Wall clock time and date at job start Mon Mar 30 2020 01:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.32558 * 121.64534 * 94.71503 * 3 2 1 5 5 S 1.77232 * 105.32121 * 179.97438 * 4 3 2 6 6 C 1.72218 * 94.84348 * 0.29318 * 5 4 3 7 7 O 1.21830 * 127.05492 * 179.85722 * 6 5 4 8 8 N 1.34239 * 105.88431 * 359.82950 * 6 5 4 9 9 C 1.46495 * 121.38230 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.47635 * 269.98210 * 9 8 6 11 11 O 1.21288 * 119.99550 * 359.97438 * 10 9 8 12 12 N 1.34771 * 120.00311 * 179.97438 * 10 9 8 13 13 C 1.46504 * 119.99941 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47128 * 179.97438 * 13 12 10 15 15 H 1.08005 * 120.00041 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00249 * 179.97438 * 14 13 12 17 17 N 1.31515 * 120.00347 * 179.97438 * 16 14 13 18 18 Si 1.86806 * 119.99900 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.46881 * 90.00033 * 18 16 14 20 20 H 1.48496 * 109.47064 * 209.99888 * 18 16 14 21 21 H 1.48498 * 109.47161 * 330.00064 * 18 16 14 22 22 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 23 23 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 26 26 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 27 27 H 1.08001 * 127.34526 * 0.02562 * 4 3 2 28 28 H 1.09007 * 109.46866 * 29.98465 * 9 8 6 29 29 H 1.08993 * 109.47562 * 149.97501 * 9 8 6 30 30 H 0.97002 * 120.00000 * 359.97438 * 12 10 9 31 31 H 1.09003 * 109.47065 * 299.99737 * 13 12 10 32 32 H 1.08996 * 109.47188 * 60.00342 * 13 12 10 33 33 H 0.97006 * 120.00014 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3516 2.0457 1.1247 5 16 2.8806 3.6627 0.6281 6 6 2.6275 3.3886 -1.0532 7 8 2.8207 4.1759 -1.9626 8 7 2.1743 2.1292 -1.1560 9 6 1.8464 1.5402 -2.4566 10 6 0.3989 1.8082 -2.7789 11 8 -0.2911 2.4296 -1.9986 12 7 -0.1290 1.3574 -3.9341 13 6 -1.5361 1.6184 -4.2476 14 6 -1.8731 1.0135 -5.5861 15 1 -1.1151 0.4868 -6.1470 16 6 -3.1493 1.1313 -6.0942 17 7 -3.4433 0.6039 -7.2626 18 14 -4.4610 2.0403 -5.1232 19 1 -4.4468 3.4774 -5.4970 20 1 -5.7939 1.4621 -5.4302 21 1 -4.1850 1.9039 -3.6705 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 2.3010 1.6528 2.1294 28 1 2.4781 1.9841 -3.2261 29 1 2.0178 0.4644 -2.4220 30 1 0.4229 0.8607 -4.5583 31 1 -2.1681 1.1745 -3.4784 32 1 -1.7071 2.6943 -4.2822 33 1 -4.3414 0.6865 -7.6199 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842585572.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:09 Heat of formation + Delta-G solvation = -66.785823 kcal Electronic energy + Delta-G solvation = -18654.696389 eV Core-core repulsion = 15613.445952 eV Total energy + Delta-G solvation = -3041.250438 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.35237 -40.22772 -38.77290 -36.24182 -34.53791 -34.40684 -32.62721 -30.29816 -28.53937 -25.94718 -24.24198 -23.64551 -22.10488 -21.24580 -19.45055 -18.99387 -18.32852 -18.15608 -17.01883 -16.76429 -16.63474 -16.15843 -15.81896 -15.46922 -15.10070 -14.84740 -14.51066 -14.41291 -14.30438 -14.00580 -13.34274 -13.11474 -12.92520 -12.75396 -12.49510 -12.03111 -11.97319 -11.74450 -11.69279 -11.32855 -11.24671 -10.95288 -10.48384 -10.03413 -8.97398 -8.42765 -6.49672 -0.14475 0.39332 0.82055 1.06896 1.29107 1.32320 1.42956 1.51655 1.68379 2.24342 2.37609 2.92794 3.45009 3.73561 3.74573 4.00643 4.13196 4.36425 4.40731 4.55521 4.69731 4.72815 4.97096 5.01268 5.02250 5.13507 5.21298 5.36829 5.46531 5.70804 6.03229 6.19702 6.50680 6.70201 7.10243 7.26932 8.71786 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.028943 B = 0.004815 C = 0.004606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.180797 B = 5813.690412 C = 6077.528451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.061 4.061 3 C 0.096 3.904 4 C -0.220 4.220 5 S 0.006 5.994 6 C 0.462 3.538 7 O -0.524 6.524 8 N -0.514 5.514 9 C 0.083 3.917 10 C 0.488 3.512 11 O -0.579 6.579 12 N -0.697 5.697 13 C 0.235 3.765 14 C -0.546 4.546 15 H 0.064 0.936 16 C 0.030 3.970 17 N -0.929 5.929 18 Si 0.933 3.067 19 H -0.271 1.271 20 H -0.271 1.271 21 H -0.260 1.260 22 H 0.057 0.943 23 H 0.031 0.969 24 H 0.079 0.921 25 H 0.133 0.867 26 H 0.095 0.905 27 H 0.232 0.768 28 H 0.130 0.870 29 H 0.167 0.833 30 H 0.412 0.588 31 H 0.018 0.982 32 H 0.003 0.997 33 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.577 -4.231 18.450 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.100 4.100 3 C -0.013 4.013 4 C -0.357 4.357 5 S 0.249 5.751 6 C 0.146 3.854 7 O -0.408 6.408 8 N -0.233 5.233 9 C -0.045 4.045 10 C 0.274 3.726 11 O -0.459 6.459 12 N -0.348 5.348 13 C 0.112 3.888 14 C -0.584 4.584 15 H 0.082 0.918 16 C -0.171 4.171 17 N -0.567 5.567 18 Si 0.757 3.243 19 H -0.196 1.196 20 H -0.196 1.196 21 H -0.184 1.184 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.098 0.902 25 H 0.151 0.849 26 H 0.113 0.887 27 H 0.248 0.752 28 H 0.148 0.852 29 H 0.184 0.816 30 H 0.249 0.751 31 H 0.036 0.964 32 H 0.021 0.979 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 13.504 -2.253 18.946 23.375 hybrid contribution -1.256 -0.500 -1.398 1.944 sum 12.248 -2.752 17.548 21.576 Atomic orbital electron populations 1.21877 0.94967 1.02761 1.02024 1.20687 0.95483 0.87012 1.06836 1.19983 0.99656 0.97340 0.84293 1.25409 1.14147 0.93514 1.02589 1.84938 1.71757 1.19024 0.99386 1.22041 0.82961 0.83812 0.96563 1.90922 1.57205 1.48204 1.44452 1.45671 1.56790 1.12439 1.08383 1.21881 0.92640 1.04313 0.85690 1.21303 0.90581 0.79149 0.81603 1.90681 1.63339 1.42107 1.49803 1.45921 1.12911 1.55779 1.20153 1.19083 0.79668 0.94983 0.95109 1.21266 0.97648 1.36580 1.02862 0.91823 1.25529 1.00416 0.95570 0.95544 1.69969 1.21955 1.45756 1.19046 0.85934 0.79117 0.79291 0.79989 1.19646 1.19571 1.18408 0.92417 0.94970 0.90168 0.84877 0.88672 0.75186 0.85174 0.81577 0.75132 0.96384 0.97890 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 9.89 71.98 0.71 -2.40 16 2 C -0.06 -0.79 5.66 29.85 0.17 -0.62 16 3 C 0.10 1.87 5.84 40.71 0.24 2.11 16 4 C -0.22 -3.63 11.23 66.67 0.75 -2.88 16 5 S 0.01 0.14 22.97 -56.49 -1.30 -1.16 16 6 C 0.46 14.77 8.27 129.88 1.07 15.84 16 7 O -0.52 -20.79 17.55 -4.76 -0.08 -20.88 16 8 N -0.51 -13.45 2.09 -647.51 -1.35 -14.81 16 9 C 0.08 2.04 5.75 85.63 0.49 2.53 16 10 C 0.49 17.26 6.55 87.66 0.57 17.84 16 11 O -0.58 -25.35 15.04 -3.06 -0.05 -25.40 16 12 N -0.70 -26.30 5.55 -466.78 -2.59 -28.89 16 13 C 0.24 11.27 4.50 85.63 0.39 11.66 16 14 C -0.55 -29.41 9.83 25.60 0.25 -29.16 16 15 H 0.06 3.57 7.84 -2.91 -0.02 3.55 16 16 C 0.03 1.68 5.47 84.65 0.46 2.14 16 17 N -0.93 -54.73 13.96 21.44 0.30 -54.44 16 18 Si 0.93 43.84 27.47 68.60 1.88 45.72 16 19 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.26 -12.04 6.54 99.48 0.65 -11.39 16 22 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.03 0.91 4.97 -2.39 -0.01 0.90 16 24 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.13 0.76 8.08 -2.39 -0.02 0.74 16 26 H 0.09 0.96 6.39 -2.39 -0.02 0.95 16 27 H 0.23 1.79 8.06 -2.91 -0.02 1.77 16 28 H 0.13 3.03 7.80 -2.38 -0.02 3.01 16 29 H 0.17 2.44 6.21 -2.39 -0.01 2.43 16 30 H 0.41 13.09 8.32 -92.71 -0.77 12.32 16 31 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 32 H 0.00 0.16 7.57 -2.39 -0.02 0.15 16 33 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -76.45 295.40 2.24 -74.21 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: 0.32 Total: 8.59 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: 5.11 Total: 17.05 kcal Atomic # 7 Polarization: -94.49 SS G_CDS: -3.64 Total: -98.13 kcal Atomic # 8 Polarization: -46.15 SS G_CDS: -0.13 Total: -46.28 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 1.88 Total: 45.72 kcal Atomic # 16 Polarization: 0.14 SS G_CDS: -1.30 Total: -1.16 kcal Total: -76.45 2.24 -74.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842585572.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.424 kcal (2) G-P(sol) polarization free energy of solvation -76.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds