Wall clock time and date at job start Mon Mar 30 2020 01:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47295 * 2 1 4 4 C 1.50703 * 109.46696 * 119.99194 * 2 1 3 5 5 H 1.08001 * 119.99592 * 120.00370 * 4 2 1 6 6 C 1.37874 * 120.00733 * 300.00316 * 4 2 1 7 7 N 1.31521 * 119.99372 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00183 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46940 * 90.00297 * 8 6 4 10 10 H 1.48501 * 109.47190 * 209.99854 * 8 6 4 11 11 H 1.48494 * 109.47194 * 330.00227 * 8 6 4 12 12 N 1.46500 * 109.47697 * 239.99736 * 2 1 3 13 13 C 1.34773 * 119.99868 * 85.00062 * 12 2 1 14 14 O 1.21901 * 120.00145 * 359.97438 * 13 12 2 15 15 C 1.40399 * 119.99868 * 180.02562 * 13 12 2 16 16 C 1.36440 * 119.99951 * 179.97438 * 15 13 12 17 17 S 1.77255 * 126.26805 * 359.97438 * 16 15 13 18 18 C 1.82377 * 94.46963 * 179.97438 * 17 16 15 19 19 C 1.51126 * 103.49507 * 0.02562 * 18 17 16 20 20 O 1.21248 * 122.89581 * 180.02562 * 19 18 17 21 21 N 1.32211 * 114.20075 * 359.97438 * 19 18 17 22 22 C 1.46503 * 119.81179 * 180.02562 * 21 19 18 23 23 H 1.09001 * 109.47806 * 300.00475 * 1 2 3 24 24 H 1.09004 * 109.46616 * 60.00107 * 1 2 3 25 25 H 1.08995 * 109.47176 * 180.02562 * 1 2 3 26 26 H 0.96999 * 119.99430 * 180.02562 * 7 6 4 27 27 H 0.96994 * 119.99404 * 265.00396 * 12 2 1 28 28 H 1.08003 * 119.99882 * 359.97438 * 15 13 12 29 29 H 1.08991 * 110.62022 * 241.51363 * 18 17 16 30 30 H 1.08998 * 110.61626 * 118.51516 * 18 17 16 31 31 H 1.08992 * 109.47517 * 359.97154 * 22 21 19 32 32 H 1.08998 * 109.47077 * 119.97779 * 22 21 19 33 33 H 1.09003 * 109.46985 * 239.97045 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8304 2.6033 8 14 2.3211 -1.1201 4.0081 9 1 3.6294 -0.5456 4.4126 10 1 1.3429 -0.9490 5.1122 11 1 2.4857 -2.5659 3.7122 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3570 14 8 1.8568 1.1643 -2.4120 15 6 2.6148 -0.6803 -3.5034 16 6 2.7447 0.0002 -4.6789 17 16 2.3729 1.7126 -4.9458 18 6 2.8384 1.6860 -6.7089 19 6 3.2663 0.2550 -6.9392 20 8 3.6513 -0.1523 -8.0143 21 7 3.1857 -0.5140 -5.8667 22 6 3.5713 -1.9248 -5.9515 23 1 -0.3635 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 0.7093 1.1621 3.4843 27 1 2.2491 -1.6317 -1.1524 28 1 2.8717 -1.7282 -3.4549 29 1 3.6662 2.3694 -6.8977 30 1 1.9824 1.9360 -7.3357 31 1 3.8936 -2.1530 -6.9674 32 1 4.3894 -2.1202 -5.2582 33 1 2.7177 -2.5510 -5.6919 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874251504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:05 Heat of formation + Delta-G solvation = -36.769068 kcal Electronic energy + Delta-G solvation = -18148.845931 eV Core-core repulsion = 15108.897117 eV Total energy + Delta-G solvation = -3039.948814 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.18664 -39.09779 -37.05369 -34.82036 -32.40843 -31.64407 -31.11019 -28.84497 -27.02577 -25.24707 -24.17118 -21.15133 -20.02144 -19.52499 -18.31032 -17.08204 -16.86468 -16.75299 -15.71418 -15.42590 -14.84366 -14.39765 -14.30783 -14.18384 -14.00703 -13.16907 -13.00366 -12.68749 -12.41302 -12.06602 -11.83618 -11.56370 -11.24024 -11.03827 -10.96554 -10.72869 -10.48454 -10.24480 -10.21578 -9.03874 -9.00652 -8.96602 -8.53718 -8.06024 -7.50661 -6.11031 -4.20111 0.83876 1.17006 1.71792 2.19194 2.43243 3.25257 3.31991 3.33604 3.71117 3.96668 4.26350 4.49678 4.72269 4.81767 5.01786 5.08314 5.11346 5.21640 5.34614 5.53332 5.77275 6.04924 6.61343 6.86125 6.99955 7.18006 7.28045 7.48241 7.58656 7.71595 7.94000 8.17041 8.67998 8.78782 9.12590 9.47344 10.94965 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.041235 B = 0.004039 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.867760 B = 6929.965737 C = 7352.985502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.050 0.950 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.700 5.700 13 C 0.541 3.459 14 O -0.549 6.549 15 C -0.227 4.227 16 C 0.157 3.843 17 S 0.038 5.962 18 C -0.200 4.200 19 C 0.526 3.474 20 O -0.501 6.501 21 N -0.546 5.546 22 C 0.062 3.938 23 H 0.089 0.911 24 H 0.016 0.984 25 H 0.025 0.975 26 H 0.264 0.736 27 H 0.389 0.611 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.141 0.859 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.665 -3.376 -15.698 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.068 0.932 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.347 5.347 13 C 0.329 3.671 14 O -0.433 6.433 15 C -0.266 4.266 16 C -0.056 4.056 17 S 0.279 5.721 18 C -0.350 4.350 19 C 0.313 3.687 20 O -0.376 6.376 21 N -0.268 5.268 22 C -0.082 4.082 23 H 0.108 0.892 24 H 0.035 0.965 25 H 0.044 0.956 26 H 0.074 0.926 27 H 0.221 0.779 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.159 0.841 31 H 0.115 0.885 32 H 0.098 0.902 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.156 -1.605 -15.570 15.968 hybrid contribution 0.893 -2.137 0.223 2.327 sum 4.049 -3.743 -15.347 16.307 Atomic orbital electron populations 1.22066 0.98420 0.99055 1.00927 1.18743 0.91029 0.94057 0.79918 0.93188 1.21223 1.32387 1.13213 0.90375 0.92120 1.24882 0.94811 0.94974 0.99026 1.69909 1.35856 1.22454 1.23837 0.86459 0.78601 0.79828 0.82261 1.20580 1.21097 1.19883 1.46341 1.64574 1.13367 1.10401 1.16234 0.79861 0.87128 0.83858 1.90744 1.52628 1.15623 1.84323 1.20953 1.13057 1.01056 0.91484 1.22352 0.98160 0.97123 0.87939 1.88224 1.79603 1.02906 1.01402 1.24740 1.08510 0.97416 1.04355 1.19846 0.77608 0.87718 0.83484 1.90778 1.45502 1.76990 1.24295 1.44580 1.60590 1.13108 1.08551 1.22120 1.02005 0.78861 1.05195 0.89216 0.96533 0.95564 0.92603 0.77853 0.84231 0.84130 0.84145 0.88535 0.90196 0.90222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.26 37.16 0.34 -3.26 16 2 C 0.26 6.64 2.56 -69.08 -0.18 6.46 16 3 H 0.05 1.45 7.58 -51.92 -0.39 1.06 16 4 C -0.53 -13.96 8.73 -34.44 -0.30 -14.26 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.70 11.32 55.43 0.63 -24.07 16 8 Si 0.90 20.44 29.54 -169.99 -5.02 15.42 16 9 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 12 N -0.70 -14.24 5.06 -58.17 -0.29 -14.53 16 13 C 0.54 10.50 7.48 -15.45 -0.12 10.39 16 14 O -0.55 -12.48 13.77 5.01 0.07 -12.41 16 15 C -0.23 -3.32 9.27 -39.42 -0.37 -3.68 16 16 C 0.16 2.16 7.00 -16.01 -0.11 2.05 16 17 S 0.04 0.53 20.64 -107.50 -2.22 -1.69 16 18 C -0.20 -1.97 7.36 36.21 0.27 -1.70 16 19 C 0.53 6.31 7.80 -11.91 -0.09 6.21 16 20 O -0.50 -7.04 16.68 5.59 0.09 -6.95 16 21 N -0.55 -6.39 2.95 -122.27 -0.36 -6.75 16 22 C 0.06 0.54 9.58 59.85 0.57 1.11 16 23 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 24 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 27 H 0.39 6.75 8.49 -40.82 -0.35 6.41 16 28 H 0.14 1.55 7.42 -52.48 -0.39 1.16 16 29 H 0.14 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.14 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.10 0.83 6.99 -51.93 -0.36 0.47 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 297.06 15.07 4.48 4.48 Total: -1.00 -31.79 297.06 -6.59 -38.38 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -3.88 Total: 3.14 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -0.07 Total: 4.99 kcal Atomic # 7 Polarization: -45.33 SS G_CDS: -0.03 Total: -45.36 kcal Atomic # 8 Polarization: -19.52 SS G_CDS: 0.16 Total: -19.36 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Atomic # 16 Polarization: 0.53 SS G_CDS: -2.22 Total: -1.69 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -31.79 -6.59 -38.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874251504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.608 kcal (2) G-P(sol) polarization free energy of solvation -31.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds