Wall clock time and date at job start Mon Mar 30 2020 01:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.46879 * 2 1 4 4 C 1.36971 * 119.99635 * 94.06286 * 3 2 1 5 5 H 1.07999 * 120.00353 * 317.00468 * 4 3 2 6 6 C 1.38918 * 119.99955 * 137.29234 * 4 3 2 7 7 N 1.31466 * 120.00235 * 159.69065 * 6 4 3 8 8 Si 1.86800 * 119.99952 * 339.68468 * 6 4 3 9 9 H 1.48500 * 109.47146 * 95.60180 * 8 6 4 10 10 H 1.48501 * 109.47419 * 215.60424 * 8 6 4 11 11 H 1.48500 * 109.47067 * 335.60596 * 8 6 4 12 12 C 1.34771 * 119.99923 * 274.05913 * 3 2 1 13 13 O 1.21940 * 119.99699 * 180.02562 * 12 3 2 14 14 C 1.40292 * 120.00109 * 359.97438 * 12 3 2 15 15 C 1.36570 * 119.99876 * 126.30163 * 14 12 3 16 16 S 1.77250 * 126.26578 * 172.09061 * 15 14 12 17 17 C 1.82392 * 94.46740 * 179.90503 * 16 15 14 18 18 C 1.51120 * 103.49070 * 0.33140 * 17 16 15 19 19 O 1.21254 * 122.90004 * 179.76051 * 18 17 16 20 20 N 1.32215 * 114.20010 * 359.75451 * 18 17 16 21 21 C 1.46498 * 119.81180 * 180.02562 * 20 18 17 22 22 H 1.08997 * 109.47312 * 305.10141 * 1 2 3 23 23 H 1.08999 * 109.46891 * 65.10197 * 1 2 3 24 24 H 1.08995 * 109.47076 * 185.09921 * 1 2 3 25 25 H 1.08997 * 109.46787 * 239.99867 * 2 1 3 26 26 H 1.09001 * 109.46777 * 119.99809 * 2 1 3 27 27 H 0.97003 * 119.99954 * 180.02562 * 7 6 4 28 28 H 1.07995 * 120.00515 * 306.29835 * 14 12 3 29 29 H 1.08999 * 110.82293 * 241.72861 * 17 16 15 30 30 H 1.08996 * 110.54355 * 118.79340 * 17 16 15 31 31 H 1.09004 * 109.47017 * 275.48788 * 21 20 18 32 32 H 1.08997 * 109.47677 * 35.48916 * 21 20 18 33 33 H 1.09000 * 109.47102 * 155.49249 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3258 1.9989 1.1833 5 1 1.6726 1.8878 2.0361 6 6 3.4748 2.7731 1.2846 7 7 3.5808 3.6704 2.2396 8 14 4.8694 2.5391 0.0641 9 1 4.7394 3.5320 -1.0324 10 1 6.1696 2.7320 0.7550 11 1 4.8078 1.1671 -0.5008 12 6 2.1650 2.0441 -1.1642 13 8 2.5719 3.1936 -1.1642 14 6 1.8507 1.4112 -2.3762 15 6 0.9797 1.9998 -3.2480 16 16 0.6159 1.4548 -4.8950 17 6 -0.5800 2.7916 -5.2261 18 6 -0.5776 3.5922 -3.9444 19 8 -1.2602 4.5815 -3.7845 20 7 0.2330 3.1207 -3.0124 21 6 0.3311 3.8027 -1.7195 22 1 -0.3634 0.5909 0.8407 23 1 -0.3633 0.4327 -0.9322 24 1 -0.3633 -1.0236 0.0913 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.3829 4.2112 2.3101 28 1 2.2974 0.4587 -2.6198 29 1 -1.5718 2.3843 -5.4225 30 1 -0.2457 3.4052 -6.0625 31 1 1.0477 4.6208 -1.7937 32 1 -0.6457 4.1994 -1.4428 33 1 0.6645 3.0955 -0.9600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874179612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:48 Heat of formation + Delta-G solvation = 2.486361 kcal Electronic energy + Delta-G solvation = -19600.281005 eV Core-core repulsion = 16562.034434 eV Total energy + Delta-G solvation = -3038.246571 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01530 -39.35082 -36.55137 -34.94360 -32.59675 -31.30769 -30.71354 -29.74502 -26.75171 -25.17697 -23.29391 -22.37207 -20.49811 -19.01806 -18.16473 -17.36849 -16.50353 -16.25382 -15.73016 -15.34478 -15.05308 -14.14045 -14.05907 -13.79172 -13.42839 -13.25737 -13.03862 -12.70858 -12.55255 -12.40622 -12.20635 -11.38970 -11.29187 -11.22409 -11.02524 -10.82289 -10.56988 -10.21636 -10.01993 -9.92915 -8.77512 -8.61570 -8.59914 -7.70432 -7.48557 -6.31239 -4.04742 1.11350 1.26114 1.62801 2.60929 2.86720 3.28248 3.43336 3.62732 3.80737 3.98436 4.49695 4.53553 4.73787 5.00221 5.12418 5.38503 5.54394 5.72697 5.77606 5.84004 5.91802 6.08005 6.12936 6.22594 6.35054 6.39364 6.57980 6.66033 7.19244 7.69275 7.72951 7.87821 8.65097 8.79445 9.30112 9.68970 10.72937 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023465 B = 0.007508 C = 0.007160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.958407 B = 3728.259356 C = 3909.947377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.099 3.901 3 N -0.449 5.449 4 C -0.349 4.349 5 H 0.097 0.903 6 C 0.095 3.905 7 N -0.855 5.855 8 Si 0.913 3.087 9 H -0.254 1.254 10 H -0.308 1.308 11 H -0.280 1.280 12 C 0.476 3.524 13 O -0.551 6.551 14 C -0.185 4.185 15 C 0.131 3.869 16 S -0.096 6.096 17 C -0.136 4.136 18 C 0.515 3.485 19 O -0.502 6.502 20 N -0.531 5.531 21 C 0.066 3.934 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.055 0.945 25 H 0.059 0.941 26 H 0.079 0.921 27 H 0.274 0.726 28 H 0.148 0.852 29 H 0.139 0.861 30 H 0.140 0.860 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.281 -7.670 -11.825 15.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.025 4.025 3 N -0.170 5.170 4 C -0.475 4.475 5 H 0.114 0.886 6 C -0.115 4.115 7 N -0.489 5.489 8 Si 0.743 3.257 9 H -0.179 1.179 10 H -0.237 1.237 11 H -0.206 1.206 12 C 0.269 3.731 13 O -0.438 6.438 14 C -0.221 4.221 15 C -0.080 4.080 16 S 0.142 5.858 17 C -0.287 4.287 18 C 0.301 3.699 19 O -0.378 6.378 20 N -0.252 5.252 21 C -0.077 4.077 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.165 0.835 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.082 -7.323 -12.424 15.651 hybrid contribution 0.389 0.717 0.207 0.841 sum -5.694 -6.606 -12.217 15.010 Atomic orbital electron populations 1.22135 0.96821 1.01094 1.02107 1.21633 0.93969 0.85091 1.01793 1.43921 1.57035 1.10126 1.05910 1.18850 1.08481 1.30674 0.89474 0.88588 1.25329 0.97928 0.92897 0.95395 1.69784 1.28173 1.17663 1.33288 0.86338 0.78476 0.79171 0.81715 1.17943 1.23703 1.20574 1.16218 0.85604 0.86956 0.84368 1.90823 1.49298 1.17220 1.86412 1.21129 1.02295 1.01961 0.96698 1.21668 0.98969 0.90221 0.97133 1.86495 1.52045 1.37280 1.09939 1.24317 1.04435 0.99025 1.00956 1.19654 0.80173 0.85412 0.84644 1.90787 1.41924 1.24680 1.80393 1.44551 1.37831 1.25452 1.17406 1.22918 1.02251 1.00152 0.82349 0.92073 0.93288 0.92582 0.92280 0.90290 0.91599 0.83475 0.84276 0.84233 0.89739 0.91785 0.86265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.43 10.18 37.16 0.38 -2.06 16 2 C 0.10 1.69 5.86 -4.04 -0.02 1.67 16 3 N -0.45 -10.02 2.08 -118.44 -0.25 -10.27 16 4 C -0.35 -9.21 9.66 -15.00 -0.14 -9.36 16 5 H 0.10 2.65 8.06 -52.49 -0.42 2.23 16 6 C 0.10 2.67 4.81 -17.46 -0.08 2.59 16 7 N -0.86 -25.08 13.96 55.50 0.77 -24.30 16 8 Si 0.91 23.51 24.87 -169.99 -4.23 19.29 16 9 H -0.25 -6.93 6.37 56.52 0.36 -6.57 16 10 H -0.31 -7.82 7.11 56.52 0.40 -7.42 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.48 10.64 2.58 -15.49 -0.04 10.60 16 13 O -0.55 -14.31 9.26 4.97 0.05 -14.26 16 14 C -0.18 -3.35 7.92 -39.41 -0.31 -3.66 16 15 C 0.13 2.18 7.01 -15.97 -0.11 2.07 16 16 S -0.10 -1.19 23.35 -107.50 -2.51 -3.70 16 17 C -0.14 -1.49 7.36 36.21 0.27 -1.23 16 18 C 0.51 8.26 7.79 -11.91 -0.09 8.17 16 19 O -0.50 -9.41 17.02 5.58 0.09 -9.31 16 20 N -0.53 -9.44 2.95 -122.24 -0.36 -9.80 16 21 C 0.07 1.33 8.40 59.85 0.50 1.83 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.05 0.74 7.80 -51.93 -0.41 0.33 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.87 6.62 -51.93 -0.34 0.53 16 26 H 0.08 1.32 8.01 -51.93 -0.42 0.90 16 27 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.15 2.25 7.30 -52.49 -0.38 1.87 16 29 H 0.14 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.14 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.08 1.87 7.29 -51.93 -0.38 1.49 16 32 H 0.06 1.22 7.65 -51.93 -0.40 0.82 16 33 H 0.12 2.65 4.20 -51.93 -0.22 2.44 16 LS Contribution 283.44 15.07 4.27 4.27 Total: -1.00 -32.04 283.44 -5.65 -37.68 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -3.83 Total: -0.22 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 0.34 Total: 10.62 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.17 Total: -44.37 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.14 Total: -23.58 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.23 Total: 19.29 kcal Atomic # 16 Polarization: -1.19 SS G_CDS: -2.51 Total: -3.70 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -32.04 -5.65 -37.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874179612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.171 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds