Wall clock time and date at job start Mon Mar 30 2020 01:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.46881 * 2 1 4 4 N 1.29027 * 124.91893 * 89.99807 * 3 2 1 5 5 C 1.31780 * 117.12015 * 180.02562 * 4 3 2 6 6 C 1.50707 * 122.74285 * 179.97438 * 5 4 3 7 7 N 1.46496 * 109.46924 * 275.02014 * 6 5 4 8 8 C 1.36937 * 120.00478 * 270.00455 * 7 6 5 9 9 H 1.08002 * 119.99755 * 16.20864 * 8 7 6 10 10 C 1.38809 * 120.00236 * 196.21056 * 8 7 6 11 11 N 1.31623 * 120.00112 * 22.13561 * 10 8 7 12 12 Si 1.86806 * 120.00015 * 202.13260 * 10 8 7 13 13 H 1.48500 * 109.47022 * 59.99949 * 12 10 8 14 14 H 1.48500 * 109.46903 * 180.02562 * 12 10 8 15 15 H 1.48502 * 109.47117 * 300.00009 * 12 10 8 16 16 C 1.46497 * 120.00007 * 90.00622 * 7 6 5 17 17 C 1.50694 * 109.47425 * 84.00582 * 16 7 6 18 18 O 1.20819 * 120.00165 * 0.02562 * 17 16 7 19 19 O 1.34235 * 119.99858 * 180.02562 * 17 16 7 20 20 C 1.33633 * 114.50764 * 0.23255 * 5 4 3 21 21 S 1.70977 * 124.91338 * 269.99984 * 3 2 1 22 22 H 1.09001 * 109.46885 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47052 * 299.99980 * 1 2 3 24 24 H 1.08999 * 109.47275 * 60.00584 * 1 2 3 25 25 H 1.08998 * 109.47052 * 240.00020 * 2 1 3 26 26 H 1.08999 * 109.47275 * 119.99416 * 2 1 3 27 27 H 1.08998 * 109.46807 * 155.02523 * 6 5 4 28 28 H 1.08997 * 109.47301 * 35.02489 * 6 5 4 29 29 H 0.97002 * 119.99658 * 179.97438 * 11 10 8 30 30 H 1.09005 * 109.47467 * 204.01328 * 16 7 6 31 31 H 1.09006 * 109.47175 * 324.00495 * 16 7 6 32 32 H 0.96707 * 116.99482 * 180.02562 * 19 17 16 33 33 H 1.08006 * 126.04101 * 179.77005 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2784 2.1172 1.0580 5 6 2.7131 3.3483 0.8792 6 6 3.0390 4.2721 2.0244 7 7 1.8165 4.9429 2.4737 8 6 1.4462 6.1373 1.9158 9 1 1.8885 6.4584 0.9843 10 6 0.5024 6.9355 2.5475 11 7 0.2833 6.7994 3.8382 12 14 -0.4565 8.2029 1.5658 13 1 -1.2239 7.5208 0.4929 14 1 -1.3944 8.9203 2.4664 15 1 0.4868 9.1755 0.9580 16 6 0.9902 4.3357 3.5200 17 6 1.5423 4.7037 4.8730 18 8 2.5249 5.4018 4.9550 19 8 0.9423 4.2557 5.9872 20 6 2.8361 3.7124 -0.4007 21 16 2.3585 2.3435 -1.4020 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5137 0.8900 27 1 3.7624 5.0179 1.6951 28 1 3.4607 3.6956 2.8477 29 1 -0.3760 7.3575 4.2797 30 1 -0.0329 4.7018 3.4332 31 1 0.9989 3.2516 3.4066 32 1 1.3328 4.5185 6.8320 33 1 3.1712 4.6749 -0.7583 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000830314123.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:37 Heat of formation + Delta-G solvation = -48.555416 kcal Electronic energy + Delta-G solvation = -18788.828758 eV Core-core repulsion = 15748.368850 eV Total energy + Delta-G solvation = -3040.459908 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.88779 -40.45119 -37.53226 -36.30692 -34.95573 -33.32902 -30.98652 -29.14734 -27.96784 -26.15963 -24.45146 -22.69025 -21.78463 -20.54141 -19.08147 -18.55439 -18.15557 -17.18372 -16.99163 -16.28824 -16.03586 -15.76072 -15.33457 -15.23819 -14.92269 -14.65831 -13.90670 -13.59229 -13.43233 -13.13539 -12.98113 -12.77653 -12.53707 -12.47902 -12.25226 -12.04749 -12.03467 -11.93413 -11.89291 -11.20087 -10.61964 -10.45660 -10.20724 -9.55345 -9.06135 -7.99199 -5.33526 -0.08313 0.58204 0.87914 1.45993 1.48827 1.55451 1.90631 1.96675 2.49663 2.73810 3.18458 3.30607 3.62819 4.06231 4.29372 4.32728 4.40258 4.46278 4.61113 4.78702 4.83014 4.95788 5.03415 5.06430 5.14177 5.17625 5.31298 5.41865 5.58410 6.08850 6.16073 6.94977 7.01004 7.54714 7.73510 8.12246 9.10257 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.006888 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.936727 B = 4064.322093 C = 4843.008238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.043 4.043 3 C 0.039 3.961 4 N -0.494 5.494 5 C 0.049 3.951 6 C 0.219 3.781 7 N -0.569 5.569 8 C -0.263 4.263 9 H 0.083 0.917 10 C -0.048 4.048 11 N -0.929 5.929 12 Si 0.972 3.028 13 H -0.277 1.277 14 H -0.296 1.296 15 H -0.278 1.278 16 C 0.197 3.803 17 C 0.484 3.516 18 O -0.554 6.554 19 O -0.533 6.533 20 C -0.257 4.257 21 S 0.137 5.863 22 H 0.091 0.909 23 H 0.039 0.961 24 H 0.057 0.943 25 H 0.111 0.889 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.048 0.952 29 H 0.251 0.749 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.402 0.598 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.131 -13.209 -8.946 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.084 4.084 3 C -0.239 4.239 4 N -0.209 5.209 5 C -0.084 4.084 6 C 0.090 3.910 7 N -0.288 5.288 8 C -0.393 4.393 9 H 0.101 0.899 10 C -0.243 4.243 11 N -0.575 5.575 12 Si 0.800 3.200 13 H -0.203 1.203 14 H -0.223 1.223 15 H -0.204 1.204 16 C 0.067 3.933 17 C 0.326 3.674 18 O -0.443 6.443 19 O -0.344 6.344 20 C -0.396 4.396 21 S 0.391 5.609 22 H 0.110 0.890 23 H 0.058 0.942 24 H 0.076 0.924 25 H 0.129 0.871 26 H 0.112 0.888 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.261 0.739 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.997 -13.440 -9.775 16.649 hybrid contribution 0.023 2.109 1.409 2.536 sum 1.020 -11.332 -8.366 14.123 Atomic orbital electron populations 1.21751 0.93201 1.03529 1.01718 1.20371 0.96892 0.85827 1.05331 1.27706 1.02421 1.02871 0.90916 1.66085 1.15400 1.06437 1.32994 1.21223 1.00011 0.91263 0.95878 1.19291 0.87988 0.92032 0.91643 1.43931 1.23965 1.21473 1.39395 1.19521 1.20382 0.96491 1.02872 0.89908 1.25564 1.02417 1.00484 0.95817 1.70020 1.35952 1.43168 1.08379 0.85265 0.78438 0.78508 0.77763 1.20284 1.22278 1.20403 1.20088 0.96207 0.95483 0.81513 1.25270 0.79996 0.74876 0.87300 1.90474 1.29350 1.36769 1.87705 1.84554 1.59814 1.72214 1.17868 1.26970 1.12041 1.04839 0.95775 1.83325 1.60993 1.04641 1.11914 0.88999 0.94206 0.92434 0.87085 0.88806 0.91298 0.93402 0.93959 0.89173 0.90934 0.73932 0.80341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.89 71.98 0.71 -1.95 16 2 C -0.04 -0.85 6.52 29.85 0.19 -0.65 16 3 C 0.04 1.11 6.64 88.52 0.59 1.70 16 4 N -0.49 -17.82 10.53 -179.40 -1.89 -19.70 16 5 C 0.05 1.88 6.32 41.52 0.26 2.14 16 6 C 0.22 9.57 6.07 85.64 0.52 10.09 16 7 N -0.57 -28.61 2.01 -710.69 -1.43 -30.04 16 8 C -0.26 -14.18 9.66 84.03 0.81 -13.37 16 9 H 0.08 4.27 7.92 -2.91 -0.02 4.25 16 10 C -0.05 -2.62 4.86 84.86 0.41 -2.21 16 11 N -0.93 -53.79 9.31 21.65 0.20 -53.59 16 12 Si 0.97 44.60 29.61 68.60 2.03 46.63 16 13 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 14 H -0.30 -13.79 7.11 99.48 0.71 -13.09 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 16 C 0.20 9.72 5.48 85.63 0.47 10.19 16 17 C 0.48 24.25 6.55 71.23 0.47 24.71 16 18 O -0.55 -31.34 16.89 21.99 0.37 -30.97 16 19 O -0.53 -22.18 13.42 -51.46 -0.69 -22.87 16 20 C -0.26 -8.41 11.12 66.77 0.74 -7.67 16 21 S 0.14 3.49 23.18 -56.49 -1.31 2.18 16 22 H 0.09 1.19 8.14 -2.39 -0.02 1.18 16 23 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.07 2.94 8.00 -2.39 -0.02 2.92 16 28 H 0.05 2.12 8.07 -2.39 -0.02 2.10 16 29 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 30 H 0.09 4.84 6.35 -2.38 -0.02 4.82 16 31 H 0.07 3.30 8.12 -2.38 -0.02 3.28 16 32 H 0.40 13.05 9.10 -74.05 -0.67 12.37 16 33 H 0.18 5.40 8.06 -2.91 -0.02 5.38 16 Total: -1.00 -69.65 304.04 2.92 -66.73 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.46 Total: 18.65 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: 5.18 Total: 22.98 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -3.12 Total: -103.33 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: -0.32 Total: -53.83 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.31 Total: 2.18 kcal Total: -69.65 2.92 -66.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000830314123.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.174 kcal (2) G-P(sol) polarization free energy of solvation -69.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds