Wall clock time and date at job start Mon Mar 30 2020 01:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46503 * 109.46879 * 2 1 4 4 C 1.36971 * 119.99635 * 94.06286 * 3 2 1 5 5 H 1.07999 * 120.00353 * 317.00468 * 4 3 2 6 6 C 1.38918 * 119.99955 * 137.29234 * 4 3 2 7 7 N 1.31466 * 120.00235 * 159.69065 * 6 4 3 8 8 Si 1.86800 * 119.99952 * 339.68468 * 6 4 3 9 9 H 1.48500 * 109.47146 * 95.60180 * 8 6 4 10 10 H 1.48501 * 109.47419 * 215.60424 * 8 6 4 11 11 H 1.48500 * 109.47067 * 335.60596 * 8 6 4 12 12 C 1.34771 * 119.99923 * 274.05913 * 3 2 1 13 13 O 1.21940 * 119.99699 * 180.02562 * 12 3 2 14 14 C 1.40292 * 120.00109 * 359.97438 * 12 3 2 15 15 C 1.36570 * 119.99876 * 126.30163 * 14 12 3 16 16 S 1.77250 * 126.26578 * 172.09061 * 15 14 12 17 17 C 1.82392 * 94.46740 * 179.90503 * 16 15 14 18 18 C 1.51120 * 103.49070 * 0.33140 * 17 16 15 19 19 O 1.21254 * 122.90004 * 179.76051 * 18 17 16 20 20 N 1.32215 * 114.20010 * 359.75451 * 18 17 16 21 21 C 1.46498 * 119.81180 * 180.02562 * 20 18 17 22 22 H 1.08997 * 109.47312 * 305.10141 * 1 2 3 23 23 H 1.08999 * 109.46891 * 65.10197 * 1 2 3 24 24 H 1.08995 * 109.47076 * 185.09921 * 1 2 3 25 25 H 1.08997 * 109.46787 * 239.99867 * 2 1 3 26 26 H 1.09001 * 109.46777 * 119.99809 * 2 1 3 27 27 H 0.97003 * 119.99954 * 180.02562 * 7 6 4 28 28 H 1.07995 * 120.00515 * 306.29835 * 14 12 3 29 29 H 1.08999 * 110.82293 * 241.72861 * 17 16 15 30 30 H 1.08996 * 110.54355 * 118.79340 * 17 16 15 31 31 H 1.09004 * 109.47017 * 275.48788 * 21 20 18 32 32 H 1.08997 * 109.47677 * 35.48916 * 21 20 18 33 33 H 1.09000 * 109.47102 * 155.49249 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3258 1.9989 1.1833 5 1 1.6726 1.8878 2.0361 6 6 3.4748 2.7731 1.2846 7 7 3.5808 3.6704 2.2396 8 14 4.8694 2.5391 0.0641 9 1 4.7394 3.5320 -1.0324 10 1 6.1696 2.7320 0.7550 11 1 4.8078 1.1671 -0.5008 12 6 2.1650 2.0441 -1.1642 13 8 2.5719 3.1936 -1.1642 14 6 1.8507 1.4112 -2.3762 15 6 0.9797 1.9998 -3.2480 16 16 0.6159 1.4548 -4.8950 17 6 -0.5800 2.7916 -5.2261 18 6 -0.5776 3.5922 -3.9444 19 8 -1.2602 4.5815 -3.7845 20 7 0.2330 3.1207 -3.0124 21 6 0.3311 3.8027 -1.7195 22 1 -0.3634 0.5909 0.8407 23 1 -0.3633 0.4327 -0.9322 24 1 -0.3633 -1.0236 0.0913 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 4.3829 4.2112 2.3101 28 1 2.2974 0.4587 -2.6198 29 1 -1.5718 2.3843 -5.4225 30 1 -0.2457 3.4052 -6.0625 31 1 1.0477 4.6208 -1.7937 32 1 -0.6457 4.1994 -1.4428 33 1 0.6645 3.0955 -0.9600 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874179612.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:47 Heat of formation + Delta-G solvation = -20.065416 kcal Electronic energy + Delta-G solvation = -19601.258923 eV Core-core repulsion = 16562.034434 eV Total energy + Delta-G solvation = -3039.224489 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.45126 -40.97015 -38.00861 -36.64899 -34.52999 -32.72455 -31.99758 -31.26023 -28.25028 -26.89119 -24.81223 -23.81422 -21.99588 -20.65315 -19.49152 -18.97730 -17.87236 -17.80156 -17.25510 -16.97692 -16.60787 -15.84559 -15.40425 -15.14664 -14.90897 -14.76927 -14.56807 -14.18165 -13.99059 -13.91255 -13.72046 -13.05961 -12.81963 -12.75673 -12.48167 -12.39896 -12.11843 -11.83897 -11.77826 -11.43741 -10.72181 -10.46390 -10.01786 -9.51610 -8.67647 -8.42606 -6.14306 -0.13504 0.05718 0.54317 1.21958 1.33701 1.39513 1.53230 1.56451 2.04876 2.46641 2.80621 2.87057 3.15064 3.94701 3.98661 4.06812 4.22675 4.32816 4.36548 4.39813 4.51981 4.64783 4.80196 4.84160 4.98361 5.03583 5.09994 5.41580 5.71501 5.82899 5.90465 6.37192 6.75937 6.90359 7.33197 7.86873 8.65728 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.023465 B = 0.007508 C = 0.007160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.958407 B = 3728.259356 C = 3909.947377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.093 3.907 3 N -0.466 5.466 4 C -0.342 4.342 5 H 0.069 0.931 6 C 0.049 3.951 7 N -0.905 5.905 8 Si 0.961 3.039 9 H -0.281 1.281 10 H -0.307 1.307 11 H -0.258 1.258 12 C 0.487 3.513 13 O -0.594 6.594 14 C -0.218 4.218 15 C 0.136 3.864 16 S -0.028 6.028 17 C -0.128 4.128 18 C 0.510 3.490 19 O -0.533 6.533 20 N -0.544 5.544 21 C 0.079 3.921 22 H 0.035 0.965 23 H 0.047 0.953 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.079 0.921 27 H 0.272 0.728 28 H 0.182 0.818 29 H 0.179 0.821 30 H 0.172 0.828 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.466 -10.267 -15.723 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.029 4.029 3 N -0.187 5.187 4 C -0.469 4.469 5 H 0.087 0.913 6 C -0.156 4.156 7 N -0.543 5.543 8 Si 0.790 3.210 9 H -0.208 1.208 10 H -0.237 1.237 11 H -0.182 1.182 12 C 0.281 3.719 13 O -0.483 6.483 14 C -0.254 4.254 15 C -0.074 4.074 16 S 0.212 5.788 17 C -0.279 4.279 18 C 0.299 3.701 19 O -0.410 6.410 20 N -0.265 5.265 21 C -0.065 4.065 22 H 0.054 0.946 23 H 0.067 0.933 24 H 0.112 0.888 25 H 0.111 0.889 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.199 0.801 29 H 0.196 0.804 30 H 0.190 0.810 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -7.287 -9.984 -16.351 20.498 hybrid contribution 0.519 1.550 1.204 2.030 sum -6.768 -8.435 -15.147 18.611 Atomic orbital electron populations 1.22037 0.95162 1.02930 1.00935 1.21889 0.95283 0.82287 1.03483 1.44084 1.57790 1.12289 1.04562 1.18686 1.07319 1.30530 0.90400 0.91278 1.25918 0.99935 0.93173 0.96530 1.69873 1.28901 1.19807 1.35671 0.85555 0.76756 0.79271 0.79389 1.20843 1.23667 1.18214 1.16866 0.83105 0.86327 0.85599 1.90802 1.50714 1.19426 1.87357 1.21004 1.05043 1.03955 0.95404 1.22224 0.96960 0.88725 0.99505 1.86408 1.51443 1.36352 1.04637 1.24551 1.06578 0.98371 0.98364 1.20526 0.78656 0.85173 0.85729 1.90780 1.42814 1.26200 1.81206 1.44783 1.38713 1.26007 1.16981 1.22447 1.01354 0.98907 0.83768 0.94614 0.93339 0.88843 0.88906 0.90232 0.91876 0.80078 0.80379 0.81019 0.92603 0.91463 0.88437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.25 10.18 71.98 0.73 -3.52 16 2 C 0.09 3.01 5.86 86.38 0.51 3.51 16 3 N -0.47 -20.84 2.08 -646.76 -1.34 -22.19 16 4 C -0.34 -18.79 9.66 84.05 0.81 -17.98 16 5 H 0.07 4.06 8.06 -2.91 -0.02 4.04 16 6 C 0.05 2.89 4.81 84.91 0.41 3.30 16 7 N -0.91 -56.09 13.96 21.66 0.30 -55.79 16 8 Si 0.96 49.87 24.87 68.60 1.71 51.57 16 9 H -0.28 -15.73 6.37 99.48 0.63 -15.09 16 10 H -0.31 -15.62 7.11 99.48 0.71 -14.91 16 11 H -0.26 -12.20 7.11 99.48 0.71 -11.50 16 12 C 0.49 21.67 2.58 84.74 0.22 21.89 16 13 O -0.59 -31.69 9.26 -5.12 -0.05 -31.74 16 14 C -0.22 -7.34 7.92 22.38 0.18 -7.17 16 15 C 0.14 4.13 7.01 83.54 0.59 4.71 16 16 S -0.03 -0.54 23.35 -56.49 -1.32 -1.86 16 17 C -0.13 -2.09 7.36 71.37 0.53 -1.56 16 18 C 0.51 14.89 7.79 88.18 0.69 15.58 16 19 O -0.53 -19.07 17.02 -2.95 -0.05 -19.12 16 20 N -0.54 -18.40 2.95 -660.46 -1.95 -20.34 16 21 C 0.08 3.30 8.40 127.77 1.07 4.37 16 22 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.05 1.34 7.80 -2.39 -0.02 1.32 16 24 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.09 2.39 6.62 -2.39 -0.02 2.38 16 26 H 0.08 2.55 8.01 -2.39 -0.02 2.53 16 27 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 28 H 0.18 4.76 7.30 -2.91 -0.02 4.74 16 29 H 0.18 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.17 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.06 2.61 7.29 -2.39 -0.02 2.59 16 32 H 0.07 2.65 7.65 -2.39 -0.02 2.64 16 33 H 0.10 4.49 4.20 -2.39 -0.01 4.48 16 Total: -1.00 -75.31 283.44 4.08 -71.23 By element: Atomic # 1 Polarization: 4.03 SS G_CDS: 1.06 Total: 5.09 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: 5.73 Total: 23.15 kcal Atomic # 7 Polarization: -95.33 SS G_CDS: -2.99 Total: -98.32 kcal Atomic # 8 Polarization: -50.76 SS G_CDS: -0.10 Total: -50.86 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 1.71 Total: 51.57 kcal Atomic # 16 Polarization: -0.54 SS G_CDS: -1.32 Total: -1.86 kcal Total: -75.31 4.08 -71.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874179612.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.161 kcal (2) G-P(sol) polarization free energy of solvation -75.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds