Wall clock time and date at job start Mon Mar 30 2020 01:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47308 * 2 1 4 4 C 1.34944 * 126.03811 * 124.97982 * 3 2 1 5 5 C 1.35323 * 107.74638 * 179.75302 * 4 3 2 6 6 C 1.39868 * 107.91739 * 0.39417 * 5 4 3 7 7 C 1.50703 * 125.89291 * 179.87064 * 6 5 4 8 8 O 1.45196 * 109.47396 * 359.70763 * 7 6 5 9 9 C 1.34234 * 116.99938 * 180.02562 * 8 7 6 10 10 O 1.20826 * 119.99712 * 359.72483 * 9 8 7 11 11 C 1.50700 * 120.00068 * 180.02562 * 9 8 7 12 12 S 1.80998 * 109.46929 * 179.97438 * 11 9 8 13 13 C 1.76200 * 99.99783 * 179.97438 * 12 11 9 14 14 H 1.07999 * 120.00084 * 0.02562 * 13 12 11 15 15 C 1.38796 * 120.00055 * 179.97438 * 13 12 11 16 16 N 1.31631 * 119.99881 * 179.97438 * 15 13 12 17 17 Si 1.86792 * 120.00127 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.47160 * 89.99474 * 17 15 13 19 19 H 1.48502 * 109.47515 * 209.99741 * 17 15 13 20 20 H 1.48503 * 109.46941 * 329.99699 * 17 15 13 21 21 N 1.30828 * 108.20380 * 359.60043 * 6 5 4 22 22 H 1.09005 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.46620 * 299.99289 * 1 2 3 24 24 H 1.08998 * 109.47713 * 59.99751 * 1 2 3 25 25 H 1.09003 * 109.46576 * 240.00158 * 2 1 3 26 26 H 1.09005 * 109.47551 * 120.00585 * 2 1 3 27 27 H 1.08006 * 126.12997 * 359.97438 * 4 3 2 28 28 H 1.08005 * 126.03773 * 180.27286 * 5 4 3 29 29 H 1.09012 * 109.46606 * 239.70746 * 7 6 5 30 30 H 1.08996 * 109.47079 * 119.71324 * 7 6 5 31 31 H 1.08992 * 109.47012 * 300.00044 * 11 9 8 32 32 H 1.08999 * 109.46550 * 59.99877 * 11 9 8 33 33 H 0.97005 * 119.99703 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.8728 1.9211 0.8941 5 6 3.0758 3.2121 0.5429 6 6 2.3125 3.4723 -0.5999 7 6 2.2361 4.7881 -1.3306 8 8 3.0783 5.7632 -0.6611 9 6 3.1217 6.9962 -1.1899 10 8 2.4813 7.2508 -2.1824 11 6 3.9746 8.0611 -0.5497 12 16 3.8228 9.6010 -1.4888 13 6 4.8895 10.6400 -0.5469 14 1 5.3962 10.2476 0.3223 15 6 5.0795 11.9625 -0.9228 16 7 5.8760 12.7389 -0.2188 17 14 4.2036 12.6411 -2.4266 18 1 2.8902 13.2043 -2.0225 19 1 5.0319 13.7091 -3.0420 20 1 3.9924 11.5495 -3.4110 21 7 1.6808 2.3747 -0.9281 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 3.3180 1.4129 1.7367 28 1 3.7131 3.9174 1.0557 29 1 1.2049 5.1414 -1.3360 30 1 2.5798 4.6545 -2.3563 31 1 3.6418 8.2257 0.4750 32 1 5.0159 7.7391 -0.5463 33 1 6.0090 13.6631 -0.4817 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844751608.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:16 Heat of formation + Delta-G solvation = -30.108749 kcal Electronic energy + Delta-G solvation = -17193.455031 eV Core-core repulsion = 14153.795031 eV Total energy + Delta-G solvation = -3039.660001 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.26689 -41.44623 -37.75389 -35.49491 -34.67155 -32.33473 -31.37991 -30.41849 -28.18345 -27.80995 -24.05410 -22.90188 -21.74038 -20.83790 -19.89535 -18.69134 -18.16513 -17.84725 -17.19590 -16.92011 -16.36459 -15.94446 -15.47361 -15.07060 -15.03338 -14.90996 -14.40152 -14.18477 -13.76547 -13.36746 -13.18493 -13.07483 -13.01272 -12.97753 -12.75788 -12.30674 -11.99331 -11.89413 -11.68809 -11.59560 -11.16603 -10.60170 -10.27730 -9.54213 -9.04340 -8.50799 -6.23958 0.72067 0.84698 1.07363 1.26213 1.33443 1.49264 1.57956 1.71614 1.91871 2.25298 2.65891 2.87421 3.33997 3.75431 3.80131 3.99330 4.09521 4.12293 4.20015 4.22374 4.37619 4.43922 4.49030 4.78913 4.83942 4.90572 5.06979 5.20984 5.24352 5.55296 5.71740 6.13796 6.14655 6.56941 6.66040 6.93396 8.61382 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.062257 B = 0.002983 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.640840 B = 9383.768192 C = 9747.656301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.121 3.879 3 N -0.370 5.370 4 C 0.068 3.932 5 C -0.276 4.276 6 C 0.051 3.949 7 C 0.153 3.847 8 O -0.339 6.339 9 C 0.494 3.506 10 O -0.516 6.516 11 C -0.087 4.087 12 S -0.164 6.164 13 C -0.530 4.530 14 H 0.067 0.933 15 C 0.046 3.954 16 N -0.915 5.915 17 Si 0.913 3.087 18 H -0.262 1.262 19 H -0.260 1.260 20 H -0.234 1.234 21 N -0.318 5.318 22 H 0.101 0.899 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.091 0.909 26 H 0.135 0.865 27 H 0.221 0.779 28 H 0.156 0.844 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.671 -27.221 3.150 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.002 3.998 3 N -0.153 5.153 4 C -0.079 4.079 5 C -0.305 4.305 6 C -0.114 4.114 7 C 0.078 3.922 8 O -0.255 6.255 9 C 0.336 3.664 10 O -0.404 6.404 11 C -0.235 4.235 12 S 0.063 5.937 13 C -0.677 4.677 14 H 0.085 0.915 15 C -0.159 4.159 16 N -0.552 5.552 17 Si 0.735 3.265 18 H -0.186 1.186 19 H -0.184 1.184 20 H -0.158 1.158 21 N -0.143 5.143 22 H 0.119 0.881 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.109 0.891 26 H 0.153 0.847 27 H 0.237 0.763 28 H 0.174 0.826 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.249 -27.488 1.138 29.025 hybrid contribution 1.136 0.921 1.191 1.886 sum -8.113 -26.566 2.329 27.875 Atomic orbital electron populations 1.22037 0.93906 1.04047 1.02059 1.22128 0.96100 0.75518 1.06030 1.49084 1.35392 1.10642 1.20202 1.23245 0.93956 0.94214 0.96467 1.21595 1.09606 0.98026 1.01239 1.21705 0.98439 0.93616 0.97590 1.20733 0.94836 0.82221 0.94456 1.86395 1.63719 1.20151 1.55237 1.22884 0.79584 0.82051 0.81870 1.90677 1.42684 1.81264 1.25807 1.22922 1.03428 0.93032 1.04111 1.84678 1.62935 1.05488 1.40604 1.22409 1.31310 0.98609 1.15390 0.91489 1.25549 0.94876 0.96060 0.99453 1.70014 1.36850 1.07872 1.40492 0.85886 0.79453 0.80531 0.80630 1.18634 1.18383 1.15790 1.77127 1.24735 0.97016 1.15471 0.88067 0.92824 0.93527 0.89067 0.84704 0.76287 0.82642 0.89177 0.89153 0.85335 0.85283 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 10.10 71.98 0.73 -0.83 16 2 C 0.12 1.05 7.23 86.38 0.62 1.67 16 3 N -0.37 -6.53 3.68 -348.06 -1.28 -7.81 16 4 C 0.07 1.04 11.45 83.54 0.96 1.99 16 5 C -0.28 -6.02 10.14 21.99 0.22 -5.80 16 6 C 0.05 1.32 7.19 43.10 0.31 1.63 16 7 C 0.15 4.20 6.09 71.24 0.43 4.63 16 8 O -0.34 -10.13 9.56 -51.46 -0.49 -10.62 16 9 C 0.49 17.46 7.98 71.24 0.57 18.03 16 10 O -0.52 -21.14 15.61 21.96 0.34 -20.79 16 11 C -0.09 -3.25 6.27 71.24 0.45 -2.80 16 12 S -0.16 -8.01 18.55 -56.49 -1.05 -9.05 16 13 C -0.53 -30.15 10.04 67.95 0.68 -29.47 16 14 H 0.07 4.02 8.03 -2.91 -0.02 4.00 16 15 C 0.05 2.67 5.50 84.86 0.47 3.14 16 16 N -0.91 -54.95 13.97 21.65 0.30 -54.64 16 17 Si 0.91 43.96 27.74 68.60 1.90 45.87 16 18 H -0.26 -12.30 7.11 99.48 0.71 -11.59 16 19 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.23 -11.15 6.74 99.48 0.67 -10.48 16 21 N -0.32 -8.07 12.42 -47.39 -0.59 -8.66 16 22 H 0.10 0.42 8.14 -2.38 -0.02 0.40 16 23 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 24 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.14 0.16 8.07 -2.38 -0.02 0.14 16 27 H 0.22 1.18 8.06 -2.91 -0.02 1.16 16 28 H 0.16 3.24 7.90 -2.91 -0.02 3.22 16 29 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 30 H 0.09 2.45 8.13 -2.39 -0.02 2.43 16 31 H 0.13 4.41 8.14 -2.40 -0.02 4.39 16 32 H 0.13 4.43 8.14 -2.40 -0.02 4.41 16 33 H 0.28 15.41 8.31 -92.70 -0.77 14.64 16 Total: -1.00 -73.17 309.94 5.65 -67.52 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: 1.07 Total: 5.99 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 5.44 Total: -7.80 kcal Atomic # 7 Polarization: -69.55 SS G_CDS: -1.57 Total: -71.11 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -0.15 Total: -31.41 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.90 Total: 45.87 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.05 Total: -9.05 kcal Total: -73.17 5.65 -67.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844751608.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.411 kcal (2) G-P(sol) polarization free energy of solvation -73.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds