Wall clock time and date at job start Mon Mar 30 2020 02:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.32214 * 119.81776 * 2 1 4 4 O 1.21257 * 122.89552 * 0.02562 * 3 2 1 5 5 C 1.51117 * 114.20414 * 180.27772 * 3 2 1 6 6 S 1.82383 * 103.49399 * 359.75741 * 5 3 2 7 7 C 1.36750 * 119.81448 * 179.80036 * 2 1 3 8 8 C 1.36437 * 126.26690 * 0.02562 * 7 2 1 9 9 C 1.40392 * 120.00298 * 351.91061 * 8 7 2 10 10 O 1.21900 * 119.99820 * 307.00240 * 9 8 7 11 11 N 1.34777 * 120.00017 * 126.72694 * 9 8 7 12 12 C 1.46503 * 119.99744 * 180.27835 * 11 9 8 13 13 C 1.53000 * 109.46949 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.47457 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99519 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00328 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99679 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99966 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46966 * 90.00349 * 18 16 14 20 20 H 1.48503 * 109.47028 * 210.00422 * 18 16 14 21 21 H 1.48498 * 109.47241 * 330.00229 * 18 16 14 22 22 H 1.09006 * 109.46660 * 275.87906 * 1 2 3 23 23 H 1.09000 * 109.47105 * 35.87798 * 1 2 3 24 24 H 1.09001 * 109.47075 * 155.88044 * 1 2 3 25 25 H 1.08996 * 110.61764 * 241.25962 * 5 3 2 26 26 H 1.08998 * 110.61318 * 118.25784 * 5 3 2 27 27 H 1.08003 * 119.99867 * 171.91571 * 8 7 2 28 28 H 0.96994 * 119.99909 * 0.27267 * 11 9 8 29 29 H 1.08996 * 109.46999 * 299.99801 * 12 11 9 30 30 H 1.09001 * 109.47037 * 60.00000 * 12 11 9 31 31 H 1.09002 * 109.47002 * 300.00140 * 13 12 11 32 32 H 1.09004 * 109.47213 * 59.99540 * 13 12 11 33 33 H 0.96997 * 119.99718 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1225 1.1471 0.0000 4 8 1.5666 2.2247 0.0005 5 6 3.6264 0.9993 -0.0067 6 16 3.8765 -0.8073 -0.0046 7 6 2.1450 -1.1865 0.0041 8 6 1.5918 -2.4337 0.0080 9 6 0.2068 -2.5868 0.1790 10 8 -0.3508 -2.0680 1.1308 11 7 -0.5072 -3.3028 -0.7121 12 6 -1.9534 -3.4575 -0.5369 13 6 -2.5172 -4.3077 -1.6771 14 6 -4.0048 -4.4674 -1.4967 15 1 -4.4988 -4.0080 -0.6532 16 6 -4.7354 -5.1991 -2.4088 17 7 -4.1339 -5.7580 -3.4361 18 14 -6.5794 -5.3964 -2.1854 19 1 -7.2836 -4.2904 -2.8827 20 1 -7.0110 -6.6969 -2.7579 21 1 -6.9095 -5.3587 -0.7381 22 1 -0.3633 0.1053 1.0223 23 1 -0.3633 0.8327 -0.6023 24 1 -0.3633 -0.9380 -0.4200 25 1 4.0601 1.4478 0.8871 26 1 4.0518 1.4446 -0.9060 27 1 2.2194 -3.3032 -0.1205 28 1 -0.0635 -3.7156 -1.4694 29 1 -2.1536 -3.9479 0.4157 30 1 -2.4277 -2.4761 -0.5471 31 1 -2.3170 -3.8169 -2.6296 32 1 -2.0430 -5.2891 -1.6674 33 1 -4.6477 -6.2730 -4.0776 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821848686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:21 Heat of formation + Delta-G solvation = -26.805502 kcal Electronic energy + Delta-G solvation = -18085.317735 eV Core-core repulsion = 15045.800974 eV Total energy + Delta-G solvation = -3039.516761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.50586 -39.69346 -36.93455 -34.90999 -32.94496 -32.05271 -31.24028 -29.56533 -27.08927 -25.23056 -23.61869 -21.44068 -20.88778 -19.63935 -18.56991 -17.33037 -16.92018 -16.57163 -16.08443 -15.82806 -15.40381 -14.62348 -14.52653 -14.21264 -13.97735 -13.82292 -13.31574 -13.10927 -12.83884 -12.32954 -11.82177 -11.66059 -11.39936 -11.25042 -11.00134 -10.67757 -10.58856 -10.32247 -9.94680 -9.55473 -9.26860 -9.17969 -8.59520 -8.41168 -7.97581 -6.12284 -4.15360 0.66209 0.78156 1.20868 2.15705 2.36537 2.97442 3.27704 3.34141 3.37919 3.55514 3.85542 4.40331 4.43134 4.68864 4.95264 5.16572 5.25006 5.37200 5.45436 5.54802 5.81403 5.90636 6.26710 6.28549 6.64021 6.67857 6.81408 7.23917 7.47260 7.57002 7.84987 7.89377 8.23063 8.49856 8.90587 9.49839 10.99245 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.037904 B = 0.003576 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.533555 B = 7827.972031 C = 8156.859017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.540 5.540 3 C 0.520 3.480 4 O -0.489 6.489 5 C -0.141 4.141 6 S -0.071 6.071 7 C 0.162 3.838 8 C -0.224 4.224 9 C 0.552 3.448 10 O -0.553 6.553 11 N -0.716 5.716 12 C 0.119 3.881 13 C 0.012 3.988 14 C -0.523 4.523 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 H 0.088 0.912 23 H 0.075 0.925 24 H 0.102 0.898 25 H 0.146 0.854 26 H 0.145 0.855 27 H 0.163 0.837 28 H 0.401 0.599 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.022 0.978 32 H 0.023 0.977 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.649 9.424 4.429 20.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.261 5.261 3 C 0.306 3.694 4 O -0.363 6.363 5 C -0.293 4.293 6 S 0.169 5.831 7 C -0.049 4.049 8 C -0.261 4.261 9 C 0.340 3.660 10 O -0.435 6.435 11 N -0.366 5.366 12 C -0.003 4.003 13 C -0.025 4.025 14 C -0.561 4.561 15 H 0.078 0.922 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 H 0.107 0.893 23 H 0.093 0.907 24 H 0.120 0.880 25 H 0.164 0.836 26 H 0.163 0.837 27 H 0.180 0.820 28 H 0.235 0.765 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.041 0.959 32 H 0.042 0.958 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.019 9.746 4.929 21.071 hybrid contribution -1.812 0.157 -0.367 1.856 sum 16.207 9.903 4.563 19.533 Atomic orbital electron populations 1.22852 0.75281 1.04908 1.04790 1.44680 1.10312 1.04578 1.66539 1.19723 0.88953 0.83897 0.76841 1.90827 1.71881 1.26025 1.47571 1.24414 0.96858 0.97277 1.10705 1.86791 1.00709 1.02961 1.92640 1.21967 0.93727 0.88208 1.01036 1.20998 0.96693 0.94488 1.13935 1.16292 0.86756 0.79389 0.83576 1.90948 1.72557 1.48670 1.31306 1.46519 1.10668 1.52227 1.27147 1.21776 0.76523 1.00653 1.01379 1.19328 0.96232 0.94678 0.92298 1.21043 0.92259 1.32776 1.10060 0.92243 1.24992 0.98835 0.95344 0.95069 1.69951 1.36006 1.34121 1.13160 0.86518 0.85068 0.77500 0.78511 1.20562 1.21156 1.19709 0.89321 0.90682 0.87986 0.83625 0.83677 0.81979 0.76510 0.92260 0.92493 0.95935 0.95848 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 8.39 59.85 0.50 1.44 16 2 N -0.54 -7.00 2.95 -122.26 -0.36 -7.36 16 3 C 0.52 6.21 7.79 -11.91 -0.09 6.12 16 4 O -0.49 -7.30 17.03 5.58 0.09 -7.20 16 5 C -0.14 -1.03 7.36 36.21 0.27 -0.77 16 6 S -0.07 -0.60 23.35 -107.50 -2.51 -3.11 16 7 C 0.16 1.91 7.00 -16.01 -0.11 1.80 16 8 C -0.22 -2.74 9.69 -39.42 -0.38 -3.13 16 9 C 0.55 8.63 4.50 -15.45 -0.07 8.56 16 10 O -0.55 -10.35 13.61 5.01 0.07 -10.28 16 11 N -0.72 -11.51 5.47 -63.57 -0.35 -11.86 16 12 C 0.12 2.38 5.61 -4.04 -0.02 2.35 16 13 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 14 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 15 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -25.69 13.29 55.43 0.74 -24.96 16 18 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H 0.09 1.39 7.28 -51.93 -0.38 1.02 16 23 H 0.07 1.04 7.67 -51.93 -0.40 0.65 16 24 H 0.10 1.60 4.20 -51.93 -0.22 1.38 16 25 H 0.15 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.15 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.16 1.52 8.06 -52.48 -0.42 1.09 16 28 H 0.40 5.59 8.42 -40.82 -0.34 5.25 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 297.09 15.07 4.48 4.48 Total: -1.00 -31.86 297.09 -7.16 -39.03 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -3.84 Total: 1.60 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.46 Total: 3.61 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.03 Total: -44.17 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.16 Total: -17.48 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -0.60 SS G_CDS: -2.51 Total: -3.11 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.86 -7.16 -39.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821848686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.223 kcal (2) G-P(sol) polarization free energy of solvation -31.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds