Wall clock time and date at job start Mon Mar 30 2020 01:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47295 * 2 1 4 4 C 1.50703 * 109.46696 * 119.99194 * 2 1 3 5 5 H 1.08001 * 119.99592 * 120.00370 * 4 2 1 6 6 C 1.37874 * 120.00733 * 300.00316 * 4 2 1 7 7 N 1.31521 * 119.99372 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00183 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46940 * 90.00297 * 8 6 4 10 10 H 1.48501 * 109.47190 * 209.99854 * 8 6 4 11 11 H 1.48494 * 109.47194 * 330.00227 * 8 6 4 12 12 N 1.46500 * 109.47697 * 239.99736 * 2 1 3 13 13 C 1.34773 * 119.99868 * 85.00062 * 12 2 1 14 14 O 1.21901 * 120.00145 * 359.97438 * 13 12 2 15 15 C 1.40399 * 119.99868 * 180.02562 * 13 12 2 16 16 C 1.36440 * 119.99951 * 179.97438 * 15 13 12 17 17 S 1.77255 * 126.26805 * 359.97438 * 16 15 13 18 18 C 1.82377 * 94.46963 * 179.97438 * 17 16 15 19 19 C 1.51126 * 103.49507 * 0.02562 * 18 17 16 20 20 O 1.21248 * 122.89581 * 180.02562 * 19 18 17 21 21 N 1.32211 * 114.20075 * 359.97438 * 19 18 17 22 22 C 1.46503 * 119.81179 * 180.02562 * 21 19 18 23 23 H 1.09001 * 109.47806 * 300.00475 * 1 2 3 24 24 H 1.09004 * 109.46616 * 60.00107 * 1 2 3 25 25 H 1.08995 * 109.47176 * 180.02562 * 1 2 3 26 26 H 0.96999 * 119.99430 * 180.02562 * 7 6 4 27 27 H 0.96994 * 119.99404 * 265.00396 * 12 2 1 28 28 H 1.08003 * 119.99882 * 359.97438 * 15 13 12 29 29 H 1.08991 * 110.62022 * 241.51363 * 18 17 16 30 30 H 1.08998 * 110.61626 * 118.51516 * 18 17 16 31 31 H 1.08992 * 109.47517 * 359.97154 * 22 21 19 32 32 H 1.08998 * 109.47077 * 119.97779 * 22 21 19 33 33 H 1.09003 * 109.46985 * 239.97045 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4828 7 7 0.9434 0.8304 2.6033 8 14 2.3211 -1.1201 4.0081 9 1 3.6294 -0.5456 4.4126 10 1 1.3429 -0.9490 5.1122 11 1 2.4857 -2.5659 3.7122 12 7 2.0184 -0.6906 -1.1961 13 6 2.1472 -0.0183 -2.3570 14 8 1.8568 1.1643 -2.4120 15 6 2.6148 -0.6803 -3.5034 16 6 2.7447 0.0002 -4.6789 17 16 2.3729 1.7126 -4.9458 18 6 2.8384 1.6860 -6.7089 19 6 3.2663 0.2550 -6.9392 20 8 3.6513 -0.1523 -8.0143 21 7 3.1857 -0.5140 -5.8667 22 6 3.5713 -1.9248 -5.9515 23 1 -0.3635 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 0.7093 1.1621 3.4843 27 1 2.2491 -1.6317 -1.1524 28 1 2.8717 -1.7282 -3.4549 29 1 3.6662 2.3694 -6.8977 30 1 1.9824 1.9360 -7.3357 31 1 3.8936 -2.1530 -6.9674 32 1 4.3894 -2.1202 -5.2582 33 1 2.7177 -2.5510 -5.6919 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874251504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:04 Heat of formation + Delta-G solvation = -58.996573 kcal Electronic energy + Delta-G solvation = -18149.809788 eV Core-core repulsion = 15108.897117 eV Total energy + Delta-G solvation = -3040.912671 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.16181 -40.62206 -38.12377 -36.64868 -34.26238 -32.85936 -32.03969 -30.59774 -27.87763 -27.28599 -25.43253 -22.78514 -21.23846 -20.94186 -19.54299 -18.56539 -17.90066 -17.78733 -17.27975 -17.02535 -16.32476 -15.81411 -15.58692 -15.35853 -14.92305 -14.79121 -14.34181 -13.92003 -13.65452 -13.37541 -13.14493 -12.94469 -12.87514 -12.73744 -12.52585 -12.22055 -12.20041 -12.06418 -11.55242 -11.04840 -10.60178 -10.44948 -10.00955 -9.72248 -8.73182 -8.13132 -6.30019 -0.29680 0.13267 0.77423 1.20112 1.44951 1.48112 1.48637 1.58969 2.41069 2.52936 2.71703 3.04181 3.17915 4.00696 4.08085 4.11623 4.37565 4.41654 4.42679 4.61760 4.74632 4.82096 4.97155 5.01215 5.17223 5.50826 5.63215 5.67940 5.77557 5.98801 6.16246 6.33459 6.78461 7.05911 7.37676 7.64300 8.93157 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.041235 B = 0.004039 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.867760 B = 6929.965737 C = 7352.985502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H 0.000 1.000 4 C -0.545 4.545 5 H 0.074 0.926 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.259 1.259 12 N -0.700 5.700 13 C 0.538 3.462 14 O -0.591 6.591 15 C -0.242 4.242 16 C 0.181 3.819 17 S -0.022 6.022 18 C -0.176 4.176 19 C 0.525 3.475 20 O -0.519 6.519 21 N -0.544 5.544 22 C 0.053 3.947 23 H 0.064 0.936 24 H 0.013 0.987 25 H 0.039 0.961 26 H 0.264 0.736 27 H 0.405 0.595 28 H 0.178 0.822 29 H 0.166 0.834 30 H 0.166 0.834 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.639 -5.174 -16.811 18.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.018 0.982 4 C -0.583 4.583 5 H 0.092 0.908 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.796 3.204 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.183 1.183 12 N -0.348 5.348 13 C 0.329 3.671 14 O -0.477 6.477 15 C -0.280 4.280 16 C -0.034 4.034 17 S 0.220 5.780 18 C -0.326 4.326 19 C 0.314 3.686 20 O -0.395 6.395 21 N -0.265 5.265 22 C -0.089 4.089 23 H 0.083 0.917 24 H 0.032 0.968 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.240 0.760 28 H 0.195 0.805 29 H 0.183 0.817 30 H 0.184 0.816 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 4.146 -3.445 -16.715 17.563 hybrid contribution 0.613 -1.493 0.385 1.659 sum 4.759 -4.938 -16.330 17.712 Atomic orbital electron populations 1.21879 0.98400 0.99319 0.99483 1.18299 0.91008 0.91979 0.81880 0.98221 1.21570 1.32383 1.13517 0.90848 0.90831 1.25786 0.94919 0.95611 1.02287 1.70064 1.37093 1.23997 1.24485 0.85363 0.77697 0.79244 0.78127 1.20463 1.21115 1.18322 1.46032 1.65215 1.14047 1.09512 1.16817 0.78993 0.86713 0.84602 1.90744 1.54216 1.17547 1.85212 1.20696 1.14900 1.02600 0.89765 1.22287 0.96258 0.96437 0.88371 1.88473 1.79665 1.04293 1.05546 1.24841 1.10246 0.96805 1.00744 1.20114 0.77054 0.88330 0.83133 1.90786 1.46434 1.77435 1.24872 1.44714 1.59795 1.14365 1.07649 1.22406 1.03411 0.77245 1.05862 0.91717 0.96831 0.94231 0.92659 0.75952 0.80478 0.81682 0.81633 0.88419 0.88553 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.67 9.26 71.98 0.67 -6.00 16 2 C 0.27 13.99 2.56 44.25 0.11 14.10 16 3 H 0.00 -0.01 7.58 -2.38 -0.02 -0.03 16 4 C -0.54 -28.53 8.73 25.60 0.22 -28.31 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -52.54 11.32 21.45 0.24 -52.30 16 8 Si 0.97 41.64 29.54 68.60 2.03 43.66 16 9 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 10 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 11 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 12 N -0.70 -28.38 5.06 -456.07 -2.31 -30.69 16 13 C 0.54 20.90 7.48 84.77 0.63 21.53 16 14 O -0.59 -27.66 13.77 -4.99 -0.07 -27.73 16 15 C -0.24 -6.66 9.27 22.38 0.21 -6.45 16 16 C 0.18 4.68 7.00 83.51 0.58 5.26 16 17 S -0.02 -0.59 20.64 -56.49 -1.17 -1.75 16 18 C -0.18 -3.02 7.36 71.37 0.53 -2.50 16 19 C 0.53 11.24 7.80 88.19 0.69 11.92 16 20 O -0.52 -13.28 16.68 -2.93 -0.05 -13.33 16 21 N -0.54 -11.33 2.95 -660.56 -1.95 -13.28 16 22 C 0.05 0.76 9.58 127.77 1.22 1.99 16 23 H 0.06 3.59 6.07 -2.39 -0.01 3.58 16 24 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 25 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.41 13.54 8.49 -92.71 -0.79 12.75 16 28 H 0.18 3.36 7.42 -2.91 -0.02 3.34 16 29 H 0.17 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.17 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.10 1.42 6.99 -2.39 -0.02 1.40 16 32 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -70.52 297.06 2.40 -68.12 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.35 Total: 14.56 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 5.32 Total: 12.74 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -4.01 Total: -96.27 kcal Atomic # 8 Polarization: -40.95 SS G_CDS: -0.12 Total: -41.06 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -1.17 Total: -1.75 kcal Total: -70.52 2.40 -68.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874251504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.119 kcal (2) G-P(sol) polarization free energy of solvation -70.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds