Wall clock time and date at job start Mon Mar 30 2020 01:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47243 * 2 1 4 4 C 1.50699 * 109.47060 * 240.00372 * 2 1 3 5 5 H 1.08001 * 119.99829 * 239.99649 * 4 2 1 6 6 C 1.37876 * 119.99985 * 59.72410 * 4 2 1 7 7 N 1.31517 * 120.00351 * 0.27617 * 6 4 2 8 8 Si 1.86801 * 119.99846 * 180.27737 * 6 4 2 9 9 H 1.48499 * 109.47213 * 60.00070 * 8 6 4 10 10 H 1.48503 * 109.47152 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47294 * 299.99894 * 8 6 4 12 12 N 1.46498 * 109.47485 * 119.99983 * 2 1 3 13 13 C 1.34770 * 120.00459 * 275.00340 * 12 2 1 14 14 O 1.21909 * 119.99800 * 359.97438 * 13 12 2 15 15 C 1.40397 * 120.00270 * 179.97438 * 13 12 2 16 16 C 1.36442 * 119.99996 * 129.36860 * 15 13 12 17 17 S 1.77249 * 126.26700 * 171.05682 * 16 15 13 18 18 C 1.82387 * 94.46951 * 179.90774 * 17 16 15 19 19 C 1.51121 * 103.49357 * 0.32984 * 18 17 16 20 20 O 1.21249 * 122.90012 * 179.73596 * 19 18 17 21 21 N 1.32211 * 114.20135 * 359.75977 * 19 18 17 22 22 C 1.46505 * 119.81618 * 179.97438 * 21 19 18 23 23 H 1.09005 * 109.47158 * 59.99467 * 1 2 3 24 24 H 1.08999 * 109.47186 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47077 * 299.99946 * 1 2 3 26 26 H 0.96996 * 120.00135 * 180.02562 * 7 6 4 27 27 H 0.96999 * 119.99775 * 94.99420 * 12 2 1 28 28 H 1.08002 * 119.99910 * 309.36938 * 15 13 12 29 29 H 1.08998 * 110.81848 * 241.72984 * 18 17 16 30 30 H 1.09001 * 110.41130 * 118.73398 * 18 17 16 31 31 H 1.08998 * 109.47338 * 274.78494 * 22 21 19 32 32 H 1.09006 * 109.46780 * 34.78518 * 22 21 19 33 33 H 1.09003 * 109.47003 * 154.78408 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6945 -0.2425 -2.4827 7 7 0.9384 0.8268 -2.6034 8 14 2.3108 -1.1276 -4.0079 9 1 1.8152 -2.5274 -4.0022 10 1 1.8119 -0.4303 -5.2204 11 1 3.7958 -1.1283 -4.0138 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8576 1.1646 2.4118 15 6 2.6147 -0.6804 3.5035 16 6 3.6385 -0.1459 4.2300 17 16 4.2101 -0.7114 5.8097 18 6 5.5199 0.5504 5.9469 19 6 5.3748 1.3493 4.6724 20 8 6.0838 2.2955 4.4039 21 7 4.4077 0.9277 3.8755 22 6 4.1586 1.6147 2.6057 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7005 1.1557 -3.4843 27 1 2.2490 -1.6317 1.1525 28 1 2.1640 -1.6126 3.8103 29 1 6.5036 0.0838 5.9976 30 1 5.3486 1.1829 6.8180 31 1 3.5010 2.4670 2.7766 32 1 5.1040 1.9629 2.1895 33 1 3.6856 0.9253 1.9064 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874251503.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:01 Heat of formation + Delta-G solvation = -41.216386 kcal Electronic energy + Delta-G solvation = -18664.166390 eV Core-core repulsion = 15624.024726 eV Total energy + Delta-G solvation = -3040.141664 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.47794 -40.80826 -38.01650 -36.61977 -34.34514 -33.01250 -32.08067 -30.62062 -27.95994 -27.31949 -25.34578 -23.01978 -21.80428 -20.77250 -19.42956 -18.99460 -17.89009 -17.69741 -17.29870 -16.96262 -16.66714 -16.27454 -15.42986 -15.20864 -15.01255 -14.57003 -14.37709 -13.99103 -13.91433 -13.72751 -13.08837 -12.93799 -12.82462 -12.74404 -12.46631 -12.33749 -12.18487 -12.06898 -11.48702 -11.08840 -10.81135 -10.56184 -10.11176 -9.66041 -8.71090 -8.15810 -6.32865 -0.21439 -0.00121 0.50298 1.24678 1.46125 1.47474 1.49175 1.55330 1.96853 2.39604 2.77486 2.89566 3.15088 3.92629 3.97460 3.99448 4.28293 4.31277 4.39260 4.68931 4.72736 4.82396 4.90348 4.97183 5.13594 5.46243 5.62735 5.70898 5.76951 5.93048 6.12370 6.31774 6.74495 6.95299 7.33847 7.53759 8.89887 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.030106 B = 0.004644 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.835508 B = 6027.226662 C = 6264.589599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.271 3.729 3 H 0.003 0.997 4 C -0.546 4.546 5 H 0.073 0.927 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.969 3.031 9 H -0.264 1.264 10 H -0.288 1.288 11 H -0.272 1.272 12 N -0.699 5.699 13 C 0.547 3.453 14 O -0.598 6.598 15 C -0.234 4.234 16 C 0.151 3.849 17 S -0.020 6.020 18 C -0.132 4.132 19 C 0.512 3.488 20 O -0.528 6.528 21 N -0.547 5.547 22 C 0.077 3.923 23 H 0.065 0.935 24 H 0.040 0.960 25 H 0.013 0.987 26 H 0.265 0.735 27 H 0.406 0.594 28 H 0.193 0.807 29 H 0.178 0.822 30 H 0.175 0.825 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.713 -7.006 16.766 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.167 3.833 3 H 0.021 0.979 4 C -0.584 4.584 5 H 0.091 0.909 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.213 1.213 11 H -0.197 1.197 12 N -0.348 5.348 13 C 0.337 3.663 14 O -0.483 6.483 15 C -0.270 4.270 16 C -0.060 4.060 17 S 0.221 5.779 18 C -0.282 4.282 19 C 0.301 3.699 20 O -0.405 6.405 21 N -0.268 5.268 22 C -0.067 4.067 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.032 0.968 26 H 0.074 0.926 27 H 0.242 0.758 28 H 0.210 0.790 29 H 0.196 0.804 30 H 0.193 0.807 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.609 -6.435 17.392 20.045 hybrid contribution 0.260 0.680 -2.153 2.273 sum 7.869 -5.755 15.239 18.090 Atomic orbital electron populations 1.21895 0.98373 0.99443 0.99570 1.18338 0.91074 0.92035 0.81816 0.97923 1.21509 1.32456 1.13611 0.90812 0.90935 1.25749 0.94871 0.95568 1.02198 1.70041 1.36909 1.23954 1.24580 0.85448 0.78569 0.78789 0.77825 1.18878 1.21344 1.19745 1.46413 1.64411 1.14406 1.09550 1.16829 0.78549 0.86554 0.84398 1.90914 1.53869 1.17368 1.86179 1.21052 1.02035 1.05228 0.98729 1.22411 0.95740 0.88814 0.99077 1.86575 1.37846 1.40621 1.12888 1.24599 1.05208 0.99470 0.98925 1.20540 0.78966 0.84617 0.85779 1.90797 1.45366 1.28348 1.75940 1.44865 1.30833 1.29331 1.21795 1.22496 1.01580 0.98648 0.83984 0.91656 0.94138 0.96778 0.92624 0.75837 0.78988 0.80418 0.80720 0.91480 0.91087 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.66 9.26 71.98 0.67 -5.99 16 2 C 0.27 13.60 2.56 44.24 0.11 13.72 16 3 H 0.00 0.17 7.58 -2.38 -0.02 0.15 16 4 C -0.55 -28.16 8.73 25.60 0.22 -27.94 16 5 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -51.95 11.31 21.45 0.24 -51.71 16 8 Si 0.97 41.49 29.54 68.60 2.03 43.51 16 9 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 12 N -0.70 -27.72 5.03 -456.08 -2.29 -30.01 16 13 C 0.55 20.80 4.53 84.77 0.38 21.18 16 14 O -0.60 -27.63 13.03 -5.02 -0.07 -27.70 16 15 C -0.23 -6.50 9.70 22.38 0.22 -6.28 16 16 C 0.15 3.89 6.99 83.51 0.58 4.47 16 17 S -0.02 -0.31 23.35 -56.49 -1.32 -1.63 16 18 C -0.13 -1.76 7.36 71.37 0.53 -1.24 16 19 C 0.51 13.23 7.79 88.19 0.69 13.92 16 20 O -0.53 -17.27 17.01 -2.93 -0.05 -17.32 16 21 N -0.55 -16.22 2.95 -660.54 -1.95 -18.16 16 22 C 0.08 2.81 8.37 127.77 1.07 3.88 16 23 H 0.06 3.58 6.06 -2.38 -0.01 3.57 16 24 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 25 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 27 H 0.41 13.54 8.49 -92.71 -0.79 12.75 16 28 H 0.19 3.84 8.06 -2.91 -0.02 3.82 16 29 H 0.18 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.18 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.07 2.71 7.16 -2.39 -0.02 2.69 16 32 H 0.07 2.51 7.63 -2.38 -0.02 2.49 16 33 H 0.09 3.52 4.34 -2.39 -0.01 3.51 16 Total: -1.00 -69.09 292.05 1.87 -67.22 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: 0.36 Total: 18.77 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 4.92 Total: 17.03 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -4.00 Total: -99.88 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -0.12 Total: -45.02 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -1.32 Total: -1.63 kcal Total: -69.09 1.87 -67.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874251503.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.001 kcal (2) G-P(sol) polarization free energy of solvation -69.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds