.12634 2.25591 2.98933 3.28844 3.73719 3.92251 4.00192 4.11801 4.14907 4.21156 4.38097 4.46904 4.48055 4.66660 4.69809 4.82729 4.93712 5.00676 5.27409 5.42191 5.42357 5.47515 5.74618 6.19371 6.48336 6.74597 6.75031 7.05657 8.73067 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.058021 B = 0.002503 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.469852 B =11182.872592 C =11454.119959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 1.000 3.000 4 H -0.262 1.262 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.549 4.549 8 H 0.086 0.914 9 S -0.139 6.139 10 C -0.109 4.109 11 C 0.488 3.512 12 O -0.522 6.522 13 O -0.355 6.355 14 C 0.057 3.943 15 C -0.100 4.100 16 C -0.030 4.030 17 C -0.252 4.252 18 C 0.046 3.954 19 N -0.338 5.338 20 N -0.476 5.476 21 H 0.450 0.550 22 C 0.070 3.930 23 H 0.272 0.728 24 H 0.121 0.879 25 H 0.121 0.879 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.195 0.805 33 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.635 -22.328 2.621 24.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.821 3.179 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.696 4.696 8 H 0.104 0.896 9 S 0.088 5.912 10 C -0.258 4.258 11 C 0.330 3.670 12 O -0.411 6.411 13 O -0.272 6.272 14 C -0.016 4.016 15 C -0.138 4.138 16 C -0.069 4.069 17 C -0.263 4.263 18 C -0.140 4.140 19 N -0.161 5.161 20 N -0.185 5.185 21 H 0.296 0.704 22 C -0.078 4.078 23 H 0.081 0.919 24 H 0.140 0.860 25 H 0.139 0.861 26 H 0.088 0.912 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.212 0.788 33 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 9.903 -23.382 2.249 25.492 hybrid contribution 1.007 1.427 0.430 1.799 sum 10.910 -21.955 2.679 24.662 Atomic orbital electron populations 1.70156 1.07915 1.28838 1.47678 1.26123 0.95995 1.03285 0.93568 0.84986 0.77794 0.75582 0.79541 1.18679 1.20372 1.18623 1.23163 0.95509 0.91605 1.59355 0.89610 1.85512 1.09409 0.99106 1.97171 1.23092 1.04155 0.90324 1.08214 1.22943 0.84786 0.87505 0.71728 1.90655 1.18343 1.86183 1.45874 1.86477 1.40501 1.16295 1.83904 1.23406 0.97667 0.77644 1.02926 1.21529 0.96473 0.91939 1.03890 1.19689 0.94326 0.88825 1.04016 1.20198 1.06669 1.07378 0.92064 1.24228 0.93860 0.94702 1.01251 1.77279 1.23830 1.24522 0.90503 1.46378 1.31636 1.35277 1.05210 0.70377 1.23000 0.91187 0.92175 1.01427 0.91854 0.86050 0.86133 0.91216 0.90938 0.90550 0.91061 0.90246 0.89696 0.78810 0.77409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.78 13.22 21.65 0.29 -54.49 16 2 C 0.02 0.86 5.49 84.86 0.47 1.33 16 3 Si 1.00 42.81 29.55 68.60 2.03 44.83 16 4 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.55 -30.72 9.50 67.95 0.65 -30.08 16 8 H 0.09 4.45 7.80 -2.91 -0.02 4.43 16 9 S -0.14 -7.53 20.58 -56.49 -1.16 -8.69 16 10 C -0.11 -4.37 6.27 71.24 0.45 -3.92 16 11 C 0.49 18.35 7.98 71.24 0.57 18.92 16 12 O -0.52 -22.96 15.61 21.98 0.34 -22.62 16 13 O -0.35 -10.62 10.22 -51.51 -0.53 -11.14 16 14 C 0.06 1.30 5.47 71.98 0.39 1.69 16 15 C -0.10 -1.61 5.58 30.59 0.17 -1.44 16 16 C -0.03 -0.37 5.70 29.85 0.17 -0.20 16 17 C -0.25 -3.47 5.35 -20.14 -0.11 -3.57 16 18 C 0.05 0.75 11.96 85.24 1.02 1.76 16 19 N -0.34 -6.38 12.70 -57.02 -0.72 -7.11 16 20 N -0.48 -5.89 7.36 -57.59 -0.42 -6.31 16 21 H 0.45 2.77 8.96 -213.33 -1.91 0.86 16 22 C 0.07 0.74 11.90 83.54 0.99 1.74 16 23 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 24 H 0.12 4.38 8.14 -2.40 -0.02 4.36 16 25 H 0.12 4.38 8.14 -2.40 -0.02 4.36 16 26 H 0.07 1.60 8.13 -2.39 -0.02 1.58 16 27 H 0.07 1.61 8.13 -2.39 -0.02 1.59 16 28 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.20 2.37 8.06 -2.91 -0.02 2.35 16 33 H 0.21 0.66 8.06 -2.91 -0.02 0.64 16 Total: -1.00 -75.20 312.07 3.80 -71.40 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -0.79 Total: 7.89 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 4.77 Total: -13.76 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -0.86 Total: -67.91 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.18 Total: -33.76 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.83 kcal Atomic # 16 Polarization: -7.53 SS G_CDS: -1.16 Total: -8.69 kcal Total: -75.20 3.80 -71.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816160241.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.386 kcal (2) G-P(sol) polarization free energy of solvation -75.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds