Wall clock time and date at job start Mon Mar 30 2020 01:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31783 * 122.75113 * 2 1 4 4 C 1.29024 * 117.12182 * 180.02562 * 3 2 1 5 5 S 1.70982 * 110.17055 * 359.72458 * 4 3 2 6 6 C 1.33638 * 122.74667 * 180.02562 * 2 1 3 7 7 C 1.50702 * 126.03828 * 0.02562 * 6 2 1 8 8 C 1.52997 * 109.47270 * 90.00188 * 7 6 2 9 9 N 1.46493 * 109.47360 * 179.97438 * 8 7 6 10 10 C 1.36941 * 120.00225 * 269.72336 * 9 8 7 11 11 H 1.08005 * 119.99419 * 335.03547 * 10 9 8 12 12 C 1.38810 * 120.00257 * 155.03877 * 10 9 8 13 13 N 1.31613 * 120.00082 * 0.81197 * 12 10 9 14 14 Si 1.86803 * 119.99976 * 180.81697 * 12 10 9 15 15 H 1.48497 * 109.46972 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47292 * 119.99651 * 14 12 10 17 17 H 1.48496 * 109.46947 * 239.99784 * 14 12 10 18 18 C 1.46500 * 120.00362 * 90.00016 * 9 8 7 19 19 C 1.50707 * 109.47023 * 273.88035 * 18 9 8 20 20 O 1.20826 * 119.99744 * 359.97438 * 19 18 9 21 21 O 1.34228 * 120.00075 * 179.97438 * 19 18 9 22 22 H 1.08994 * 109.46986 * 270.00163 * 1 2 3 23 23 H 1.09003 * 109.47085 * 29.99982 * 1 2 3 24 24 H 1.08995 * 109.47145 * 149.99599 * 1 2 3 25 25 H 1.08004 * 124.91625 * 180.02562 * 4 3 2 26 26 H 1.08994 * 109.46976 * 329.99695 * 7 6 2 27 27 H 1.08998 * 109.46892 * 209.99863 * 7 6 2 28 28 H 1.09003 * 109.47316 * 59.99828 * 8 7 6 29 29 H 1.09010 * 109.47138 * 300.00003 * 8 7 6 30 30 H 0.97001 * 120.00589 * 180.02562 * 13 12 10 31 31 H 1.09002 * 109.47213 * 33.87274 * 18 9 8 32 32 H 1.08994 * 109.47681 * 153.87753 * 18 9 8 33 33 H 0.96702 * 116.99568 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2200 1.1083 0.0000 4 6 3.5040 0.9818 -0.0005 5 16 3.9333 -0.6733 0.0066 6 6 2.2299 -1.1240 -0.0005 7 6 1.6846 -2.5289 -0.0017 8 6 1.5006 -3.0034 -1.4445 9 7 0.9711 -4.3692 -1.4457 10 6 1.8293 -5.4364 -1.4520 11 1 2.8268 -5.3247 -1.8507 12 6 1.4171 -6.6615 -0.9460 13 7 0.1963 -6.8018 -0.4748 14 14 2.5954 -8.1110 -0.9337 15 1 3.8972 -7.6956 -1.5150 16 1 2.8007 -8.5702 0.4635 17 1 2.0248 -9.2195 -1.7403 18 6 -0.4766 -4.5937 -1.4463 19 6 -0.9882 -4.5767 -0.0288 20 8 -0.2219 -4.3961 0.8878 21 8 -2.2950 -4.7621 0.2155 22 1 -0.3633 0.0000 1.0276 23 1 -0.3633 0.8900 -0.5138 24 1 -0.3633 -0.8899 -0.5139 25 1 4.2061 1.8025 -0.0002 26 1 0.7233 -2.5459 0.5118 27 1 2.3826 -3.1900 0.5119 28 1 2.4620 -2.9864 -1.9580 29 1 0.8026 -2.3422 -1.9583 30 1 -0.0917 -7.6578 -0.1209 31 1 -0.9663 -3.8057 -2.0186 32 1 -0.6943 -5.5607 -1.8995 33 1 -2.5756 -4.7432 1.1407 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833010566.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:42 Heat of formation + Delta-G solvation = -47.244863 kcal Electronic energy + Delta-G solvation = -19000.930097 eV Core-core repulsion = 15960.527018 eV Total energy + Delta-G solvation = -3040.403078 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.85431 -40.45402 -37.81185 -36.16289 -34.82289 -32.96900 -31.12236 -29.13530 -27.77282 -25.89815 -24.84417 -23.02142 -21.68881 -19.71708 -18.98617 -18.82617 -18.38093 -17.26630 -16.91368 -16.35708 -15.90661 -15.87432 -15.43972 -15.16437 -14.48910 -14.13286 -14.04368 -13.51267 -13.43642 -13.24148 -13.20508 -12.97962 -12.78690 -12.52514 -12.25323 -12.13507 -12.03972 -11.79866 -11.38872 -11.02984 -10.61200 -10.57216 -10.16172 -9.63393 -8.88106 -7.97508 -5.40523 -0.16827 0.49084 0.88830 1.45250 1.48494 1.56681 1.84316 2.11503 2.46367 2.85565 3.31108 3.37671 3.53853 4.10927 4.21422 4.37207 4.44027 4.59667 4.71284 4.74635 4.75543 4.87642 4.95679 5.19947 5.24658 5.28142 5.38219 5.52501 5.60182 6.24228 6.27604 6.78725 7.04711 7.64104 7.83493 8.15527 9.10202 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.020800 B = 0.006593 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.812589 B = 4246.199529 C = 5255.163621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.036 3.964 3 N -0.490 5.490 4 C 0.019 3.981 5 S 0.121 5.879 6 C -0.217 4.217 7 C -0.043 4.043 8 C 0.158 3.842 9 N -0.583 5.583 10 C -0.258 4.258 11 H 0.079 0.921 12 C -0.041 4.041 13 N -0.931 5.931 14 Si 0.971 3.029 15 H -0.266 1.266 16 H -0.302 1.302 17 H -0.287 1.287 18 C 0.190 3.810 19 C 0.485 3.515 20 O -0.552 6.552 21 O -0.536 6.536 22 H 0.073 0.927 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.235 0.765 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.250 0.750 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.823 11.740 -1.011 11.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.095 4.095 3 N -0.205 5.205 4 C -0.279 4.279 5 S 0.375 5.625 6 C -0.338 4.338 7 C -0.086 4.086 8 C 0.031 3.969 9 N -0.303 5.303 10 C -0.387 4.387 11 H 0.096 0.904 12 C -0.236 4.236 13 N -0.579 5.579 14 Si 0.800 3.200 15 H -0.190 1.190 16 H -0.230 1.230 17 H -0.213 1.213 18 C 0.061 3.939 19 C 0.327 3.673 20 O -0.441 6.441 21 O -0.347 6.347 22 H 0.091 0.909 23 H 0.103 0.897 24 H 0.089 0.911 25 H 0.251 0.749 26 H 0.094 0.906 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.117 0.883 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 2.876 11.672 -1.156 12.076 hybrid contribution -0.463 -1.182 1.279 1.802 sum 2.413 10.490 0.123 10.765 Atomic orbital electron populations 1.20322 0.86494 1.03415 1.02937 1.20436 0.99004 0.86179 1.03839 1.66211 1.06074 1.31550 1.16621 1.28834 0.95116 1.00595 1.03379 1.83987 1.06682 1.03772 1.68081 1.26002 0.95930 1.00888 1.11012 1.20601 1.00372 0.86927 1.00669 1.21054 0.98229 0.84615 0.92982 1.44072 1.00908 1.01731 1.83540 1.19591 0.96864 0.89209 1.33074 0.90351 1.25687 0.98176 1.01338 0.98385 1.69728 1.17799 1.24283 1.46045 0.85140 0.79141 0.79379 0.76353 1.19040 1.23006 1.21336 1.20257 0.83399 1.02392 0.87869 1.25174 0.78156 0.68823 0.95175 1.90461 1.57495 1.48206 1.47975 1.84557 1.28861 1.85564 1.35728 0.90858 0.89678 0.91088 0.74923 0.90632 0.93896 0.92935 0.91916 0.93998 0.90336 0.88304 0.74356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.98 9.82 71.24 0.70 -1.28 16 2 C 0.04 1.13 6.74 41.52 0.28 1.41 16 3 N -0.49 -14.36 10.53 -191.54 -2.02 -16.37 16 4 C 0.02 0.43 12.23 130.66 1.60 2.03 16 5 S 0.12 3.24 23.22 -56.49 -1.31 1.93 16 6 C -0.22 -7.19 5.84 24.64 0.14 -7.05 16 7 C -0.04 -1.71 4.64 29.85 0.14 -1.57 16 8 C 0.16 6.20 5.69 86.38 0.49 6.69 16 9 N -0.58 -27.22 2.14 -706.33 -1.51 -28.73 16 10 C -0.26 -13.33 9.67 84.03 0.81 -12.52 16 11 H 0.08 3.95 7.82 -2.91 -0.02 3.93 16 12 C -0.04 -2.19 5.31 84.86 0.45 -1.74 16 13 N -0.93 -51.36 8.44 21.65 0.18 -51.18 16 14 Si 0.97 44.03 29.55 68.60 2.03 46.05 16 15 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 16 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 17 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 18 C 0.19 8.44 5.54 85.64 0.47 8.92 16 19 C 0.48 22.13 6.24 71.24 0.44 22.58 16 20 O -0.55 -28.49 13.93 21.96 0.31 -28.18 16 21 O -0.54 -20.58 13.42 -51.40 -0.69 -21.27 16 22 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.07 1.99 7.18 -2.39 -0.02 1.97 16 25 H 0.23 3.27 8.06 -2.91 -0.02 3.25 16 26 H 0.08 3.23 5.24 -2.39 -0.01 3.22 16 27 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.05 2.03 8.03 -2.39 -0.02 2.01 16 29 H 0.06 2.19 7.77 -2.38 -0.02 2.17 16 30 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 31 H 0.08 2.90 7.95 -2.39 -0.02 2.89 16 32 H 0.10 4.88 6.42 -2.39 -0.02 4.86 16 33 H 0.40 12.06 9.10 -74.06 -0.67 11.39 16 Total: -1.00 -65.15 294.59 2.99 -62.16 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.47 Total: 18.12 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: 5.53 Total: 17.47 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -3.34 Total: -96.28 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -0.38 Total: -49.45 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 3.24 SS G_CDS: -1.31 Total: 1.93 kcal Total: -65.15 2.99 -62.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833010566.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.918 kcal (2) G-P(sol) polarization free energy of solvation -65.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds