Wall clock time and date at job start Mon Mar 30 2020 01:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.46881 * 2 1 4 4 N 1.29027 * 124.91893 * 89.99807 * 3 2 1 5 5 C 1.31780 * 117.12015 * 180.02562 * 4 3 2 6 6 C 1.50707 * 122.74285 * 179.97438 * 5 4 3 7 7 N 1.46496 * 109.46924 * 275.02014 * 6 5 4 8 8 C 1.36937 * 120.00478 * 270.00455 * 7 6 5 9 9 H 1.08002 * 119.99755 * 16.20864 * 8 7 6 10 10 C 1.38809 * 120.00236 * 196.21056 * 8 7 6 11 11 N 1.31623 * 120.00112 * 22.13561 * 10 8 7 12 12 Si 1.86806 * 120.00015 * 202.13260 * 10 8 7 13 13 H 1.48500 * 109.47022 * 59.99949 * 12 10 8 14 14 H 1.48500 * 109.46903 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47117 * 300.00009 * 12 10 8 16 16 C 1.46497 * 120.00007 * 90.00622 * 7 6 5 17 17 C 1.50694 * 109.47425 * 84.00582 * 16 7 6 18 18 O 1.20819 * 120.00165 * 0.02562 * 17 16 7 19 19 O 1.34235 * 119.99858 * 180.02562 * 17 16 7 20 20 C 1.33633 * 114.50764 * 0.23255 * 5 4 3 21 21 S 1.70977 * 124.91338 * 269.99984 * 3 2 1 22 22 H 1.09001 * 109.46885 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47052 * 299.99980 * 1 2 3 24 24 H 1.08999 * 109.47275 * 60.00584 * 1 2 3 25 25 H 1.08998 * 109.47052 * 240.00020 * 2 1 3 26 26 H 1.08999 * 109.47275 * 119.99416 * 2 1 3 27 27 H 1.08998 * 109.46807 * 155.02523 * 6 5 4 28 28 H 1.08997 * 109.47301 * 35.02489 * 6 5 4 29 29 H 0.97002 * 119.99658 * 179.97438 * 11 10 8 30 30 H 1.09005 * 109.47467 * 204.01328 * 16 7 6 31 31 H 1.09006 * 109.47175 * 324.00495 * 16 7 6 32 32 H 0.96707 * 116.99482 * 180.02562 * 19 17 16 33 33 H 1.08006 * 126.04101 * 179.77005 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2784 2.1172 1.0580 5 6 2.7131 3.3483 0.8792 6 6 3.0390 4.2721 2.0244 7 7 1.8165 4.9429 2.4737 8 6 1.4462 6.1373 1.9158 9 1 1.8885 6.4584 0.9843 10 6 0.5024 6.9355 2.5475 11 7 0.2833 6.7994 3.8382 12 14 -0.4565 8.2029 1.5658 13 1 -1.2239 7.5208 0.4929 14 1 -1.3944 8.9203 2.4664 15 1 0.4868 9.1755 0.9580 16 6 0.9902 4.3357 3.5200 17 6 1.5423 4.7037 4.8730 18 8 2.5249 5.4018 4.9550 19 8 0.9423 4.2557 5.9872 20 6 2.8361 3.7124 -0.4007 21 16 2.3585 2.3435 -1.4020 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 3.7624 5.0179 1.6951 28 1 3.4607 3.6956 2.8477 29 1 -0.3760 7.3575 4.2797 30 1 -0.0329 4.7018 3.4332 31 1 0.9989 3.2516 3.4066 32 1 1.3328 4.5185 6.8320 33 1 3.1712 4.6749 -0.7583 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000830314123.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:37 Heat of formation + Delta-G solvation = -27.257896 kcal Electronic energy + Delta-G solvation = -18787.905228 eV Core-core repulsion = 15748.368850 eV Total energy + Delta-G solvation = -3039.536378 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.47117 -38.61467 -35.74192 -34.43352 -33.79453 -31.47796 -29.52729 -27.35874 -26.25331 -24.99736 -22.70652 -21.33340 -20.02834 -19.22448 -17.42839 -16.67153 -16.51070 -15.30832 -15.26822 -14.92366 -14.39503 -14.16523 -14.10748 -13.53404 -13.41191 -13.14698 -12.70909 -12.08754 -11.79388 -11.68242 -11.49875 -11.29528 -11.07381 -10.92431 -10.76834 -10.52460 -10.22068 -10.04028 -9.96243 -9.25280 -9.18861 -8.97148 -8.60242 -8.26747 -7.11965 -5.95464 -3.28429 1.16103 1.77382 2.14226 3.27771 3.34706 3.40566 3.42547 3.92249 4.33534 4.40876 4.56637 5.04130 5.22545 5.25581 5.33387 5.47144 5.73025 5.73875 5.78979 5.90429 5.97910 6.20955 6.43524 6.46145 6.59704 6.73466 6.97281 7.04345 7.65092 7.87420 8.13718 8.27236 8.98171 9.44444 9.67380 10.10004 11.15515 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.006888 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.936727 B = 4064.322093 C = 4843.008238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.042 4.042 3 C 0.045 3.955 4 N -0.458 5.458 5 C 0.069 3.931 6 C 0.215 3.785 7 N -0.555 5.555 8 C -0.260 4.260 9 H 0.079 0.921 10 C 0.004 3.996 11 N -0.901 5.901 12 Si 0.909 3.091 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.282 1.282 16 C 0.191 3.809 17 C 0.480 3.520 18 O -0.517 6.517 19 O -0.543 6.543 20 C -0.239 4.239 21 S 0.064 5.936 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.258 0.742 30 H 0.111 0.889 31 H 0.058 0.942 32 H 0.380 0.620 33 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.486 -11.828 -7.029 13.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.083 4.083 3 C -0.234 4.234 4 N -0.172 5.172 5 C -0.065 4.065 6 C 0.085 3.915 7 N -0.273 5.273 8 C -0.388 4.388 9 H 0.097 0.903 10 C -0.194 4.194 11 N -0.545 5.545 12 Si 0.739 3.261 13 H -0.210 1.210 14 H -0.216 1.216 15 H -0.209 1.209 16 C 0.062 3.938 17 C 0.320 3.680 18 O -0.403 6.403 19 O -0.353 6.353 20 C -0.378 4.378 21 S 0.317 5.683 22 H 0.082 0.918 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.109 0.891 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.129 0.871 31 H 0.076 0.924 32 H 0.236 0.764 33 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 1.341 -12.022 -7.841 14.415 hybrid contribution -0.128 1.815 0.852 2.009 sum 1.213 -10.207 -6.988 12.430 Atomic orbital electron populations 1.21761 0.93749 1.02022 1.02971 1.20133 0.96588 0.88024 1.03578 1.26968 1.04050 1.01510 0.90904 1.66124 1.13623 1.06363 1.31137 1.21730 0.97896 0.90733 0.96096 1.19365 0.89134 0.91975 0.91028 1.43786 1.22932 1.21588 1.38994 1.19204 1.20696 0.96034 1.02882 0.90307 1.24831 1.01299 0.98264 0.95035 1.69879 1.35423 1.42067 1.07158 0.86253 0.79962 0.80690 0.79242 1.20960 1.21578 1.20854 1.20203 0.97320 0.94897 0.81422 1.25229 0.80698 0.75719 0.86370 1.90497 1.27765 1.35070 1.87015 1.84635 1.60429 1.72905 1.17362 1.26789 1.12444 1.03200 0.95389 1.83632 1.62849 1.07511 1.14278 0.91828 0.91676 0.92509 0.90262 0.89145 0.91046 0.92395 0.93128 0.87133 0.92400 0.76402 0.81071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.89 37.16 0.37 -1.18 16 2 C -0.04 -0.47 6.52 -27.88 -0.18 -0.65 16 3 C 0.04 0.68 6.64 -13.46 -0.09 0.59 16 4 N -0.46 -8.42 10.53 -8.06 -0.08 -8.51 16 5 C 0.07 1.32 6.32 -84.22 -0.53 0.79 16 6 C 0.22 4.60 6.07 -5.19 -0.03 4.57 16 7 N -0.55 -13.74 2.01 -175.99 -0.35 -14.09 16 8 C -0.26 -6.92 9.66 -15.06 -0.15 -7.07 16 9 H 0.08 2.03 7.92 -52.49 -0.42 1.61 16 10 C 0.00 0.11 4.86 -17.43 -0.08 0.03 16 11 N -0.90 -25.65 9.31 55.49 0.52 -25.13 16 12 Si 0.91 21.54 29.61 -169.99 -5.03 16.51 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 16 C 0.19 4.63 5.48 -5.20 -0.03 4.61 16 17 C 0.48 11.87 6.55 36.00 0.24 12.10 16 18 O -0.52 -14.38 16.89 -18.74 -0.32 -14.69 16 19 O -0.54 -11.40 13.42 -39.27 -0.53 -11.93 16 20 C -0.24 -4.06 11.12 29.12 0.32 -3.74 16 21 S 0.06 0.91 23.18 -107.50 -2.49 -1.59 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 1.48 8.00 -51.93 -0.42 1.07 16 28 H 0.06 1.24 8.07 -51.93 -0.42 0.82 16 29 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 30 H 0.11 2.89 6.35 -51.93 -0.33 2.56 16 31 H 0.06 1.30 8.12 -51.93 -0.42 0.87 16 32 H 0.38 6.34 9.10 45.56 0.41 6.75 16 33 H 0.17 2.68 8.06 -52.48 -0.42 2.25 16 LS Contribution 304.04 15.07 4.58 4.58 Total: -1.00 -32.36 304.04 -7.13 -39.49 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -3.26 Total: 5.31 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: -0.17 Total: 10.04 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.08 Total: -47.73 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.84 Total: -26.62 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.49 Total: -1.59 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.36 -7.13 -39.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830314123.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.233 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds