Wall clock time and date at job start Mon Mar 30 2020 02:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34235 * 117.00005 * 2 1 4 4 O 1.20830 * 119.99660 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00046 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47022 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.46756 * 184.48286 * 6 5 3 8 8 C 1.36931 * 119.99984 * 94.58786 * 7 6 5 9 9 H 1.07997 * 120.00567 * 38.09125 * 8 7 6 10 10 C 1.38812 * 119.99617 * 217.82239 * 8 7 6 11 11 N 1.31627 * 119.99596 * 211.76969 * 10 8 7 12 12 Si 1.86796 * 120.00450 * 31.76465 * 10 8 7 13 13 H 1.48501 * 109.47153 * 85.98385 * 12 10 8 14 14 H 1.48495 * 109.47490 * 205.98404 * 12 10 8 15 15 H 1.48505 * 109.46895 * 325.98430 * 12 10 8 16 16 C 1.46498 * 119.99885 * 274.58152 * 7 6 5 17 17 C 1.50700 * 109.47213 * 275.31728 * 16 7 6 18 18 N 1.29034 * 124.91856 * 89.69698 * 17 16 7 19 19 C 1.31782 * 117.12559 * 179.81824 * 18 17 16 20 20 C 1.33637 * 114.49903 * 0.46448 * 19 18 17 21 21 S 1.70981 * 124.91788 * 270.00037 * 17 16 7 22 22 H 1.09001 * 109.46795 * 60.00323 * 1 2 3 23 23 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47225 * 300.00227 * 1 2 3 25 25 H 1.09001 * 109.47003 * 59.99379 * 5 3 2 26 26 H 1.09002 * 109.46553 * 299.99489 * 5 3 2 27 27 H 1.08998 * 109.46763 * 64.48436 * 6 5 3 28 28 H 1.08993 * 109.46986 * 304.48162 * 6 5 3 29 29 H 0.96999 * 119.99460 * 179.97438 * 11 10 8 30 30 H 1.09004 * 109.47363 * 35.31209 * 16 7 6 31 31 H 1.08997 * 109.47335 * 155.31596 * 16 7 6 32 32 H 1.07997 * 122.74751 * 180.23117 * 19 18 17 33 33 H 1.08000 * 126.03688 * 179.71930 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4591 2.8199 -0.1096 8 6 6.0470 2.9769 -1.3363 9 1 5.5889 3.6155 -2.0770 10 6 7.2348 2.3195 -1.6258 11 7 8.1102 2.8702 -2.4400 12 14 7.5909 0.6534 -0.8600 13 1 6.9860 -0.4149 -1.6955 14 1 9.0596 0.4484 -0.7815 15 1 7.0102 0.6021 0.5058 16 6 6.2890 2.7299 1.0943 17 6 6.4013 4.0917 1.7299 18 7 5.5908 4.5619 2.6170 19 6 5.8365 5.7736 3.0732 20 6 6.9086 6.3618 2.5342 21 16 7.6171 5.2402 1.3747 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 3.9557 0.7809 -0.8908 26 1 3.9563 0.7807 0.8892 27 1 3.6790 3.2162 0.9263 28 1 3.5449 3.2553 -0.8481 29 1 8.9403 2.4110 -2.6420 30 1 5.8316 2.0363 1.7999 31 1 7.2825 2.3717 0.8248 32 1 5.2197 6.2534 3.8186 33 1 7.2755 7.3504 2.7676 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877709100.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:53 Heat of formation + Delta-G solvation = -14.333276 kcal Electronic energy + Delta-G solvation = -18496.474952 eV Core-core repulsion = 15457.499027 eV Total energy + Delta-G solvation = -3038.975925 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.14202 -38.97278 -36.64348 -35.92291 -32.27084 -31.36485 -29.63521 -27.66402 -26.70882 -24.64449 -23.47904 -21.37490 -19.95122 -19.30759 -17.72154 -17.37783 -16.68093 -16.32416 -16.18627 -15.25215 -14.90862 -14.43678 -13.91943 -13.59203 -13.41812 -13.28139 -12.78832 -12.63492 -12.39276 -12.12364 -12.01054 -11.53019 -11.00377 -10.80816 -10.78389 -10.65089 -10.37010 -10.24467 -10.14247 -9.72503 -9.04744 -8.77659 -8.64365 -8.26835 -7.14768 -6.26668 -3.59929 1.33981 2.08233 2.51724 2.53872 2.98138 3.22178 3.34209 3.38252 3.43886 4.34632 4.75509 4.92157 5.06277 5.15698 5.21891 5.30823 5.53950 5.59220 5.62381 5.70954 5.90592 5.96407 6.12536 6.16014 6.36557 6.50253 6.61272 6.75291 6.85546 7.78439 8.04138 8.21172 8.38446 8.74515 9.47134 9.88293 10.87270 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.007334 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.935335 B = 3816.712787 C = 5204.990575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.465 3.535 4 O -0.512 6.512 5 C -0.137 4.137 6 C 0.161 3.839 7 N -0.579 5.579 8 C -0.288 4.288 9 H 0.081 0.919 10 C 0.052 3.948 11 N -0.866 5.866 12 Si 0.843 3.157 13 H -0.281 1.281 14 H -0.290 1.290 15 H -0.258 1.258 16 C 0.209 3.791 17 C 0.058 3.942 18 N -0.495 5.495 19 C 0.036 3.964 20 C -0.300 4.300 21 S 0.144 5.856 22 H 0.060 0.940 23 H 0.095 0.905 24 H 0.059 0.941 25 H 0.108 0.892 26 H 0.095 0.905 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.268 0.732 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.162 0.838 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.654 -1.774 7.744 9.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.308 3.692 4 O -0.399 6.399 5 C -0.177 4.177 6 C 0.034 3.966 7 N -0.299 5.299 8 C -0.417 4.417 9 H 0.099 0.901 10 C -0.152 4.152 11 N -0.503 5.503 12 Si 0.669 3.331 13 H -0.207 1.207 14 H -0.217 1.217 15 H -0.183 1.183 16 C 0.079 3.921 17 C -0.222 4.222 18 N -0.211 5.211 19 C -0.116 4.116 20 C -0.440 4.440 21 S 0.399 5.601 22 H 0.079 0.921 23 H 0.114 0.886 24 H 0.078 0.922 25 H 0.127 0.873 26 H 0.114 0.886 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.179 0.821 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.274 -1.788 7.090 9.015 hybrid contribution -0.494 -0.349 0.905 1.089 sum -5.768 -2.137 7.995 10.087 Atomic orbital electron populations 1.23173 0.77382 1.03093 1.02285 1.86569 1.22768 1.34525 1.84469 1.24318 0.92580 0.80848 0.71445 1.90633 1.67423 1.36321 1.45567 1.22357 0.85256 1.04606 1.05501 1.20836 0.83869 0.90352 1.01523 1.44103 1.00534 1.83114 1.02110 1.18752 1.06946 1.24893 0.91060 0.90108 1.25503 0.96030 0.97538 0.96156 1.70028 1.07089 1.36302 1.36853 0.87540 0.77171 0.87809 0.80595 1.20729 1.21661 1.18287 1.20293 0.97247 0.86454 0.88064 1.28972 0.93546 1.04135 0.95504 1.66352 1.28514 1.13054 1.13170 1.21658 0.97144 0.91046 1.01780 1.27001 1.04824 1.06337 1.05847 1.84385 1.30333 1.08215 1.37196 0.92135 0.88625 0.92218 0.87337 0.88633 0.92436 0.91463 0.92238 0.91219 0.90133 0.82062 0.81814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.48 10.57 -39.27 -0.41 -5.90 16 3 C 0.46 7.91 7.96 36.00 0.29 8.20 16 4 O -0.51 -9.85 15.68 -18.75 -0.29 -10.14 16 5 C -0.14 -2.37 6.13 -27.88 -0.17 -2.54 16 6 C 0.16 3.22 5.03 -4.04 -0.02 3.20 16 7 N -0.58 -12.86 2.03 -174.61 -0.35 -13.22 16 8 C -0.29 -7.36 9.78 -15.06 -0.15 -7.50 16 9 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 10 C 0.05 1.35 5.04 -17.43 -0.09 1.27 16 11 N -0.87 -23.98 13.97 55.49 0.78 -23.21 16 12 Si 0.84 19.18 26.49 -169.99 -4.50 14.68 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.26 -5.40 5.48 56.52 0.31 -5.09 16 16 C 0.21 4.36 4.43 -5.20 -0.02 4.34 16 17 C 0.06 1.18 6.96 -13.45 -0.09 1.09 16 18 N -0.49 -9.70 10.54 -11.86 -0.13 -9.83 16 19 C 0.04 0.61 11.35 -19.19 -0.22 0.39 16 20 C -0.30 -4.77 11.37 29.12 0.33 -4.44 16 21 S 0.14 2.71 23.18 -107.50 -2.49 0.22 16 22 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 23 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 25 H 0.11 1.92 8.14 -51.93 -0.42 1.50 16 26 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 27 H 0.06 1.17 8.11 -51.93 -0.42 0.75 16 28 H 0.07 1.43 7.83 -51.93 -0.41 1.02 16 29 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 31 H 0.08 1.74 4.46 -51.93 -0.23 1.51 16 32 H 0.16 2.18 8.06 -52.49 -0.42 1.76 16 33 H 0.16 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 302.43 15.07 4.56 4.56 Total: -1.00 -29.33 302.43 -6.02 -35.34 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.09 Total: 2.05 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 0.92 Total: 5.45 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.30 Total: -46.25 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.71 Total: -16.04 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.50 Total: 14.68 kcal Atomic # 16 Polarization: 2.71 SS G_CDS: -2.49 Total: 0.22 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.33 -6.02 -35.34 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709100.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.007 kcal (2) G-P(sol) polarization free energy of solvation -29.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds