Wall clock time and date at job start Mon Mar 30 2020 01:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31787 * 122.75058 * 2 1 4 4 C 1.29026 * 117.12327 * 180.02562 * 3 2 1 5 5 C 1.50700 * 124.91269 * 179.97438 * 4 3 2 6 6 N 1.46505 * 109.47375 * 90.00452 * 5 4 3 7 7 C 1.36932 * 119.99783 * 89.99513 * 6 5 4 8 8 H 1.07999 * 120.00454 * 343.12599 * 7 6 5 9 9 C 1.38816 * 119.99565 * 162.84416 * 7 6 5 10 10 N 1.31613 * 120.00378 * 336.49835 * 9 7 6 11 11 Si 1.86805 * 119.99539 * 156.49365 * 9 7 6 12 12 H 1.48497 * 109.47095 * 60.00468 * 11 9 7 13 13 H 1.48504 * 109.46901 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47206 * 300.00069 * 11 9 7 15 15 C 1.46499 * 119.99760 * 270.00201 * 6 5 4 16 16 C 1.50698 * 109.47224 * 276.08728 * 15 6 5 17 17 O 1.20828 * 119.99738 * 0.02562 * 16 15 6 18 18 O 1.34224 * 120.00469 * 179.97438 * 16 15 6 19 19 S 1.70971 * 110.16899 * 0.23396 * 4 3 2 20 20 C 1.33643 * 122.75297 * 180.02562 * 2 1 3 21 21 C 1.50694 * 126.03495 * 359.97438 * 20 2 1 22 22 H 1.08995 * 109.46563 * 89.97506 * 1 2 3 23 23 H 1.09003 * 109.46964 * 209.97484 * 1 2 3 24 24 H 1.09000 * 109.46766 * 329.97378 * 1 2 3 25 25 H 1.08997 * 109.47356 * 330.00166 * 5 4 3 26 26 H 1.09000 * 109.47046 * 210.00649 * 5 4 3 27 27 H 0.97003 * 120.00091 * 179.97438 * 10 9 7 28 28 H 1.08994 * 109.47210 * 36.09048 * 15 6 5 29 29 H 1.08998 * 109.46843 * 156.08929 * 15 6 5 30 30 H 0.96700 * 117.00537 * 180.02562 * 18 16 15 31 31 H 1.09006 * 109.47487 * 89.99670 * 21 20 2 32 32 H 1.09006 * 109.47400 * 209.99503 * 21 20 2 33 33 H 1.09005 * 109.47258 * 329.99926 * 21 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5040 0.9819 -0.0005 5 6 4.4835 2.1271 -0.0012 6 7 4.8016 2.4985 1.3799 7 6 5.8514 1.9011 2.0249 8 1 6.2709 0.9837 1.6392 9 6 6.3804 2.4780 3.1714 10 7 6.2276 3.7668 3.3904 11 14 7.3089 1.4249 4.4036 12 1 8.4835 0.8051 3.7392 13 1 7.7687 2.2731 5.5326 14 1 6.4123 0.3592 4.9190 15 6 3.9964 3.5088 2.0707 16 6 4.5002 4.8833 1.7130 17 8 5.4356 5.0063 0.9581 18 8 3.9093 5.9709 2.2322 19 16 3.9333 -0.6731 -0.0076 20 6 2.2300 -1.1240 -0.0005 21 6 1.6848 -2.5288 -0.0006 22 1 -0.3632 0.0004 -1.0276 23 1 -0.3633 -0.8902 0.5135 24 1 -0.3633 0.8898 0.5142 25 1 4.0431 2.9816 -0.5149 26 1 5.3957 1.8247 -0.5154 27 1 6.5969 4.1697 4.1917 28 1 2.9543 3.4132 1.7662 29 1 4.0752 3.3618 3.1478 30 1 4.2674 6.8310 1.9732 31 1 1.5528 -2.8674 -1.0283 32 1 2.3832 -3.1897 0.5128 33 1 0.7238 -2.5456 0.5136 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833000376.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:52 Heat of formation + Delta-G solvation = -49.685678 kcal Electronic energy + Delta-G solvation = -18729.925445 eV Core-core repulsion = 15689.416525 eV Total energy + Delta-G solvation = -3040.508920 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.82805 -40.51172 -37.71222 -36.32427 -34.50492 -33.12790 -30.71794 -29.85721 -28.46258 -25.86763 -24.93852 -23.14953 -21.88674 -19.75306 -18.81520 -18.62588 -18.50777 -17.25039 -17.03101 -16.05695 -16.02636 -15.76442 -15.39501 -15.18585 -14.43524 -14.10516 -13.81957 -13.71176 -13.50194 -13.37638 -13.25117 -12.90195 -12.76951 -12.61241 -12.44898 -12.16261 -12.06741 -11.89769 -11.81827 -11.23812 -10.66816 -10.46033 -10.00532 -9.41766 -9.11353 -8.02137 -5.37611 -0.12061 0.58041 1.00041 1.46960 1.49999 1.56489 1.91238 1.95806 2.46337 2.71055 3.14951 3.39202 3.53186 4.12319 4.26021 4.29142 4.44156 4.57492 4.66052 4.74326 4.75708 4.86690 4.99321 5.04798 5.10126 5.13309 5.15200 5.56370 5.58034 6.08240 6.12373 6.91225 6.98831 7.52737 7.69840 8.06509 9.07154 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018038 B = 0.007125 C = 0.005663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.941016 B = 3928.837937 C = 4942.923711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.033 3.967 3 N -0.497 5.497 4 C 0.039 3.961 5 C 0.220 3.780 6 N -0.565 5.565 7 C -0.271 4.271 8 H 0.083 0.917 9 C -0.041 4.041 10 N -0.923 5.923 11 Si 0.969 3.031 12 H -0.277 1.277 13 H -0.296 1.296 14 H -0.276 1.276 15 C 0.194 3.806 16 C 0.484 3.516 17 O -0.550 6.550 18 O -0.533 6.533 19 S 0.116 5.884 20 C -0.238 4.238 21 C -0.068 4.068 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.064 0.936 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.252 0.748 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.404 0.596 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.585 -9.361 -5.383 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.098 4.098 3 N -0.213 5.213 4 C -0.242 4.242 5 C 0.090 3.910 6 N -0.284 5.284 7 C -0.400 4.400 8 H 0.101 0.899 9 C -0.237 4.237 10 N -0.568 5.568 11 Si 0.796 3.204 12 H -0.202 1.202 13 H -0.222 1.222 14 H -0.202 1.202 15 C 0.065 3.935 16 C 0.326 3.674 17 O -0.439 6.439 18 O -0.345 6.345 19 S 0.372 5.628 20 C -0.359 4.359 21 C -0.127 4.127 22 H 0.103 0.897 23 H 0.114 0.886 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.109 0.891 30 H 0.262 0.738 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.637 -9.607 -5.355 14.624 hybrid contribution 0.430 0.844 0.639 1.143 sum -9.207 -8.763 -4.716 13.558 Atomic orbital electron populations 1.20397 0.85210 1.03750 1.03507 1.20741 0.99540 0.86272 1.03296 1.66162 1.04997 1.32954 1.17171 1.28248 0.94591 0.99267 1.02076 1.19332 0.93696 0.91465 0.86532 1.43917 1.32680 1.41828 1.10000 1.19470 1.10014 1.03727 1.06739 0.89881 1.25558 1.00316 0.95981 1.01823 1.70037 1.49880 1.09735 1.27167 0.85322 0.78404 0.78103 0.78537 1.20221 1.22188 1.20182 1.20074 0.92566 0.81848 0.99026 1.25108 0.79658 0.87672 0.75000 1.90486 1.28510 1.87205 1.37652 1.84537 1.61289 1.18224 1.70407 1.83812 1.08068 1.03008 1.67950 1.26142 0.94481 1.02301 1.13001 1.20337 1.01638 0.86875 1.03845 0.89683 0.88608 0.91670 0.91606 0.90644 0.93815 0.90709 0.89149 0.73801 0.89210 0.90858 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.49 10.06 71.24 0.72 -0.78 16 2 C 0.03 1.01 6.74 41.52 0.28 1.29 16 3 N -0.50 -18.64 10.53 -179.40 -1.89 -20.53 16 4 C 0.04 1.49 6.97 88.52 0.62 2.10 16 5 C 0.22 9.43 6.21 85.63 0.53 9.96 16 6 N -0.56 -27.87 2.01 -710.70 -1.43 -29.30 16 7 C -0.27 -14.30 9.64 84.04 0.81 -13.49 16 8 H 0.08 4.24 7.93 -2.91 -0.02 4.22 16 9 C -0.04 -2.20 4.81 84.86 0.41 -1.79 16 10 N -0.92 -52.58 9.38 21.65 0.20 -52.38 16 11 Si 0.97 43.92 29.62 68.60 2.03 45.96 16 12 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.30 -13.58 7.11 99.48 0.71 -12.87 16 14 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 15 C 0.19 9.38 5.49 85.63 0.47 9.85 16 16 C 0.48 23.70 6.54 71.24 0.47 24.16 16 17 O -0.55 -30.42 16.81 21.96 0.37 -30.05 16 18 O -0.53 -21.66 13.42 -51.35 -0.69 -22.35 16 19 S 0.12 3.79 23.18 -56.49 -1.31 2.48 16 20 C -0.24 -6.56 6.59 24.64 0.16 -6.40 16 21 C -0.07 -1.19 10.10 71.23 0.72 -0.48 16 22 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 23 H 0.10 1.51 6.72 -2.39 -0.02 1.50 16 24 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 2.83 8.07 -2.39 -0.02 2.81 16 26 H 0.08 3.16 8.04 -2.39 -0.02 3.14 16 27 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 28 H 0.08 3.32 8.12 -2.39 -0.02 3.30 16 29 H 0.09 4.72 6.46 -2.39 -0.02 4.71 16 30 H 0.40 12.74 9.10 -74.06 -0.67 12.06 16 31 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.10 1.31 6.76 -2.38 -0.02 1.30 16 Total: -1.00 -68.60 301.49 2.93 -65.67 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.47 Total: 16.08 kcal Atomic # 6 Polarization: 19.25 SS G_CDS: 5.18 Total: 24.43 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -3.12 Total: -102.21 kcal Atomic # 8 Polarization: -52.08 SS G_CDS: -0.32 Total: -52.40 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.31 Total: 2.48 kcal Total: -68.60 2.93 -65.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833000376.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.983 kcal (2) G-P(sol) polarization free energy of solvation -68.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds