Wall clock time and date at job start Mon Mar 30 2020 00:50:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 N 1.35505 * 179.97438 * 2 1 4 4 C 1.46927 * 120.63005 * 285.98612 * 3 2 1 5 5 C 1.53625 * 108.54115 * 126.37391 * 4 3 2 6 6 C 1.53041 * 109.24457 * 54.85534 * 5 4 3 7 7 O 1.45197 * 109.46035 * 178.49321 * 6 5 4 8 8 C 1.34234 * 116.99869 * 270.06683 * 7 6 5 9 9 O 1.20819 * 119.99628 * 0.02562 * 8 7 6 10 10 C 1.50694 * 120.00010 * 180.02562 * 8 7 6 11 11 S 1.81000 * 109.47130 * 179.97438 * 10 8 7 12 12 C 1.76205 * 100.00100 * 179.97438 * 11 10 8 13 13 H 1.07995 * 119.99894 * 0.02562 * 12 11 10 14 14 C 1.38792 * 119.99964 * 179.97438 * 12 11 10 15 15 N 1.31629 * 120.00450 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00019 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47006 * 59.99853 * 16 14 12 18 18 H 1.48493 * 109.47070 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.46959 * 300.00125 * 16 14 12 20 20 C 1.53042 * 109.53500 * 298.51293 * 6 5 4 21 21 C 1.46923 * 120.62948 * 106.27104 * 3 2 1 22 22 H 1.08998 * 109.58645 * 246.20208 * 4 3 2 23 23 H 1.09000 * 109.58596 * 6.62810 * 4 3 2 24 24 H 1.09004 * 109.63214 * 294.86296 * 5 4 3 25 25 H 1.09003 * 109.45677 * 174.74160 * 5 4 3 26 26 H 1.08995 * 109.44782 * 58.52316 * 6 5 4 27 27 H 1.09000 * 109.47176 * 300.00028 * 10 8 7 28 28 H 1.09001 * 109.47004 * 59.99838 * 10 8 7 29 29 H 0.96999 * 120.00458 * 180.02562 * 15 14 12 30 30 H 1.09001 * 109.49952 * 301.41105 * 20 6 5 31 31 H 1.09001 * 109.52297 * 181.33529 * 20 6 5 32 32 H 1.09007 * 109.58740 * 353.36951 * 21 3 2 33 33 H 1.08998 * 109.58936 * 113.64963 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 7 2.4910 0.0006 0.0000 4 6 3.2397 -0.3472 1.2154 5 6 4.2324 -1.4687 0.8734 6 6 5.1097 -1.0255 -0.2996 7 8 6.0735 -2.0680 -0.6037 8 6 7.2526 -2.0132 0.0356 9 8 7.4716 -1.1239 0.8236 10 6 8.3028 -3.0608 -0.2294 11 16 9.7677 -2.7144 0.7758 12 6 10.8013 -4.0532 0.2818 13 1 10.4463 -4.7703 -0.4435 14 6 12.0720 -4.1856 0.8241 15 7 12.5049 -3.3113 1.7078 16 14 13.1681 -5.6046 0.3000 17 1 13.4086 -5.5298 -1.1635 18 1 14.4645 -5.5203 1.0191 19 1 12.5026 -6.8911 0.6272 20 6 4.2320 -0.7688 -1.5268 21 6 3.2394 0.3552 -1.2136 22 1 3.7820 0.5278 1.5734 23 1 2.5483 -0.6912 1.9846 24 1 3.6854 -2.3706 0.5983 25 1 4.8605 -1.6744 1.7402 26 1 5.6372 -0.1098 -0.0325 27 1 7.9088 -4.0438 0.0287 28 1 8.5746 -3.0439 -1.2849 29 1 13.3931 -3.4036 2.0865 30 1 3.6851 -1.6773 -1.7793 31 1 4.8594 -0.4761 -2.3686 32 1 2.5477 0.4747 -2.0476 33 1 3.7796 1.2877 -1.0504 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000816251460.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:44 Heat of formation + Delta-G solvation = -68.767223 kcal Electronic energy + Delta-G solvation = -17619.223481 eV Core-core repulsion = 14577.887123 eV Total energy + Delta-G solvation = -3041.336358 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.66222 -39.82731 -37.67618 -36.55524 -34.59343 -33.15319 -32.30509 -31.08948 -27.70103 -25.99580 -24.56912 -22.58748 -21.74378 -19.93076 -19.61735 -18.68973 -17.34534 -17.11591 -16.87302 -16.57271 -16.09328 -16.00398 -15.26026 -15.03928 -14.76459 -14.50436 -14.20284 -14.03590 -13.66412 -13.62866 -13.25511 -13.18337 -12.86687 -12.76611 -12.64755 -12.57082 -12.25848 -11.83769 -11.68835 -11.53093 -11.24667 -11.12864 -10.35573 -9.51545 -8.70528 -8.35850 -6.14808 1.06247 1.18966 1.41617 1.43659 1.45656 1.54903 1.78882 1.91698 2.19940 2.25726 2.99201 3.28118 3.54724 3.67702 3.72947 3.94457 4.00715 4.16259 4.21827 4.29045 4.48163 4.54645 4.60457 4.68318 4.78196 4.85708 5.06962 5.08861 5.28026 5.42605 5.46984 5.79198 6.19485 6.76629 7.06205 7.17265 8.72915 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.063810 B = 0.003117 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.698044 B = 8979.664217 C = 9101.511977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C 0.438 3.562 3 N -0.575 5.575 4 C 0.144 3.856 5 C -0.150 4.150 6 C 0.078 3.922 7 O -0.347 6.347 8 C 0.490 3.510 9 O -0.516 6.516 10 C -0.112 4.112 11 S -0.135 6.135 12 C -0.549 4.549 13 H 0.085 0.915 14 C 0.017 3.983 15 N -0.909 5.909 16 Si 0.997 3.003 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.263 1.263 20 C -0.125 4.125 21 C 0.140 3.860 22 H 0.094 0.906 23 H 0.098 0.902 24 H 0.081 0.919 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.119 0.881 28 H 0.120 0.880 29 H 0.272 0.728 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.107 0.893 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.225 4.633 -6.575 18.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.195 5.195 2 C 0.035 3.965 3 N -0.302 5.302 4 C 0.022 3.978 5 C -0.189 4.189 6 C 0.024 3.976 7 O -0.265 6.265 8 C 0.332 3.668 9 O -0.404 6.404 10 C -0.260 4.260 11 S 0.092 5.908 12 C -0.697 4.697 13 H 0.103 0.897 14 C -0.188 4.188 15 N -0.546 5.546 16 Si 0.819 3.181 17 H -0.187 1.187 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.164 4.164 21 C 0.018 3.982 22 H 0.112 0.888 23 H 0.116 0.884 24 H 0.100 0.900 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.137 0.863 28 H 0.138 0.862 29 H 0.081 0.919 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.411 5.831 -5.491 19.166 hybrid contribution 1.168 -1.680 -0.727 2.171 sum -16.243 4.151 -6.218 17.881 Atomic orbital electron populations 1.81962 1.07293 1.22467 1.07809 1.23756 0.86784 0.90924 0.95017 1.44810 0.95224 1.75923 1.14229 1.21767 0.93403 0.97755 0.84881 1.22440 0.98014 1.00145 0.98311 1.23007 0.87523 0.89922 0.97182 1.86566 1.24336 1.52231 1.63319 1.22863 0.81958 0.84601 0.77369 1.90650 1.79550 1.35918 1.34264 1.23099 0.96023 1.00330 1.06544 1.85472 1.09151 1.39705 1.56473 1.23165 1.02688 1.13418 1.30407 0.89689 1.26083 0.98586 0.99847 0.94333 1.70147 1.19412 1.36772 1.28233 0.85021 0.76724 0.77594 0.78796 1.18661 1.20435 1.18729 1.22065 0.97130 1.00696 0.96462 1.21834 0.93614 0.97275 0.85443 0.88812 0.88371 0.90038 0.90699 0.89750 0.86337 0.86177 0.91869 0.89962 0.87847 0.87463 0.88447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.77 18.54 17.21 0.32 -11.45 16 2 C 0.44 7.97 15.67 184.39 2.89 10.87 16 3 N -0.58 -7.49 2.99 -567.63 -1.69 -9.18 16 4 C 0.14 1.78 6.53 86.51 0.57 2.34 16 5 C -0.15 -2.52 5.73 30.82 0.18 -2.35 16 6 C 0.08 1.50 2.41 30.62 0.07 1.57 16 7 O -0.35 -9.10 9.88 -51.45 -0.51 -9.61 16 8 C 0.49 16.73 7.95 71.23 0.57 17.29 16 9 O -0.52 -20.55 15.08 21.98 0.33 -20.22 16 10 C -0.11 -4.19 6.27 71.23 0.45 -3.75 16 11 S -0.14 -7.04 20.58 -56.49 -1.16 -8.20 16 12 C -0.55 -30.03 9.50 67.95 0.65 -29.38 16 13 H 0.09 4.31 7.80 -2.91 -0.02 4.29 16 14 C 0.02 0.92 5.49 84.86 0.47 1.38 16 15 N -0.91 -53.80 13.22 21.65 0.29 -53.51 16 16 Si 1.00 42.06 29.55 68.60 2.03 44.09 16 17 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 18 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 20 C -0.12 -1.50 5.74 30.67 0.18 -1.32 16 21 C 0.14 1.25 6.50 86.36 0.56 1.81 16 22 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.10 1.06 7.93 -2.39 -0.02 1.04 16 24 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 26 H 0.08 1.76 7.16 -2.39 -0.02 1.75 16 27 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 28 H 0.12 4.10 8.14 -2.40 -0.02 4.08 16 29 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.11 0.67 7.93 -2.38 -0.02 0.65 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -70.84 307.22 7.28 -63.55 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.12 Total: 6.08 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 6.57 Total: -1.54 kcal Atomic # 7 Polarization: -73.06 SS G_CDS: -1.09 Total: -74.15 kcal Atomic # 8 Polarization: -29.66 SS G_CDS: -0.18 Total: -29.83 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Atomic # 16 Polarization: -7.04 SS G_CDS: -1.16 Total: -8.20 kcal Total: -70.84 7.28 -63.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816251460.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.214 kcal (2) G-P(sol) polarization free energy of solvation -70.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds