Wall clock time and date at job start Mon Mar 30 2020 01:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31787 * 122.75058 * 2 1 4 4 C 1.29026 * 117.12327 * 180.02562 * 3 2 1 5 5 C 1.50700 * 124.91269 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47375 * 90.00452 * 5 4 3 7 7 C 1.36932 * 119.99783 * 89.99513 * 6 5 4 8 8 H 1.07999 * 120.00454 * 343.12599 * 7 6 5 9 9 C 1.38816 * 119.99565 * 162.84416 * 7 6 5 10 10 N 1.31613 * 120.00378 * 336.49835 * 9 7 6 11 11 Si 1.86805 * 119.99539 * 156.49365 * 9 7 6 12 12 H 1.48497 * 109.47095 * 60.00468 * 11 9 7 13 13 H 1.48504 * 109.46901 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47206 * 300.00069 * 11 9 7 15 15 C 1.46499 * 119.99760 * 270.00201 * 6 5 4 16 16 C 1.50698 * 109.47224 * 276.08728 * 15 6 5 17 17 O 1.20828 * 119.99738 * 0.02562 * 16 15 6 18 18 O 1.34224 * 120.00469 * 179.97438 * 16 15 6 19 19 S 1.70971 * 110.16899 * 0.23396 * 4 3 2 20 20 C 1.33643 * 122.75297 * 180.02562 * 2 1 3 21 21 C 1.50694 * 126.03495 * 359.97438 * 20 2 1 22 22 H 1.08995 * 109.46563 * 89.97506 * 1 2 3 23 23 H 1.09003 * 109.46964 * 209.97484 * 1 2 3 24 24 H 1.09000 * 109.46766 * 329.97378 * 1 2 3 25 25 H 1.08997 * 109.47356 * 330.00166 * 5 4 3 26 26 H 1.09000 * 109.47046 * 210.00649 * 5 4 3 27 27 H 0.97003 * 120.00091 * 179.97438 * 10 9 7 28 28 H 1.08994 * 109.47210 * 36.09048 * 15 6 5 29 29 H 1.08998 * 109.46843 * 156.08929 * 15 6 5 30 30 H 0.96700 * 117.00537 * 180.02562 * 18 16 15 31 31 H 1.09006 * 109.47487 * 89.99670 * 21 20 2 32 32 H 1.09006 * 109.47400 * 209.99503 * 21 20 2 33 33 H 1.09005 * 109.47258 * 329.99926 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5040 0.9819 -0.0005 5 6 4.4835 2.1271 -0.0012 6 7 4.8016 2.4985 1.3799 7 6 5.8514 1.9011 2.0249 8 1 6.2709 0.9837 1.6392 9 6 6.3804 2.4780 3.1714 10 7 6.2276 3.7668 3.3904 11 14 7.3089 1.4249 4.4036 12 1 8.4835 0.8051 3.7392 13 1 7.7687 2.2731 5.5326 14 1 6.4123 0.3592 4.9190 15 6 3.9964 3.5088 2.0707 16 6 4.5002 4.8833 1.7130 17 8 5.4356 5.0063 0.9581 18 8 3.9093 5.9709 2.2322 19 16 3.9333 -0.6731 -0.0076 20 6 2.2300 -1.1240 -0.0005 21 6 1.6848 -2.5288 -0.0006 22 1 -0.3632 0.0004 -1.0276 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3633 0.8898 0.5142 25 1 4.0431 2.9816 -0.5149 26 1 5.3957 1.8247 -0.5154 27 1 6.5969 4.1697 4.1917 28 1 2.9543 3.4132 1.7662 29 1 4.0752 3.3618 3.1478 30 1 4.2674 6.8310 1.9732 31 1 1.5528 -2.8674 -1.0283 32 1 2.3832 -3.1897 0.5128 33 1 0.7238 -2.5456 0.5136 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833000376.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:53 Heat of formation + Delta-G solvation = -28.825491 kcal Electronic energy + Delta-G solvation = -18729.020880 eV Core-core repulsion = 15689.416525 eV Total energy + Delta-G solvation = -3039.604354 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.44665 -38.69618 -35.93564 -34.45899 -33.10556 -31.37332 -29.58552 -28.25771 -26.66588 -24.65398 -23.25490 -21.55595 -20.05372 -18.39044 -17.46001 -16.81041 -16.65583 -15.40430 -15.24944 -14.68608 -14.40223 -14.16154 -13.56948 -13.55115 -13.17856 -12.91106 -12.83002 -12.53646 -12.06486 -11.96310 -11.73581 -11.45572 -11.02685 -10.90734 -10.69188 -10.65564 -10.27470 -10.10238 -9.99403 -9.32065 -9.07794 -8.69450 -8.64801 -8.13081 -7.21668 -6.01953 -3.36066 1.20525 1.87441 2.33114 3.23369 3.32786 3.38913 3.40969 3.87003 4.28570 4.49106 4.65130 5.16149 5.20171 5.26380 5.33829 5.48107 5.57404 5.62102 5.74568 5.90238 6.00635 6.03023 6.31266 6.39204 6.46420 6.72227 6.89297 6.93759 7.60782 7.83195 8.05224 8.31014 8.90035 9.39286 9.59436 10.00840 11.08755 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.007125 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.941016 B = 3928.837937 C = 4942.923711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.061 3.939 3 N -0.482 5.482 4 C 0.071 3.929 5 C 0.214 3.786 6 N -0.550 5.550 7 C -0.269 4.269 8 H 0.081 0.919 9 C 0.010 3.990 10 N -0.895 5.895 11 Si 0.908 3.092 12 H -0.281 1.281 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.189 3.811 16 C 0.480 3.520 17 O -0.514 6.514 18 O -0.543 6.543 19 S 0.111 5.889 20 C -0.257 4.257 21 C -0.066 4.066 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.260 0.740 28 H 0.060 0.940 29 H 0.110 0.890 30 H 0.382 0.618 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.174 -7.299 -5.252 12.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 N -0.197 5.197 4 C -0.210 4.210 5 C 0.082 3.918 6 N -0.269 5.269 7 C -0.398 4.398 8 H 0.099 0.901 9 C -0.190 4.190 10 N -0.538 5.538 11 Si 0.737 3.263 12 H -0.207 1.207 13 H -0.215 1.215 14 H -0.208 1.208 15 C 0.060 3.940 16 C 0.320 3.680 17 O -0.400 6.400 18 O -0.353 6.353 19 S 0.367 5.633 20 C -0.378 4.378 21 C -0.125 4.125 22 H 0.087 0.913 23 H 0.087 0.913 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.128 0.872 30 H 0.238 0.762 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.195 -7.545 -5.205 12.295 hybrid contribution 0.100 0.254 0.690 0.742 sum -8.095 -7.291 -4.515 11.793 Atomic orbital electron populations 1.20285 0.88073 1.02774 1.02169 1.20119 0.97681 0.86762 1.02583 1.66178 1.04904 1.30986 1.17616 1.29013 0.94616 0.98420 0.98976 1.19451 0.93331 0.90888 0.88119 1.43794 1.32827 1.41390 1.08878 1.19202 1.10040 1.03865 1.06677 0.90084 1.24851 0.98791 0.95085 1.00243 1.69906 1.48252 1.08505 1.27140 0.86267 0.79438 0.79700 0.80868 1.20650 1.21535 1.20763 1.20172 0.91843 0.81798 1.00184 1.25074 0.80353 0.86810 0.75803 1.90509 1.26944 1.86531 1.35980 1.84616 1.61895 1.17590 1.71198 1.83951 1.06202 1.04890 1.68277 1.25546 0.96062 1.00389 1.15811 1.20114 1.00651 0.89741 1.02012 0.91271 0.91283 0.90931 0.90872 0.90443 0.93007 0.92169 0.87219 0.76236 0.91375 0.91651 0.90901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.06 36.01 0.36 -0.54 16 2 C 0.06 1.00 6.74 -84.22 -0.57 0.43 16 3 N -0.48 -9.20 10.53 -8.06 -0.08 -9.29 16 4 C 0.07 1.38 6.97 -13.46 -0.09 1.29 16 5 C 0.21 4.49 6.21 -5.19 -0.03 4.46 16 6 N -0.55 -13.37 2.01 -175.99 -0.35 -13.72 16 7 C -0.27 -7.05 9.64 -15.06 -0.15 -7.20 16 8 H 0.08 2.06 7.93 -52.49 -0.42 1.64 16 9 C 0.01 0.26 4.81 -17.43 -0.08 0.18 16 10 N -0.89 -25.06 9.38 55.49 0.52 -24.54 16 11 Si 0.91 21.22 29.62 -169.99 -5.03 16.18 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 C 0.19 4.50 5.49 -5.20 -0.03 4.47 16 16 C 0.48 11.61 6.54 36.00 0.24 11.84 16 17 O -0.51 -13.97 16.81 -18.75 -0.32 -14.29 16 18 O -0.54 -11.14 13.42 -39.24 -0.53 -11.67 16 19 S 0.11 1.87 23.18 -107.50 -2.49 -0.62 16 20 C -0.26 -3.89 6.59 -35.92 -0.24 -4.13 16 21 C -0.07 -0.72 10.10 36.00 0.36 -0.36 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 23 H 0.07 0.69 6.72 -51.93 -0.35 0.34 16 24 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.07 1.52 8.07 -51.93 -0.42 1.10 16 26 H 0.08 1.57 8.04 -51.93 -0.42 1.16 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.06 1.32 8.12 -51.93 -0.42 0.90 16 29 H 0.11 2.80 6.46 -51.93 -0.34 2.47 16 30 H 0.38 6.20 9.10 45.56 0.41 6.62 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.69 6.76 -51.93 -0.35 0.33 16 LS Contribution 301.49 15.07 4.54 4.54 Total: -1.00 -31.88 301.49 -7.09 -38.97 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -3.12 Total: 3.99 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: -0.23 Total: 10.43 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.08 Total: -47.55 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.84 Total: -25.95 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.18 kcal Atomic # 16 Polarization: 1.87 SS G_CDS: -2.49 Total: -0.62 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.88 -7.09 -38.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833000376.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.146 kcal (2) G-P(sol) polarization free energy of solvation -31.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds