Wall clock time and date at job start Mon Mar 30 2020 02:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.32214 * 119.81776 * 2 1 4 4 O 1.21257 * 122.89552 * 0.02562 * 3 2 1 5 5 C 1.51117 * 114.20414 * 180.27772 * 3 2 1 6 6 S 1.82383 * 103.49399 * 359.75741 * 5 3 2 7 7 C 1.36750 * 119.81448 * 179.80036 * 2 1 3 8 8 C 1.36437 * 126.26690 * 0.02562 * 7 2 1 9 9 C 1.40392 * 120.00298 * 351.91061 * 8 7 2 10 10 O 1.21900 * 119.99820 * 307.00240 * 9 8 7 11 11 N 1.34777 * 120.00017 * 126.72694 * 9 8 7 12 12 C 1.46503 * 119.99744 * 180.27835 * 11 9 8 13 13 C 1.53000 * 109.46949 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.47457 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99519 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00328 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99679 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99966 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46966 * 90.00349 * 18 16 14 20 20 H 1.48503 * 109.47028 * 210.00422 * 18 16 14 21 21 H 1.48498 * 109.47241 * 330.00229 * 18 16 14 22 22 H 1.09006 * 109.46660 * 275.87906 * 1 2 3 23 23 H 1.09000 * 109.47105 * 35.87798 * 1 2 3 24 24 H 1.09001 * 109.47075 * 155.88044 * 1 2 3 25 25 H 1.08996 * 110.61764 * 241.25962 * 5 3 2 26 26 H 1.08998 * 110.61318 * 118.25784 * 5 3 2 27 27 H 1.08003 * 119.99867 * 171.91571 * 8 7 2 28 28 H 0.96994 * 119.99909 * 0.27267 * 11 9 8 29 29 H 1.08996 * 109.46999 * 299.99801 * 12 11 9 30 30 H 1.09001 * 109.47037 * 60.00000 * 12 11 9 31 31 H 1.09002 * 109.47002 * 300.00140 * 13 12 11 32 32 H 1.09004 * 109.47213 * 59.99540 * 13 12 11 33 33 H 0.96997 * 119.99718 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1225 1.1471 0.0000 4 8 1.5666 2.2247 0.0005 5 6 3.6264 0.9993 -0.0067 6 16 3.8765 -0.8073 -0.0046 7 6 2.1450 -1.1865 0.0041 8 6 1.5918 -2.4337 0.0080 9 6 0.2068 -2.5868 0.1790 10 8 -0.3508 -2.0680 1.1308 11 7 -0.5072 -3.3028 -0.7121 12 6 -1.9534 -3.4575 -0.5369 13 6 -2.5172 -4.3077 -1.6771 14 6 -4.0048 -4.4674 -1.4967 15 1 -4.4988 -4.0080 -0.6532 16 6 -4.7354 -5.1991 -2.4088 17 7 -4.1339 -5.7580 -3.4361 18 14 -6.5794 -5.3964 -2.1854 19 1 -7.2836 -4.2904 -2.8827 20 1 -7.0110 -6.6969 -2.7579 21 1 -6.9095 -5.3587 -0.7381 22 1 -0.3633 0.1053 1.0223 23 1 -0.3633 0.8327 -0.6023 24 1 -0.3633 -0.9380 -0.4200 25 1 4.0601 1.4478 0.8871 26 1 4.0518 1.4446 -0.9060 27 1 2.2194 -3.3032 -0.1205 28 1 -0.0635 -3.7156 -1.4694 29 1 -2.1536 -3.9479 0.4157 30 1 -2.4277 -2.4761 -0.5471 31 1 -2.3170 -3.8169 -2.6296 32 1 -2.0430 -5.2891 -1.6674 33 1 -4.6477 -6.2730 -4.0776 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821848686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:20 Heat of formation + Delta-G solvation = -49.306406 kcal Electronic energy + Delta-G solvation = -18086.293447 eV Core-core repulsion = 15045.800974 eV Total energy + Delta-G solvation = -3040.492473 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.53483 -40.90960 -38.02313 -36.52720 -34.81328 -33.16902 -32.13136 -31.27019 -28.15800 -26.89213 -24.93151 -22.92398 -22.27825 -20.76521 -19.47415 -18.63169 -18.33724 -17.85877 -17.27587 -16.99638 -16.71113 -16.45749 -15.63986 -15.29270 -15.17621 -15.02374 -14.52262 -14.30658 -14.01181 -13.85605 -13.20782 -13.02567 -12.88860 -12.61164 -12.52364 -12.42954 -12.06186 -11.68182 -11.51009 -11.44493 -10.93167 -10.59383 -10.18272 -9.89836 -8.76081 -8.23351 -6.33408 -0.24847 -0.03467 0.48424 1.20590 1.42357 1.42501 1.44697 1.53948 1.78319 2.36862 2.59668 2.76898 3.11737 3.88694 3.95783 3.96081 4.21158 4.25255 4.31042 4.50683 4.56282 4.64565 4.72439 4.87073 4.89142 5.30792 5.50596 5.60609 5.69843 5.80430 6.17419 6.29274 6.60072 6.80287 7.23050 7.35988 8.88369 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.037904 B = 0.003576 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.533555 B = 7827.972031 C = 8156.859017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.549 5.549 3 C 0.514 3.486 4 O -0.525 6.525 5 C -0.133 4.133 6 S -0.022 6.022 7 C 0.156 3.844 8 C -0.240 4.240 9 C 0.557 3.443 10 O -0.588 6.588 11 N -0.712 5.712 12 C 0.140 3.860 13 C 0.022 3.978 14 C -0.546 4.546 15 H 0.059 0.941 16 C 0.008 3.992 17 N -0.926 5.926 18 Si 0.962 3.038 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.266 1.266 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.089 0.911 25 H 0.175 0.825 26 H 0.177 0.823 27 H 0.194 0.806 28 H 0.412 0.588 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.008 0.992 32 H 0.009 0.991 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.465 9.884 4.582 22.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.270 5.270 3 C 0.302 3.698 4 O -0.401 6.401 5 C -0.284 4.284 6 S 0.219 5.781 7 C -0.056 4.056 8 C -0.276 4.276 9 C 0.347 3.653 10 O -0.472 6.472 11 N -0.363 5.363 12 C 0.016 3.984 13 C -0.016 4.016 14 C -0.584 4.584 15 H 0.077 0.923 16 C -0.191 4.191 17 N -0.566 5.566 18 Si 0.787 3.213 19 H -0.199 1.199 20 H -0.206 1.206 21 H -0.191 1.191 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.107 0.893 25 H 0.193 0.807 26 H 0.195 0.805 27 H 0.211 0.789 28 H 0.248 0.752 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.028 0.972 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 19.888 10.197 5.075 22.919 hybrid contribution -2.289 0.084 -0.408 2.326 sum 17.599 10.282 4.668 20.910 Atomic orbital electron populations 1.22561 0.77086 1.04096 1.03497 1.44877 1.09718 1.05725 1.66686 1.20494 0.90907 0.82900 0.75452 1.90810 1.73115 1.27163 1.49058 1.24609 0.92959 0.97118 1.13688 1.86717 0.96423 1.03188 1.91759 1.22401 0.96206 0.87540 0.99423 1.20970 0.94795 0.95974 1.15895 1.16740 0.88033 0.77986 0.82511 1.90935 1.73636 1.49931 1.32734 1.46312 1.09051 1.52918 1.28004 1.21236 0.78867 0.99172 0.99115 1.19138 0.95118 0.94369 0.92948 1.21481 0.94027 1.32810 1.10127 0.92306 1.25841 1.03518 0.94988 0.94739 1.70053 1.37787 1.34801 1.13939 0.85484 0.79464 0.77642 0.78701 1.19877 1.20589 1.19060 0.91089 0.90690 0.89264 0.80714 0.80544 0.78922 0.75164 0.93353 0.93285 0.97349 0.97241 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.15 8.39 127.77 1.07 3.22 16 2 N -0.55 -13.75 2.95 -660.53 -1.95 -15.70 16 3 C 0.51 11.44 7.79 88.18 0.69 12.12 16 4 O -0.53 -15.32 17.03 -2.96 -0.05 -15.37 16 5 C -0.13 -1.44 7.36 71.37 0.53 -0.91 16 6 S -0.02 -0.29 23.35 -56.49 -1.32 -1.61 16 7 C 0.16 3.39 7.00 83.51 0.58 3.97 16 8 C -0.24 -5.53 9.69 22.37 0.22 -5.31 16 9 C 0.56 17.46 4.50 84.77 0.38 17.84 16 10 O -0.59 -22.53 13.61 -4.99 -0.07 -22.59 16 11 N -0.71 -23.17 5.47 -473.15 -2.59 -25.76 16 12 C 0.14 5.75 5.61 86.38 0.48 6.23 16 13 C 0.02 1.07 5.09 29.85 0.15 1.22 16 14 C -0.55 -30.03 9.11 25.60 0.23 -29.80 16 15 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 16 C 0.01 0.44 5.46 84.66 0.46 0.90 16 17 N -0.93 -53.79 13.29 21.45 0.28 -53.50 16 18 Si 0.96 43.28 29.54 68.60 2.03 45.30 16 19 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 20 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H 0.07 2.35 7.28 -2.38 -0.02 2.33 16 23 H 0.07 2.17 7.67 -2.39 -0.02 2.16 16 24 H 0.09 2.89 4.20 -2.39 -0.01 2.88 16 25 H 0.18 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.18 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.19 3.12 8.06 -2.91 -0.02 3.10 16 28 H 0.41 11.50 8.42 -92.71 -0.78 10.71 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 Total: -1.00 -70.05 297.09 1.50 -68.55 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.36 Total: 11.21 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 4.80 Total: 9.48 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -4.25 Total: -94.96 kcal Atomic # 8 Polarization: -37.85 SS G_CDS: -0.12 Total: -37.97 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -1.32 Total: -1.61 kcal Total: -70.05 1.50 -68.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821848686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.246 kcal (2) G-P(sol) polarization free energy of solvation -70.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds