Wall clock time and date at job start Mon Mar 30 2020 01:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47243 * 2 1 4 4 C 1.50699 * 109.47060 * 240.00372 * 2 1 3 5 5 H 1.08001 * 119.99829 * 239.99649 * 4 2 1 6 6 C 1.37876 * 119.99985 * 59.72410 * 4 2 1 7 7 N 1.31517 * 120.00351 * 0.27617 * 6 4 2 8 8 Si 1.86801 * 119.99846 * 180.27737 * 6 4 2 9 9 H 1.48499 * 109.47213 * 60.00070 * 8 6 4 10 10 H 1.48503 * 109.47152 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47294 * 299.99894 * 8 6 4 12 12 N 1.46498 * 109.47485 * 119.99983 * 2 1 3 13 13 C 1.34770 * 120.00459 * 275.00340 * 12 2 1 14 14 O 1.21909 * 119.99800 * 359.97438 * 13 12 2 15 15 C 1.40397 * 120.00270 * 179.97438 * 13 12 2 16 16 C 1.36442 * 119.99996 * 129.36860 * 15 13 12 17 17 S 1.77249 * 126.26700 * 171.05682 * 16 15 13 18 18 C 1.82387 * 94.46951 * 179.90774 * 17 16 15 19 19 C 1.51121 * 103.49357 * 0.32984 * 18 17 16 20 20 O 1.21249 * 122.90012 * 179.73596 * 19 18 17 21 21 N 1.32211 * 114.20135 * 359.75977 * 19 18 17 22 22 C 1.46505 * 119.81618 * 179.97438 * 21 19 18 23 23 H 1.09005 * 109.47158 * 59.99467 * 1 2 3 24 24 H 1.08999 * 109.47186 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47077 * 299.99946 * 1 2 3 26 26 H 0.96996 * 120.00135 * 180.02562 * 7 6 4 27 27 H 0.96999 * 119.99775 * 94.99420 * 12 2 1 28 28 H 1.08002 * 119.99910 * 309.36938 * 15 13 12 29 29 H 1.08998 * 110.81848 * 241.72984 * 18 17 16 30 30 H 1.09001 * 110.41130 * 118.73398 * 18 17 16 31 31 H 1.08998 * 109.47338 * 274.78494 * 22 21 19 32 32 H 1.09006 * 109.46780 * 34.78518 * 22 21 19 33 33 H 1.09003 * 109.47003 * 154.78408 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6945 -0.2425 -2.4827 7 7 0.9384 0.8268 -2.6034 8 14 2.3108 -1.1276 -4.0079 9 1 1.8152 -2.5274 -4.0022 10 1 1.8119 -0.4303 -5.2204 11 1 3.7958 -1.1283 -4.0138 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8576 1.1646 2.4118 15 6 2.6147 -0.6804 3.5035 16 6 3.6385 -0.1459 4.2300 17 16 4.2101 -0.7114 5.8097 18 6 5.5199 0.5504 5.9469 19 6 5.3748 1.3493 4.6724 20 8 6.0838 2.2955 4.4039 21 7 4.4077 0.9277 3.8755 22 6 4.1586 1.6147 2.6057 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7005 1.1557 -3.4843 27 1 2.2490 -1.6317 1.1525 28 1 2.1640 -1.6126 3.8103 29 1 6.5036 0.0838 5.9976 30 1 5.3486 1.1829 6.8180 31 1 3.5010 2.4670 2.7766 32 1 5.1040 1.9629 2.1895 33 1 3.6856 0.9253 1.9064 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874251503.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:02 Heat of formation + Delta-G solvation = -19.815591 kcal Electronic energy + Delta-G solvation = -18663.238382 eV Core-core repulsion = 15624.024726 eV Total energy + Delta-G solvation = -3039.213656 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.27078 -39.36821 -36.72802 -34.82590 -32.55080 -31.72438 -31.00923 -28.85776 -26.73726 -25.30186 -24.01823 -21.54194 -20.23201 -19.33807 -18.36285 -17.49329 -16.75265 -16.19236 -15.74401 -15.47448 -15.28495 -14.66233 -14.27641 -14.01955 -13.62571 -13.36319 -12.93044 -12.66187 -12.45971 -11.90902 -11.55367 -11.48734 -11.29677 -11.09125 -10.89276 -10.65664 -10.42490 -10.28228 -10.26274 -9.24403 -9.10048 -8.95887 -8.58148 -8.03176 -7.71948 -6.15664 -4.25447 0.84722 0.98231 1.37860 2.35891 2.58216 3.23653 3.29417 3.30012 3.39216 3.73624 4.21344 4.45756 4.56587 4.82836 5.16710 5.19257 5.44660 5.66261 5.75467 5.82376 6.04589 6.21760 6.78913 6.87647 6.93690 7.11065 7.37615 7.43267 7.50847 7.65172 7.86123 8.10846 8.57060 8.71562 9.01009 9.42215 10.90040 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030106 B = 0.004644 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.835508 B = 6027.226662 C = 6264.589599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.701 5.701 13 C 0.544 3.456 14 O -0.556 6.556 15 C -0.216 4.216 16 C 0.156 3.844 17 S -0.080 6.080 18 C -0.140 4.140 19 C 0.518 3.482 20 O -0.493 6.493 21 N -0.537 5.537 22 C 0.066 3.934 23 H 0.090 0.910 24 H 0.026 0.974 25 H 0.016 0.984 26 H 0.265 0.735 27 H 0.392 0.608 28 H 0.158 0.842 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.089 0.911 32 H 0.071 0.929 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.347 -4.680 14.770 16.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.349 5.349 13 C 0.331 3.669 14 O -0.439 6.439 15 C -0.252 4.252 16 C -0.055 4.055 17 S 0.159 5.841 18 C -0.291 4.291 19 C 0.304 3.696 20 O -0.367 6.367 21 N -0.258 5.258 22 C -0.077 4.077 23 H 0.109 0.891 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.075 0.925 27 H 0.224 0.776 28 H 0.176 0.824 29 H 0.161 0.839 30 H 0.162 0.838 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 6.229 -4.054 15.345 17.050 hybrid contribution 0.618 -0.106 -1.649 1.765 sum 6.847 -4.159 13.696 15.867 Atomic orbital electron populations 1.22073 0.98319 0.99195 1.00994 1.18777 0.91187 0.93941 0.79983 0.93292 1.21168 1.32576 1.13391 0.90295 0.92101 1.24876 0.94737 0.94932 0.99046 1.69886 1.35628 1.22426 1.24053 0.86514 0.79145 0.79638 0.81833 1.20142 1.21125 1.20194 1.46697 1.63988 1.13812 1.10408 1.16273 0.79785 0.87112 0.83771 1.90929 1.52233 1.15287 1.85475 1.21146 1.00528 1.03619 0.99929 1.21915 0.96512 0.89842 0.97223 1.86680 1.38552 1.41562 1.17304 1.24388 1.03633 0.99869 1.01200 1.19701 0.80279 0.84870 0.84704 1.90812 1.44347 1.26671 1.74895 1.44663 1.29993 1.28871 1.22291 1.22903 1.02453 0.99646 0.82655 0.89141 0.95433 0.96525 0.92476 0.77563 0.82446 0.83886 0.83818 0.89237 0.91046 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.16 0.34 -3.20 16 2 C 0.26 6.37 2.56 -69.08 -0.18 6.19 16 3 H 0.05 1.36 7.58 -51.92 -0.39 0.96 16 4 C -0.54 -13.69 8.73 -34.44 -0.30 -13.99 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.28 11.31 55.43 0.63 -23.65 16 8 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 9 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 12 N -0.70 -13.71 5.03 -58.17 -0.29 -14.00 16 13 C 0.54 10.16 4.53 -15.45 -0.07 10.09 16 14 O -0.56 -12.26 13.03 5.00 0.07 -12.19 16 15 C -0.22 -3.14 9.70 -39.42 -0.38 -3.52 16 16 C 0.16 2.17 6.99 -16.01 -0.11 2.05 16 17 S -0.08 -0.81 23.35 -107.50 -2.51 -3.32 16 18 C -0.14 -1.24 7.36 36.21 0.27 -0.97 16 19 C 0.52 7.15 7.79 -11.91 -0.09 7.06 16 20 O -0.49 -8.23 17.01 5.58 0.09 -8.13 16 21 N -0.54 -8.14 2.95 -122.26 -0.36 -8.50 16 22 C 0.07 1.15 8.37 59.85 0.50 1.65 16 23 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 24 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.39 6.64 8.49 -40.82 -0.35 6.29 16 28 H 0.16 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.14 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.14 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.09 1.68 7.16 -51.93 -0.37 1.31 16 32 H 0.07 1.19 7.63 -51.93 -0.40 0.79 16 33 H 0.11 2.04 4.34 -51.93 -0.23 1.81 16 LS Contribution 292.05 15.07 4.40 4.40 Total: -1.00 -30.31 292.05 -6.82 -37.13 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -3.70 Total: 6.04 kcal Atomic # 6 Polarization: 7.15 SS G_CDS: -0.12 Total: 7.04 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: -0.03 Total: -46.15 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: 0.16 Total: -20.33 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.51 Total: -3.32 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.31 -6.82 -37.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874251503.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.311 kcal (2) G-P(sol) polarization free energy of solvation -30.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds