Wall clock time and date at job start Mon Mar 30 2020 01:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.41592 * 114.00122 * 2 1 4 4 C 1.34779 * 120.00479 * 270.00182 * 3 2 1 5 5 O 1.21680 * 120.00386 * 179.97438 * 4 3 2 6 6 C 1.46384 * 119.99504 * 359.97438 * 4 3 2 7 7 H 1.08002 * 120.00114 * 359.97438 * 6 4 3 8 8 C 1.40047 * 119.99914 * 180.02562 * 6 4 3 9 9 N 1.30672 * 119.99678 * 359.97438 * 8 6 4 10 10 Si 1.86793 * 120.00073 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.47148 * 59.99977 * 10 8 6 12 12 H 1.48499 * 109.47037 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46967 * 300.00002 * 10 8 6 14 14 C 1.46501 * 120.00093 * 89.99771 * 3 2 1 15 15 H 1.09007 * 109.47106 * 0.02562 * 14 3 2 16 16 C 1.52992 * 109.47444 * 240.00192 * 14 3 2 17 17 C 1.50701 * 109.47113 * 120.00282 * 14 3 2 18 18 C 1.33647 * 122.74952 * 205.00726 * 17 14 3 19 19 S 1.76195 * 107.92489 * 180.26157 * 18 17 14 20 20 C 1.70986 * 90.28166 * 359.65809 * 19 18 17 21 21 C 1.50698 * 124.91681 * 180.02562 * 20 19 18 22 22 N 1.29024 * 110.16412 * 0.34175 * 20 19 18 23 23 H 1.08997 * 109.47362 * 299.99631 * 1 2 3 24 24 H 1.09000 * 109.47343 * 60.00453 * 1 2 3 25 25 H 1.09001 * 109.47168 * 180.02562 * 1 2 3 26 26 H 0.97009 * 119.99881 * 180.02562 * 9 8 6 27 27 H 1.09000 * 109.47530 * 299.99722 * 16 14 3 28 28 H 1.09007 * 109.46969 * 60.00270 * 16 14 3 29 29 H 1.09004 * 109.47449 * 180.02562 * 16 14 3 30 30 H 1.08002 * 126.03488 * 359.97438 * 18 17 14 31 31 H 1.09002 * 109.46870 * 270.31045 * 21 20 19 32 32 H 1.09002 * 109.46923 * 30.31111 * 21 20 19 33 33 H 1.09000 * 109.47331 * 150.31009 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0049 1.2935 0.0000 4 6 2.2790 1.9092 -1.1672 5 8 2.7735 3.0210 -1.1671 6 6 1.9818 1.2404 -2.4349 7 1 1.5432 0.2534 -2.4349 8 6 2.2671 1.8799 -3.6477 9 7 2.7981 3.0738 -3.6476 10 14 1.8871 1.0267 -5.2654 11 1 0.4321 0.7405 -5.3443 12 1 2.2796 1.9083 -6.3941 13 1 2.6470 -0.2467 -5.3438 14 6 2.3028 1.9627 1.2687 15 1 2.0151 1.3154 2.0973 16 6 1.5194 3.2743 1.3498 17 6 3.7793 2.2538 1.3486 18 6 4.4266 2.3952 2.5092 19 16 6.1184 2.7309 2.1492 20 6 5.7891 2.6378 0.4740 21 6 6.8108 2.8260 -0.6177 22 7 4.5380 2.3895 0.2797 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.9954 3.5170 -4.4877 27 1 1.8075 3.9215 0.5214 28 1 0.4514 3.0638 1.2921 29 1 1.7414 3.7725 2.2936 30 1 3.9889 2.3217 3.4939 31 1 6.8582 3.8796 -0.8932 32 1 7.7877 2.4993 -0.2612 33 1 6.5255 2.2353 -1.4882 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000836801510.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:05 Heat of formation + Delta-G solvation = 9.518941 kcal Electronic energy + Delta-G solvation = -19439.865696 eV Core-core repulsion = 16401.924081 eV Total energy + Delta-G solvation = -3037.941615 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.05973 -39.25972 -37.40660 -35.36081 -34.31845 -32.41615 -30.77520 -28.92624 -28.24594 -26.86873 -25.37616 -23.46029 -21.39662 -20.33529 -19.49828 -18.56019 -17.57865 -16.74255 -16.42112 -16.21804 -15.76108 -15.71587 -14.86228 -14.75985 -14.58159 -14.35816 -14.06966 -13.73766 -13.40870 -13.13117 -13.12932 -12.92990 -12.86499 -12.69141 -12.47751 -12.32302 -12.07811 -11.93805 -11.12786 -10.84151 -10.17841 -10.13046 -9.49554 -9.45412 -9.18979 -8.17472 -6.70302 -0.10349 0.60687 0.84379 1.37086 1.40990 1.49356 1.60980 2.10748 2.30210 2.59438 3.34184 3.72819 3.85727 4.14441 4.22498 4.38969 4.41221 4.46823 4.52032 4.64341 4.66573 4.70139 4.77975 4.83486 4.95610 5.06523 5.30751 5.39454 5.43085 5.99039 6.24542 6.35392 6.98299 7.24132 7.59679 8.60698 8.79227 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.018813 B = 0.008040 C = 0.006267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.937649 B = 3481.910056 C = 4466.923387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.171 6.171 3 N -0.500 5.500 4 C 0.567 3.433 5 O -0.550 6.550 6 C -0.565 4.565 7 H 0.068 0.932 8 C 0.037 3.963 9 N -0.813 5.813 10 Si 0.982 3.018 11 H -0.257 1.257 12 H -0.271 1.271 13 H -0.264 1.264 14 C 0.219 3.781 15 H 0.118 0.882 16 C -0.151 4.151 17 C 0.048 3.952 18 C -0.258 4.258 19 S 0.140 5.860 20 C 0.014 3.986 21 C -0.068 4.068 22 N -0.454 5.454 23 H 0.055 0.945 24 H 0.030 0.970 25 H 0.121 0.879 26 H 0.270 0.730 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.209 0.791 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 -2.455 11.218 11.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.175 6.175 3 N -0.285 5.285 4 C 0.373 3.627 5 O -0.430 6.430 6 C -0.602 4.602 7 H 0.086 0.914 8 C -0.178 4.178 9 N -0.443 5.443 10 Si 0.803 3.197 11 H -0.182 1.182 12 H -0.196 1.196 13 H -0.188 1.188 14 C 0.114 3.886 15 H 0.135 0.865 16 C -0.209 4.209 17 C -0.086 4.086 18 C -0.397 4.397 19 S 0.394 5.606 20 C -0.264 4.264 21 C -0.128 4.128 22 N -0.168 5.168 23 H 0.073 0.927 24 H 0.049 0.951 25 H 0.139 0.861 26 H 0.080 0.920 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.226 0.774 31 H 0.101 0.899 32 H 0.128 0.872 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.707 -1.702 11.158 11.880 hybrid contribution -1.513 -0.417 -1.032 1.878 sum 2.194 -2.118 10.126 10.575 Atomic orbital electron populations 1.23323 0.81973 1.04004 1.00388 1.90422 1.20526 1.09937 1.96642 1.50538 1.63062 1.09364 1.05514 1.18230 0.77512 0.84788 0.82219 1.90574 1.47376 1.20697 1.84341 1.21262 1.44662 1.03822 0.90450 0.91406 1.26696 0.92304 0.94874 1.03903 1.70155 1.32276 1.13523 1.28313 0.85302 0.79717 0.78604 0.76072 1.18152 1.19551 1.18807 1.19655 0.87535 0.94173 0.87251 0.86462 1.22144 0.99300 0.96795 1.02710 1.20738 0.98152 1.02276 0.87434 1.27066 0.96581 1.12623 1.03419 1.83090 1.08053 1.66666 1.02831 1.27659 0.95086 1.04207 0.99459 1.20398 0.94943 1.03309 0.94141 1.66365 1.03394 1.13297 1.33773 0.92680 0.95081 0.86076 0.91979 0.94052 0.91923 0.89302 0.77396 0.89871 0.87176 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 11.41 113.37 1.29 1.33 16 2 O -0.17 -7.64 10.46 -38.77 -0.41 -8.05 16 3 N -0.50 -24.64 2.88 -450.39 -1.30 -25.94 16 4 C 0.57 33.56 6.49 86.36 0.56 34.12 16 5 O -0.55 -35.17 10.62 -4.29 -0.05 -35.21 16 6 C -0.57 -33.92 9.10 24.83 0.23 -33.69 16 7 H 0.07 3.91 7.26 -2.91 -0.02 3.89 16 8 C 0.04 2.15 5.50 85.30 0.47 2.62 16 9 N -0.81 -49.96 11.83 21.84 0.26 -49.70 16 10 Si 0.98 43.21 29.56 68.60 2.03 45.24 16 11 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 12 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 13 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 14 C 0.22 8.82 3.28 44.24 0.15 8.97 16 15 H 0.12 3.82 8.12 -2.38 -0.02 3.80 16 16 C -0.15 -5.71 9.10 71.98 0.66 -5.06 16 17 C 0.05 1.96 5.56 41.52 0.23 2.19 16 18 C -0.26 -7.91 11.14 66.78 0.74 -7.16 16 19 S 0.14 3.95 23.18 -56.49 -1.31 2.64 16 20 C 0.01 0.56 7.39 88.52 0.65 1.22 16 21 C -0.07 -2.25 10.46 71.24 0.75 -1.50 16 22 N -0.45 -21.86 7.02 -179.40 -1.26 -23.12 16 23 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 26 H 0.27 15.21 8.29 -92.70 -0.77 14.44 16 27 H 0.04 1.99 6.16 -2.39 -0.01 1.98 16 28 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 30 H 0.21 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -80.23 299.32 4.81 -75.41 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 1.12 Total: 15.70 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: 5.72 Total: 3.02 kcal Atomic # 7 Polarization: -96.47 SS G_CDS: -2.30 Total: -98.76 kcal Atomic # 8 Polarization: -42.81 SS G_CDS: -0.45 Total: -43.26 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.31 Total: 2.64 kcal Total: -80.23 4.81 -75.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000836801510.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.933 kcal (2) G-P(sol) polarization free energy of solvation -80.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds