Wall clock time and date at job start Mon Mar 30 2020 01:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47308 * 2 1 4 4 C 1.34944 * 126.03811 * 124.97982 * 3 2 1 5 5 C 1.35323 * 107.74638 * 179.75302 * 4 3 2 6 6 C 1.39868 * 107.91739 * 0.39417 * 5 4 3 7 7 C 1.50703 * 125.89291 * 179.87064 * 6 5 4 8 8 O 1.45196 * 109.47396 * 359.70763 * 7 6 5 9 9 C 1.34234 * 116.99938 * 180.02562 * 8 7 6 10 10 O 1.20826 * 119.99712 * 359.72483 * 9 8 7 11 11 C 1.50700 * 120.00068 * 180.02562 * 9 8 7 12 12 S 1.80998 * 109.46929 * 179.97438 * 11 9 8 13 13 C 1.76200 * 99.99783 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00084 * 0.02562 * 13 12 11 15 15 C 1.38796 * 120.00055 * 179.97438 * 13 12 11 16 16 N 1.31631 * 119.99881 * 179.97438 * 15 13 12 17 17 Si 1.86792 * 120.00127 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.47160 * 89.99474 * 17 15 13 19 19 H 1.48502 * 109.47515 * 209.99741 * 17 15 13 20 20 H 1.48503 * 109.46941 * 329.99699 * 17 15 13 21 21 N 1.30828 * 108.20380 * 359.60043 * 6 5 4 22 22 H 1.09005 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46620 * 299.99289 * 1 2 3 24 24 H 1.08998 * 109.47713 * 59.99751 * 1 2 3 25 25 H 1.09003 * 109.46576 * 240.00158 * 2 1 3 26 26 H 1.09005 * 109.47551 * 120.00585 * 2 1 3 27 27 H 1.08006 * 126.12997 * 359.97438 * 4 3 2 28 28 H 1.08005 * 126.03773 * 180.27286 * 5 4 3 29 29 H 1.09012 * 109.46606 * 239.70746 * 7 6 5 30 30 H 1.08996 * 109.47079 * 119.71324 * 7 6 5 31 31 H 1.08992 * 109.47012 * 300.00044 * 11 9 8 32 32 H 1.08999 * 109.46550 * 59.99877 * 11 9 8 33 33 H 0.97005 * 119.99703 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8728 1.9211 0.8941 5 6 3.0758 3.2121 0.5429 6 6 2.3125 3.4723 -0.5999 7 6 2.2361 4.7881 -1.3306 8 8 3.0783 5.7632 -0.6611 9 6 3.1217 6.9962 -1.1899 10 8 2.4813 7.2508 -2.1824 11 6 3.9746 8.0611 -0.5497 12 16 3.8228 9.6010 -1.4888 13 6 4.8895 10.6400 -0.5469 14 1 5.3962 10.2476 0.3223 15 6 5.0795 11.9625 -0.9228 16 7 5.8760 12.7389 -0.2188 17 14 4.2036 12.6411 -2.4266 18 1 2.8902 13.2043 -2.0225 19 1 5.0319 13.7091 -3.0420 20 1 3.9924 11.5495 -3.4110 21 7 1.6808 2.3747 -0.9281 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.3180 1.4129 1.7367 28 1 3.7131 3.9174 1.0557 29 1 1.2049 5.1414 -1.3360 30 1 2.5798 4.6545 -2.3563 31 1 3.6418 8.2257 0.4750 32 1 5.0159 7.7391 -0.5463 33 1 6.0090 13.6631 -0.4817 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844751608.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:17 Heat of formation + Delta-G solvation = -8.836783 kcal Electronic energy + Delta-G solvation = -17192.532610 eV Core-core repulsion = 14153.795031 eV Total energy + Delta-G solvation = -3038.737579 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.43273 -40.05469 -36.38676 -34.82128 -32.47836 -31.40188 -30.13670 -29.47950 -27.15944 -25.65596 -23.44106 -21.75771 -20.69559 -19.94568 -17.92137 -17.50432 -17.06937 -16.53233 -15.85523 -15.47214 -14.98867 -14.69564 -14.25571 -14.05380 -13.95400 -13.53267 -13.09641 -12.83069 -12.67138 -12.51705 -12.17716 -12.04698 -11.77010 -11.31288 -11.03834 -10.79735 -10.76045 -10.72898 -10.19140 -9.86309 -9.42474 -9.04028 -8.74018 -8.59792 -7.00587 -6.32160 -4.06222 1.63975 2.02683 2.52124 2.53989 2.59787 3.11501 3.30956 3.47271 3.52975 4.11208 4.29548 4.47404 4.51956 4.58939 4.72675 4.76302 5.06704 5.08287 5.11230 5.21380 5.26558 5.32679 5.51346 5.62786 5.68354 5.70877 5.93061 5.98131 6.39523 6.58033 6.79116 7.46498 7.90710 8.04520 8.39537 9.13027 10.76834 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.062257 B = 0.002983 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.640840 B = 9383.768192 C = 9747.656301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.132 3.868 3 N -0.373 5.373 4 C 0.048 3.952 5 C -0.246 4.246 6 C 0.071 3.929 7 C 0.152 3.848 8 O -0.352 6.352 9 C 0.482 3.518 10 O -0.488 6.488 11 C -0.098 4.098 12 S -0.140 6.140 13 C -0.522 4.522 14 H 0.092 0.908 15 C 0.097 3.903 16 N -0.877 5.877 17 Si 0.856 3.144 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.235 1.235 21 N -0.286 5.286 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.096 0.904 27 H 0.176 0.824 28 H 0.156 0.844 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.111 0.889 32 H 0.112 0.888 33 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.288 -24.996 2.736 26.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.011 3.989 3 N -0.156 5.156 4 C -0.097 4.097 5 C -0.275 4.275 6 C -0.094 4.094 7 C 0.076 3.924 8 O -0.269 6.269 9 C 0.323 3.677 10 O -0.374 6.374 11 C -0.246 4.246 12 S 0.086 5.914 13 C -0.669 4.669 14 H 0.110 0.890 15 C -0.112 4.112 16 N -0.513 5.513 17 Si 0.681 3.319 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.159 1.159 21 N -0.110 5.110 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.193 0.807 28 H 0.173 0.827 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.129 0.871 32 H 0.130 0.870 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.863 -25.238 0.719 26.759 hybrid contribution 1.028 0.476 1.204 1.654 sum -7.834 -24.762 1.923 26.043 Atomic orbital electron populations 1.22069 0.93761 1.02849 1.03764 1.21686 0.96152 0.77350 1.03740 1.48683 1.35931 1.09932 1.21077 1.22607 0.95631 0.95047 0.96408 1.21410 1.08625 0.96453 1.01023 1.21777 0.97184 0.93868 0.96613 1.20666 0.95286 0.82099 0.94338 1.86427 1.63684 1.21072 1.55684 1.23262 0.80385 0.81496 0.82573 1.90680 1.41487 1.80644 1.24580 1.22998 1.01880 0.95427 1.04260 1.84821 1.63889 1.02904 1.39742 1.22263 1.31132 0.97741 1.15792 0.89015 1.24697 0.94169 0.95637 0.96733 1.69934 1.35446 1.07208 1.38756 0.86746 0.80292 0.80954 0.83916 1.19137 1.19831 1.15914 1.77204 1.23772 0.96319 1.13729 0.90707 0.92029 0.90982 0.89796 0.88578 0.80735 0.82681 0.89170 0.89156 0.87066 0.87006 0.91835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.95 10.10 37.16 0.38 -0.58 16 2 C 0.13 0.77 7.23 -4.05 -0.03 0.74 16 3 N -0.37 -3.71 3.68 -61.37 -0.23 -3.93 16 4 C 0.05 0.44 11.45 -17.22 -0.20 0.25 16 5 C -0.25 -2.87 10.14 -40.01 -0.41 -3.27 16 6 C 0.07 0.95 7.19 -82.41 -0.59 0.35 16 7 C 0.15 2.10 6.09 36.01 0.22 2.32 16 8 O -0.35 -5.40 9.56 -39.27 -0.38 -5.77 16 9 C 0.48 8.73 7.98 36.01 0.29 9.01 16 10 O -0.49 -10.11 15.61 -18.75 -0.29 -10.41 16 11 C -0.10 -1.88 6.27 36.01 0.23 -1.65 16 12 S -0.14 -3.45 18.55 -107.50 -1.99 -5.45 16 13 C -0.52 -14.74 10.04 30.94 0.31 -14.43 16 14 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 15 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 16 N -0.88 -26.12 13.97 55.49 0.78 -25.34 16 17 Si 0.86 21.38 27.74 -169.99 -4.71 16.66 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 21 N -0.29 -3.72 12.42 33.67 0.42 -3.30 16 22 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.10 0.28 8.07 -51.93 -0.42 -0.14 16 27 H 0.18 0.89 8.06 -52.48 -0.42 0.47 16 28 H 0.16 1.71 7.90 -52.48 -0.41 1.30 16 29 H 0.09 1.21 8.14 -51.92 -0.42 0.79 16 30 H 0.09 1.21 8.13 -51.93 -0.42 0.79 16 31 H 0.11 1.98 8.14 -51.92 -0.42 1.56 16 32 H 0.11 2.00 8.14 -51.92 -0.42 1.57 16 33 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 309.94 15.07 4.67 4.67 Total: -1.00 -33.67 309.94 -5.86 -39.52 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -4.21 Total: -2.06 kcal Atomic # 6 Polarization: -4.68 SS G_CDS: 0.10 Total: -4.58 kcal Atomic # 7 Polarization: -33.55 SS G_CDS: 0.97 Total: -32.58 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.67 Total: -16.18 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.71 Total: 16.66 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -1.99 Total: -5.45 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -33.67 -5.86 -39.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844751608.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.688 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds