Wall clock time and date at job start Mon Mar 30 2020 01:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 C 1.34780 * 120.00170 * 275.00492 * 12 2 1 14 14 O 1.21902 * 119.99912 * 359.97438 * 13 12 2 15 15 C 1.40397 * 120.00038 * 180.02562 * 13 12 2 16 16 C 1.36445 * 119.99814 * 179.97438 * 15 13 12 17 17 S 1.77248 * 126.26650 * 0.02562 * 16 15 13 18 18 C 1.82384 * 94.47133 * 179.97438 * 17 16 15 19 19 C 1.51123 * 103.49068 * 0.02562 * 18 17 16 20 20 O 1.21253 * 122.89764 * 180.02562 * 19 18 17 21 21 N 1.32217 * 114.20519 * 359.73866 * 19 18 17 22 22 C 1.46496 * 119.81815 * 180.27028 * 21 19 18 23 23 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 25 25 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 0.97002 * 120.00109 * 94.99223 * 12 2 1 28 28 H 1.07996 * 120.00194 * 359.97438 * 15 13 12 29 29 H 1.08991 * 110.61864 * 118.50047 * 18 17 16 30 30 H 1.08997 * 110.61732 * 241.50081 * 18 17 16 31 31 H 1.08995 * 109.47531 * 270.24340 * 22 21 19 32 32 H 1.08998 * 109.47050 * 30.24124 * 22 21 19 33 33 H 1.09000 * 109.46867 * 150.23876 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8574 1.1646 2.4118 15 6 2.6155 -0.6801 3.5033 16 6 2.7463 0.0007 4.6785 17 16 2.3745 1.7131 4.9453 18 6 2.8398 1.6866 6.7086 19 6 3.2688 0.2559 6.9385 20 8 3.6531 -0.1516 8.0139 21 7 3.1833 -0.5145 5.8674 22 6 3.5632 -1.9267 5.9537 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7011 1.1560 -3.4844 27 1 2.2489 -1.6318 1.1525 28 1 2.8725 -1.7279 3.4547 29 1 3.6674 2.3702 6.8974 30 1 1.9836 1.9364 7.3352 31 1 4.6240 -2.0322 5.7265 32 1 3.3692 -2.2942 6.9613 33 1 2.9790 -2.5045 5.2374 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874251502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:59 Heat of formation + Delta-G solvation = -35.919925 kcal Electronic energy + Delta-G solvation = -18149.314453 eV Core-core repulsion = 15109.402461 eV Total energy + Delta-G solvation = -3039.911992 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.18017 -39.09920 -37.06053 -34.82142 -32.41006 -31.65815 -31.09467 -28.84425 -27.05538 -25.24547 -24.16572 -21.15228 -20.01844 -19.52772 -18.30279 -17.08206 -16.88660 -16.77345 -15.71576 -15.41645 -14.85275 -14.40699 -14.28679 -14.16955 -14.02377 -13.17104 -12.98033 -12.69054 -12.41381 -12.04780 -11.87170 -11.56965 -11.25560 -11.04876 -10.94497 -10.72496 -10.47629 -10.25945 -10.21018 -9.04096 -9.00737 -8.96262 -8.53580 -8.06108 -7.50768 -6.10786 -4.19974 0.83622 1.16676 1.71518 2.19538 2.42860 3.26251 3.31724 3.32716 3.71482 3.96373 4.26360 4.49380 4.72324 4.79361 5.00903 5.07844 5.10785 5.21711 5.31415 5.53590 5.77349 6.04653 6.61672 6.86134 6.99975 7.17963 7.28389 7.48283 7.58528 7.71539 7.94050 8.17226 8.67894 8.78674 9.12498 9.47368 10.95099 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.041277 B = 0.004039 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.173291 B = 6931.233426 C = 7354.624154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.050 0.950 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.700 5.700 13 C 0.541 3.459 14 O -0.549 6.549 15 C -0.230 4.230 16 C 0.158 3.842 17 S 0.039 5.961 18 C -0.200 4.200 19 C 0.525 3.475 20 O -0.500 6.500 21 N -0.546 5.546 22 C 0.066 3.934 23 H 0.025 0.975 24 H 0.016 0.984 25 H 0.090 0.910 26 H 0.265 0.735 27 H 0.389 0.611 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.571 -3.378 15.641 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.347 5.347 13 C 0.329 3.671 14 O -0.433 6.433 15 C -0.268 4.268 16 C -0.055 4.055 17 S 0.279 5.721 18 C -0.350 4.350 19 C 0.313 3.687 20 O -0.374 6.374 21 N -0.269 5.269 22 C -0.078 4.078 23 H 0.044 0.956 24 H 0.035 0.965 25 H 0.108 0.892 26 H 0.075 0.925 27 H 0.221 0.779 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.061 -1.602 15.512 15.892 hybrid contribution 0.903 -2.154 -0.210 2.346 sum 3.964 -3.756 15.302 16.248 Atomic orbital electron populations 1.22070 0.98433 0.99052 1.00940 1.18735 0.91012 0.94055 0.79900 0.93190 1.21188 1.32411 1.13299 0.90384 0.92169 1.24880 0.94805 0.94966 0.99014 1.69895 1.35755 1.22454 1.23949 0.86519 0.79141 0.79595 0.81882 1.20201 1.21147 1.20199 1.46342 1.64594 1.13362 1.10391 1.16229 0.79848 0.87131 0.83851 1.90744 1.52650 1.15602 1.84326 1.20966 1.13274 1.01005 0.91528 1.22364 0.97986 0.97205 0.87959 1.88224 1.79559 1.02868 1.01400 1.24739 1.08494 0.97447 1.04349 1.19843 0.77739 0.87713 0.83444 1.90785 1.45357 1.77005 1.24283 1.44606 1.60782 1.12917 1.08549 1.22097 1.01952 0.78941 1.04831 0.95577 0.96537 0.89193 0.92539 0.77864 0.84192 0.84147 0.84132 0.90743 0.89302 0.89247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.26 6.64 2.56 -69.09 -0.18 6.47 16 3 H 0.05 1.45 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.69 11.31 55.43 0.63 -24.06 16 8 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.70 -14.22 5.06 -58.17 -0.29 -14.51 16 13 C 0.54 10.49 7.48 -15.45 -0.12 10.38 16 14 O -0.55 -12.47 13.77 5.01 0.07 -12.40 16 15 C -0.23 -3.34 9.14 -39.42 -0.36 -3.70 16 16 C 0.16 2.17 7.00 -16.01 -0.11 2.05 16 17 S 0.04 0.54 20.64 -107.50 -2.22 -1.68 16 18 C -0.20 -1.97 7.36 36.21 0.27 -1.70 16 19 C 0.53 6.32 7.79 -11.91 -0.09 6.22 16 20 O -0.50 -7.07 16.94 5.58 0.09 -6.97 16 21 N -0.55 -6.40 2.95 -122.27 -0.36 -6.76 16 22 C 0.07 0.57 10.06 59.84 0.60 1.17 16 23 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.09 2.41 6.06 -51.93 -0.31 2.10 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.39 6.73 8.49 -40.82 -0.35 6.38 16 28 H 0.14 1.54 6.71 -52.49 -0.35 1.19 16 29 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.75 7.50 -51.93 -0.39 0.36 16 33 H 0.09 0.64 6.61 -51.93 -0.34 0.29 16 LS Contribution 295.91 15.07 4.46 4.46 Total: -1.00 -31.82 295.91 -6.48 -38.30 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -3.79 Total: 3.18 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: -0.04 Total: 5.03 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: -0.03 Total: -45.33 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.16 Total: -19.37 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Atomic # 16 Polarization: 0.54 SS G_CDS: -2.22 Total: -1.68 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.82 -6.48 -38.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874251502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.379 kcal (2) G-P(sol) polarization free energy of solvation -31.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds