Wall clock time and date at job start Mon Mar 30 2020 01:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31783 * 122.75113 * 2 1 4 4 C 1.29024 * 117.12182 * 180.02562 * 3 2 1 5 5 S 1.70982 * 110.17055 * 359.72458 * 4 3 2 6 6 C 1.33638 * 122.74667 * 180.02562 * 2 1 3 7 7 C 1.50702 * 126.03828 * 0.02562 * 6 2 1 8 8 C 1.52997 * 109.47270 * 90.00188 * 7 6 2 9 9 N 1.46493 * 109.47360 * 179.97438 * 8 7 6 10 10 C 1.36941 * 120.00225 * 269.72336 * 9 8 7 11 11 H 1.08005 * 119.99419 * 335.03547 * 10 9 8 12 12 C 1.38810 * 120.00257 * 155.03877 * 10 9 8 13 13 N 1.31613 * 120.00082 * 0.81197 * 12 10 9 14 14 Si 1.86803 * 119.99976 * 180.81697 * 12 10 9 15 15 H 1.48497 * 109.46972 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47292 * 119.99651 * 14 12 10 17 17 H 1.48496 * 109.46947 * 239.99784 * 14 12 10 18 18 C 1.46500 * 120.00362 * 90.00016 * 9 8 7 19 19 C 1.50707 * 109.47023 * 273.88035 * 18 9 8 20 20 O 1.20826 * 119.99744 * 359.97438 * 19 18 9 21 21 O 1.34228 * 120.00075 * 179.97438 * 19 18 9 22 22 H 1.08994 * 109.46986 * 270.00163 * 1 2 3 23 23 H 1.09003 * 109.47085 * 29.99982 * 1 2 3 24 24 H 1.08995 * 109.47145 * 149.99599 * 1 2 3 25 25 H 1.08004 * 124.91625 * 180.02562 * 4 3 2 26 26 H 1.08994 * 109.46976 * 329.99695 * 7 6 2 27 27 H 1.08998 * 109.46892 * 209.99863 * 7 6 2 28 28 H 1.09003 * 109.47316 * 59.99828 * 8 7 6 29 29 H 1.09010 * 109.47138 * 300.00003 * 8 7 6 30 30 H 0.97001 * 120.00589 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47213 * 33.87274 * 18 9 8 32 32 H 1.08994 * 109.47681 * 153.87753 * 18 9 8 33 33 H 0.96702 * 116.99568 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9818 -0.0005 5 16 3.9333 -0.6733 0.0066 6 6 2.2299 -1.1240 -0.0005 7 6 1.6846 -2.5289 -0.0017 8 6 1.5006 -3.0034 -1.4445 9 7 0.9711 -4.3692 -1.4457 10 6 1.8293 -5.4364 -1.4520 11 1 2.8268 -5.3247 -1.8507 12 6 1.4171 -6.6615 -0.9460 13 7 0.1963 -6.8018 -0.4748 14 14 2.5954 -8.1110 -0.9337 15 1 3.8972 -7.6956 -1.5150 16 1 2.8007 -8.5702 0.4635 17 1 2.0248 -9.2195 -1.7403 18 6 -0.4766 -4.5937 -1.4463 19 6 -0.9882 -4.5767 -0.0288 20 8 -0.2219 -4.3961 0.8878 21 8 -2.2950 -4.7621 0.2155 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5139 25 1 4.2061 1.8025 -0.0002 26 1 0.7233 -2.5459 0.5118 27 1 2.3826 -3.1900 0.5119 28 1 2.4620 -2.9864 -1.9580 29 1 0.8026 -2.3422 -1.9583 30 1 -0.0917 -7.6578 -0.1209 31 1 -0.9663 -3.8057 -2.0186 32 1 -0.6943 -5.5607 -1.8995 33 1 -2.5756 -4.7432 1.1407 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833010566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:43 Heat of formation + Delta-G solvation = -27.756614 kcal Electronic energy + Delta-G solvation = -19000.085023 eV Core-core repulsion = 15960.527018 eV Total energy + Delta-G solvation = -3039.558004 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.61253 -38.72349 -36.11125 -34.40702 -33.27190 -31.28968 -29.69665 -27.43709 -26.24697 -24.58632 -23.28020 -21.38536 -19.93137 -18.48007 -17.76840 -16.98830 -16.63627 -15.58300 -15.19960 -14.95507 -14.57470 -14.14315 -13.79009 -13.44517 -13.28370 -12.62790 -12.51133 -12.32726 -12.02926 -11.81922 -11.54501 -11.23372 -11.01332 -10.97383 -10.68696 -10.35266 -10.22760 -10.02845 -9.74861 -9.39278 -9.21546 -8.91477 -8.68201 -8.39329 -7.04764 -6.01060 -3.43740 1.01197 1.66205 2.05791 3.04169 3.29987 3.37274 3.39019 3.89792 4.29563 4.46236 4.53703 5.13533 5.29771 5.32359 5.46171 5.70257 5.83045 5.87732 6.04165 6.11587 6.18717 6.37478 6.39092 6.50891 6.79517 6.90294 7.05426 7.16529 7.60875 7.87444 7.96451 8.17230 8.96600 9.43367 9.62212 10.05517 11.09023 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.006593 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.812589 B = 4246.199529 C = 5255.163621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.031 3.969 3 N -0.465 5.465 4 C -0.006 4.006 5 S 0.101 5.899 6 C -0.177 4.177 7 C -0.067 4.067 8 C 0.156 3.844 9 N -0.568 5.568 10 C -0.254 4.254 11 H 0.079 0.921 12 C 0.008 3.992 13 N -0.912 5.912 14 Si 0.916 3.084 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.288 1.288 18 C 0.191 3.809 19 C 0.481 3.519 20 O -0.521 6.521 21 O -0.543 6.543 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.192 0.808 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.259 0.741 31 H 0.045 0.955 32 H 0.121 0.879 33 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.134 10.017 -0.572 10.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 N -0.179 5.179 4 C -0.304 4.304 5 S 0.353 5.647 6 C -0.299 4.299 7 C -0.110 4.110 8 C 0.028 3.972 9 N -0.287 5.287 10 C -0.383 4.383 11 H 0.097 0.903 12 C -0.189 4.189 13 N -0.557 5.557 14 Si 0.746 3.254 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.215 1.215 18 C 0.062 3.938 19 C 0.322 3.678 20 O -0.408 6.408 21 O -0.353 6.353 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.094 0.906 25 H 0.209 0.791 26 H 0.112 0.888 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.139 0.861 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 2.196 9.934 -0.704 10.199 hybrid contribution -0.273 -0.805 1.128 1.412 sum 1.923 9.129 0.423 9.339 Atomic orbital electron populations 1.20277 0.87351 1.02957 1.02539 1.20152 0.98097 0.86203 1.05451 1.66109 1.05095 1.31957 1.14722 1.28040 0.95219 0.99989 1.07184 1.84058 1.08838 1.03216 1.68553 1.26302 0.93924 1.02040 1.07671 1.21132 1.02135 0.85867 1.01834 1.21011 0.97851 0.85907 0.92436 1.43947 1.00659 1.00973 1.83137 1.19358 0.96639 0.88333 1.33951 0.90323 1.25061 0.96907 0.99191 0.97784 1.69568 1.16746 1.24575 1.44838 0.85995 0.80198 0.81806 0.77384 1.20166 1.21548 1.21510 1.20261 0.83368 1.02390 0.87741 1.25146 0.77693 0.69660 0.95286 1.90469 1.56490 1.46730 1.47075 1.84633 1.30490 1.86223 1.33993 0.91245 0.91168 0.90602 0.79125 0.88781 0.90407 0.93003 0.93932 0.93022 0.93718 0.86089 0.76549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 9.82 36.01 0.35 -0.68 16 2 C 0.03 0.52 6.74 -84.22 -0.57 -0.05 16 3 N -0.46 -7.43 10.53 -11.89 -0.13 -7.56 16 4 C -0.01 -0.09 12.23 51.58 0.63 0.55 16 5 S 0.10 1.44 23.22 -107.50 -2.50 -1.05 16 6 C -0.18 -3.03 5.84 -35.92 -0.21 -3.24 16 7 C -0.07 -1.31 4.64 -27.88 -0.13 -1.44 16 8 C 0.16 3.09 5.69 -4.05 -0.02 3.06 16 9 N -0.57 -13.24 2.14 -174.61 -0.37 -13.62 16 10 C -0.25 -6.52 9.67 -15.06 -0.15 -6.67 16 11 H 0.08 1.98 7.82 -52.48 -0.41 1.57 16 12 C 0.01 0.22 5.31 -17.43 -0.09 0.12 16 13 N -0.91 -24.74 8.44 55.49 0.47 -24.27 16 14 Si 0.92 21.18 29.55 -169.99 -5.02 16.15 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 C 0.19 4.28 5.54 -5.19 -0.03 4.25 16 19 C 0.48 11.00 6.24 36.01 0.22 11.22 16 20 O -0.52 -13.26 13.93 -18.75 -0.26 -13.52 16 21 O -0.54 -10.65 13.42 -39.25 -0.53 -11.18 16 22 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.08 1.10 7.18 -51.93 -0.37 0.73 16 25 H 0.19 1.82 8.06 -52.48 -0.42 1.40 16 26 H 0.09 1.98 5.24 -51.93 -0.27 1.71 16 27 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 28 H 0.05 1.01 8.03 -51.93 -0.42 0.60 16 29 H 0.04 0.77 7.77 -51.92 -0.40 0.36 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.04 0.86 7.95 -51.93 -0.41 0.45 16 32 H 0.12 2.96 6.42 -51.93 -0.33 2.62 16 33 H 0.38 5.94 9.10 45.56 0.41 6.35 16 LS Contribution 294.59 15.07 4.44 4.44 Total: -1.00 -30.40 294.59 -6.92 -37.32 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -3.03 Total: 6.16 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: 0.01 Total: 7.13 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.03 Total: -45.45 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.79 Total: -24.70 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.50 Total: -1.05 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.40 -6.92 -37.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833010566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.565 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds