Wall clock time and date at job start Mon Mar 30 2020 00:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 N 1.35505 * 179.97438 * 2 1 4 4 C 1.46927 * 120.63005 * 285.98612 * 3 2 1 5 5 C 1.53625 * 108.54115 * 126.37391 * 4 3 2 6 6 C 1.53041 * 109.24457 * 54.85534 * 5 4 3 7 7 O 1.45197 * 109.46035 * 178.49321 * 6 5 4 8 8 C 1.34234 * 116.99869 * 270.06683 * 7 6 5 9 9 O 1.20819 * 119.99628 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.00010 * 180.02562 * 8 7 6 11 11 S 1.81000 * 109.47130 * 179.97438 * 10 8 7 12 12 C 1.76205 * 100.00100 * 179.97438 * 11 10 8 13 13 H 1.07995 * 119.99894 * 0.02562 * 12 11 10 14 14 C 1.38792 * 119.99964 * 179.97438 * 12 11 10 15 15 N 1.31629 * 120.00450 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00019 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47006 * 59.99853 * 16 14 12 18 18 H 1.48493 * 109.47070 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46959 * 300.00125 * 16 14 12 20 20 C 1.53042 * 109.53500 * 298.51293 * 6 5 4 21 21 C 1.46923 * 120.62948 * 106.27104 * 3 2 1 22 22 H 1.08998 * 109.58645 * 246.20208 * 4 3 2 23 23 H 1.09000 * 109.58596 * 6.62810 * 4 3 2 24 24 H 1.09004 * 109.63214 * 294.86296 * 5 4 3 25 25 H 1.09003 * 109.45677 * 174.74160 * 5 4 3 26 26 H 1.08995 * 109.44782 * 58.52316 * 6 5 4 27 27 H 1.09000 * 109.47176 * 300.00028 * 10 8 7 28 28 H 1.09001 * 109.47004 * 59.99838 * 10 8 7 29 29 H 0.96999 * 120.00458 * 180.02562 * 15 14 12 30 30 H 1.09001 * 109.49952 * 301.41105 * 20 6 5 31 31 H 1.09001 * 109.52297 * 181.33529 * 20 6 5 32 32 H 1.09007 * 109.58740 * 353.36951 * 21 3 2 33 33 H 1.08998 * 109.58936 * 113.64963 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 7 2.4910 0.0006 0.0000 4 6 3.2397 -0.3472 1.2154 5 6 4.2324 -1.4687 0.8734 6 6 5.1097 -1.0255 -0.2996 7 8 6.0735 -2.0680 -0.6037 8 6 7.2526 -2.0132 0.0356 9 8 7.4716 -1.1239 0.8236 10 6 8.3028 -3.0608 -0.2294 11 16 9.7677 -2.7144 0.7758 12 6 10.8013 -4.0532 0.2818 13 1 10.4463 -4.7703 -0.4435 14 6 12.0720 -4.1856 0.8241 15 7 12.5049 -3.3113 1.7078 16 14 13.1681 -5.6046 0.3000 17 1 13.4086 -5.5298 -1.1635 18 1 14.4645 -5.5203 1.0191 19 1 12.5026 -6.8911 0.6272 20 6 4.2320 -0.7688 -1.5268 21 6 3.2394 0.3552 -1.2136 22 1 3.7820 0.5278 1.5734 23 1 2.5483 -0.6912 1.9846 24 1 3.6854 -2.3706 0.5983 25 1 4.8605 -1.6744 1.7402 26 1 5.6372 -0.1098 -0.0325 27 1 7.9088 -4.0438 0.0287 28 1 8.5746 -3.0439 -1.2849 29 1 13.3931 -3.4036 2.0865 30 1 3.6851 -1.6773 -1.7793 31 1 4.8594 -0.4761 -2.3686 32 1 2.5477 0.4747 -2.0476 33 1 3.7796 1.2877 -1.0504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816251460.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:45 Heat of formation + Delta-G solvation = -52.000906 kcal Electronic energy + Delta-G solvation = -17618.496439 eV Core-core repulsion = 14577.887123 eV Total energy + Delta-G solvation = -3040.609316 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.49769 -38.98171 -36.57109 -35.59270 -32.52032 -32.29602 -31.69259 -29.62087 -25.65302 -25.15638 -23.92223 -21.51875 -20.76114 -19.01228 -17.98974 -17.30039 -16.16889 -15.86801 -15.85109 -15.32906 -14.87845 -14.37732 -14.32843 -14.12410 -13.82122 -13.13163 -13.04942 -12.98313 -12.76204 -12.63709 -12.30469 -11.89396 -11.68874 -11.54150 -11.13968 -11.09033 -10.98336 -10.82958 -10.39073 -10.06333 -9.94361 -9.14107 -8.84469 -8.41126 -6.64525 -6.30718 -4.03823 2.08938 2.53739 2.55326 2.58270 2.96558 3.19387 3.20850 3.24815 3.45317 4.11604 4.17929 4.38625 4.56136 4.63508 4.79128 4.83738 4.88879 5.05201 5.16980 5.22873 5.29012 5.43179 5.50553 5.56885 5.72153 5.73916 5.88574 5.93576 6.03577 6.39701 6.63963 7.51735 7.91704 8.09972 8.26653 9.14825 10.76682 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.063810 B = 0.003117 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.698044 B = 8979.664217 C = 9101.511977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C 0.420 3.580 3 N -0.580 5.580 4 C 0.140 3.860 5 C -0.155 4.155 6 C 0.088 3.912 7 O -0.355 6.355 8 C 0.479 3.521 9 O -0.487 6.487 10 C -0.130 4.130 11 S -0.058 6.058 12 C -0.537 4.537 13 H 0.076 0.924 14 C 0.075 3.925 15 N -0.868 5.868 16 Si 0.921 3.079 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.273 1.273 20 C -0.134 4.134 21 C 0.140 3.860 22 H 0.081 0.919 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.270 0.730 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.561 5.210 -5.185 17.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.151 5.151 2 C 0.017 3.983 3 N -0.307 5.307 4 C 0.018 3.982 5 C -0.193 4.193 6 C 0.033 3.967 7 O -0.273 6.273 8 C 0.321 3.679 9 O -0.372 6.372 10 C -0.278 4.278 11 S 0.168 5.832 12 C -0.685 4.685 13 H 0.094 0.906 14 C -0.135 4.135 15 N -0.502 5.502 16 Si 0.747 3.253 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.198 1.198 20 C -0.173 4.173 21 C 0.018 3.982 22 H 0.099 0.901 23 H 0.107 0.893 24 H 0.099 0.901 25 H 0.108 0.892 26 H 0.108 0.892 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.728 6.408 -4.080 18.372 hybrid contribution 1.071 -1.901 -1.125 2.455 sum -15.657 4.507 -5.205 17.104 Atomic orbital electron populations 1.81945 1.05950 1.20836 1.06337 1.23746 0.86467 0.91866 0.96271 1.44597 0.96145 1.76463 1.13474 1.21742 0.93690 0.97944 0.84830 1.22492 0.98106 0.99303 0.99448 1.22567 0.87948 0.91234 0.94982 1.86600 1.25314 1.51051 1.64335 1.23327 0.81255 0.85629 0.77716 1.90654 1.78770 1.34901 1.32888 1.23307 0.98344 0.98954 1.07175 1.85394 1.05161 1.38785 1.53833 1.22797 1.02169 1.13229 1.30328 0.90635 1.24999 0.96963 0.97004 0.94505 1.69993 1.18867 1.34597 1.26786 0.86180 0.79012 0.81234 0.78845 1.19830 1.20765 1.19829 1.22071 0.97412 1.00066 0.97708 1.21650 0.93732 0.97302 0.85562 0.90066 0.89335 0.90133 0.89174 0.89171 0.87946 0.87941 0.91983 0.89965 0.89045 0.89182 0.90214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -5.61 18.54 41.27 0.76 -4.85 16 2 C 0.42 4.20 15.67 -102.19 -1.60 2.60 16 3 N -0.58 -4.49 2.99 -130.77 -0.39 -4.88 16 4 C 0.14 1.01 6.53 -3.49 -0.02 0.99 16 5 C -0.15 -1.41 5.73 -26.39 -0.15 -1.56 16 6 C 0.09 0.92 2.41 -26.69 -0.06 0.86 16 7 O -0.35 -4.94 9.88 -39.27 -0.39 -5.33 16 8 C 0.48 8.37 7.95 36.00 0.29 8.66 16 9 O -0.49 -9.68 15.08 -18.74 -0.28 -9.96 16 10 C -0.13 -2.50 6.27 36.00 0.23 -2.27 16 11 S -0.06 -1.49 20.58 -107.50 -2.21 -3.70 16 12 C -0.54 -14.69 9.50 30.94 0.29 -14.40 16 13 H 0.08 1.95 7.80 -52.49 -0.41 1.54 16 14 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 15 N -0.87 -25.26 13.22 55.49 0.73 -24.53 16 16 Si 0.92 20.73 29.55 -169.99 -5.02 15.70 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 20 C -0.13 -0.99 5.74 -26.61 -0.15 -1.14 16 21 C 0.14 0.84 6.50 -3.71 -0.02 0.81 16 22 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.09 0.56 7.93 -51.93 -0.41 0.15 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 26 H 0.09 1.01 7.16 -51.93 -0.37 0.64 16 27 H 0.10 1.83 8.14 -51.92 -0.42 1.41 16 28 H 0.10 1.83 8.14 -51.91 -0.42 1.40 16 29 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.44 7.93 -51.93 -0.41 0.03 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 307.22 15.07 4.63 4.63 Total: -1.00 -32.42 307.22 -7.60 -40.02 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -4.12 Total: -3.61 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -1.31 Total: -3.49 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 1.11 Total: -34.26 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.67 Total: -15.29 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.42 -7.60 -40.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816251460.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.981 kcal (2) G-P(sol) polarization free energy of solvation -32.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds