Wall clock time and date at job start Mon Mar 30 2020 01:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 5 5 H 1.08002 * 120.00299 * 240.00501 * 4 2 1 6 6 C 1.37884 * 119.99942 * 59.72060 * 4 2 1 7 7 N 1.31514 * 119.99698 * 0.28408 * 6 4 2 8 8 Si 1.86794 * 119.99837 * 180.27476 * 6 4 2 9 9 H 1.48504 * 109.47196 * 60.00645 * 8 6 4 10 10 H 1.48504 * 109.46887 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47679 * 300.00280 * 8 6 4 12 12 N 1.46491 * 109.47268 * 120.00149 * 2 1 3 13 13 C 1.34780 * 120.00170 * 275.00492 * 12 2 1 14 14 O 1.21902 * 119.99912 * 359.97438 * 13 12 2 15 15 C 1.40397 * 120.00038 * 180.02562 * 13 12 2 16 16 C 1.36445 * 119.99814 * 179.97438 * 15 13 12 17 17 S 1.77248 * 126.26650 * 0.02562 * 16 15 13 18 18 C 1.82384 * 94.47133 * 179.97438 * 17 16 15 19 19 C 1.51123 * 103.49068 * 0.02562 * 18 17 16 20 20 O 1.21253 * 122.89764 * 180.02562 * 19 18 17 21 21 N 1.32217 * 114.20519 * 359.73866 * 19 18 17 22 22 C 1.46496 * 119.81815 * 180.27028 * 21 19 18 23 23 H 1.09004 * 109.47084 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 25 25 H 1.09001 * 109.47192 * 59.99988 * 1 2 3 26 26 H 0.97005 * 119.99651 * 179.97438 * 7 6 4 27 27 H 0.97002 * 120.00109 * 94.99223 * 12 2 1 28 28 H 1.07996 * 120.00194 * 359.97438 * 15 13 12 29 29 H 1.08991 * 110.61864 * 118.50047 * 18 17 16 30 30 H 1.08997 * 110.61732 * 241.50081 * 18 17 16 31 31 H 1.08995 * 109.47531 * 270.24340 * 22 21 19 32 32 H 1.08998 * 109.47050 * 30.24124 * 22 21 19 33 33 H 1.09000 * 109.46867 * 150.23876 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6945 -0.2426 -2.4828 7 7 0.9385 0.8267 -2.6034 8 14 2.3109 -1.1277 -4.0079 9 1 1.8153 -2.5276 -4.0022 10 1 1.8119 -0.4304 -5.2204 11 1 3.7959 -1.1284 -4.0138 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0183 2.3571 14 8 1.8574 1.1646 2.4118 15 6 2.6155 -0.6801 3.5033 16 6 2.7463 0.0007 4.6785 17 16 2.3745 1.7131 4.9453 18 6 2.8398 1.6866 6.7086 19 6 3.2688 0.2559 6.9385 20 8 3.6531 -0.1516 8.0139 21 7 3.1833 -0.5145 5.8674 22 6 3.5632 -1.9267 5.9537 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7011 1.1560 -3.4844 27 1 2.2489 -1.6318 1.1525 28 1 2.8725 -1.7279 3.4547 29 1 3.6674 2.3702 6.8974 30 1 1.9836 1.9364 7.3352 31 1 4.6240 -2.0322 5.7265 32 1 3.3692 -2.2942 6.9613 33 1 2.9790 -2.5045 5.2374 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874251502.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:58 Heat of formation + Delta-G solvation = -58.226232 kcal Electronic energy + Delta-G solvation = -18150.281727 eV Core-core repulsion = 15109.402461 eV Total energy + Delta-G solvation = -3040.879266 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.15719 -40.62110 -38.13272 -36.64861 -34.26192 -32.87089 -32.02772 -30.59535 -27.90720 -27.28311 -25.42868 -22.78316 -21.24192 -20.93649 -19.54220 -18.55107 -17.93620 -17.79983 -17.27153 -17.02488 -16.32306 -15.83306 -15.59480 -15.34494 -14.91191 -14.78911 -14.33936 -13.90227 -13.64693 -13.38232 -13.13276 -12.96686 -12.86356 -12.71487 -12.55750 -12.24937 -12.19208 -12.08084 -11.53301 -11.05356 -10.59417 -10.44712 -10.00821 -9.72200 -8.73177 -8.12765 -6.29779 -0.29866 0.13004 0.77189 1.20291 1.44671 1.48392 1.49954 1.57634 2.41213 2.52840 2.71739 3.04517 3.18109 4.00669 4.06681 4.11283 4.33264 4.37787 4.47046 4.59017 4.75220 4.82261 4.97180 5.01282 5.17307 5.50856 5.63736 5.67949 5.77748 5.99001 6.16428 6.33567 6.78383 7.05998 7.37798 7.64432 8.93226 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.041277 B = 0.004039 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.173291 B = 6931.233426 C = 7354.624154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H 0.000 1.000 4 C -0.546 4.546 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.264 1.264 10 H -0.288 1.288 11 H -0.271 1.271 12 N -0.700 5.700 13 C 0.538 3.462 14 O -0.591 6.591 15 C -0.244 4.244 16 C 0.181 3.819 17 S -0.021 6.021 18 C -0.176 4.176 19 C 0.524 3.476 20 O -0.518 6.518 21 N -0.544 5.544 22 C 0.056 3.944 23 H 0.038 0.962 24 H 0.013 0.987 25 H 0.064 0.936 26 H 0.264 0.736 27 H 0.405 0.595 28 H 0.179 0.821 29 H 0.165 0.835 30 H 0.166 0.834 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.550 -5.174 16.747 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.169 3.831 3 H 0.018 0.982 4 C -0.584 4.584 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.796 3.204 9 H -0.189 1.189 10 H -0.214 1.214 11 H -0.196 1.196 12 N -0.348 5.348 13 C 0.329 3.671 14 O -0.477 6.477 15 C -0.282 4.282 16 C -0.033 4.033 17 S 0.221 5.779 18 C -0.326 4.326 19 C 0.313 3.687 20 O -0.394 6.394 21 N -0.265 5.265 22 C -0.086 4.086 23 H 0.057 0.943 24 H 0.032 0.968 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.241 0.759 28 H 0.196 0.804 29 H 0.183 0.817 30 H 0.184 0.816 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.056 -3.439 16.649 17.478 hybrid contribution 0.622 -1.512 -0.369 1.676 sum 4.678 -4.951 16.280 17.648 Atomic orbital electron populations 1.21883 0.98413 0.99308 0.99503 1.18291 0.90991 0.91978 0.81868 0.98227 1.21543 1.32420 1.13617 0.90861 0.90836 1.25784 0.94901 0.95608 1.02274 1.70054 1.37000 1.24008 1.24544 0.85420 0.78617 0.78722 0.77685 1.18877 1.21350 1.19625 1.46032 1.65231 1.14050 1.09500 1.16814 0.78981 0.86717 0.84600 1.90744 1.54237 1.17533 1.85216 1.20718 1.15063 1.02587 0.89794 1.22302 0.96103 0.96522 0.88401 1.88473 1.79622 1.04265 1.05529 1.24840 1.10228 0.96823 1.00754 1.20116 0.77165 0.88332 0.83091 1.90792 1.46320 1.77461 1.24871 1.44739 1.59977 1.14170 1.07648 1.22389 1.03165 0.77307 1.05763 0.94258 0.96831 0.91687 0.92648 0.75948 0.80377 0.81706 0.81613 0.89467 0.88934 0.87338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.67 9.26 71.98 0.67 -6.01 16 2 C 0.27 14.00 2.56 44.25 0.11 14.11 16 3 H 0.00 -0.01 7.58 -2.38 -0.02 -0.03 16 4 C -0.55 -28.58 8.73 25.60 0.22 -28.36 16 5 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -52.50 11.31 21.45 0.24 -52.26 16 8 Si 0.97 41.60 29.54 68.60 2.03 43.62 16 9 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 12 N -0.70 -28.34 5.06 -456.09 -2.31 -30.65 16 13 C 0.54 20.87 7.48 84.77 0.63 21.50 16 14 O -0.59 -27.64 13.77 -5.00 -0.07 -27.71 16 15 C -0.24 -6.69 9.14 22.38 0.20 -6.48 16 16 C 0.18 4.68 7.00 83.51 0.58 5.26 16 17 S -0.02 -0.56 20.64 -56.49 -1.17 -1.73 16 18 C -0.18 -3.03 7.36 71.37 0.53 -2.50 16 19 C 0.52 11.25 7.79 88.18 0.69 11.94 16 20 O -0.52 -13.34 16.94 -2.95 -0.05 -13.39 16 21 N -0.54 -11.34 2.95 -660.57 -1.95 -13.29 16 22 C 0.06 0.81 10.06 127.77 1.29 2.09 16 23 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 24 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 3.60 6.06 -2.39 -0.01 3.59 16 26 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 27 H 0.41 13.49 8.49 -92.71 -0.79 12.70 16 28 H 0.18 3.33 6.71 -2.91 -0.02 3.31 16 29 H 0.17 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.17 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.09 1.30 7.50 -2.39 -0.02 1.28 16 33 H 0.11 1.15 6.61 -2.39 -0.02 1.13 16 Total: -1.00 -70.59 295.91 2.46 -68.13 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.36 Total: 14.51 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: 5.37 Total: 12.77 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -4.01 Total: -96.20 kcal Atomic # 8 Polarization: -40.98 SS G_CDS: -0.12 Total: -41.10 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -1.17 Total: -1.73 kcal Total: -70.59 2.46 -68.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874251502.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.904 kcal (2) G-P(sol) polarization free energy of solvation -70.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds