Wall clock time and date at job start Mon Mar 30 2020 02:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34235 * 117.00005 * 2 1 4 4 O 1.20830 * 119.99660 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00046 * 180.02562 * 3 2 1 6 6 C 1.53000 * 109.47022 * 179.97438 * 5 3 2 7 7 N 1.46505 * 109.46756 * 184.48286 * 6 5 3 8 8 C 1.36931 * 119.99984 * 94.58786 * 7 6 5 9 9 H 1.07997 * 120.00567 * 38.09125 * 8 7 6 10 10 C 1.38812 * 119.99617 * 217.82239 * 8 7 6 11 11 N 1.31627 * 119.99596 * 211.76969 * 10 8 7 12 12 Si 1.86796 * 120.00450 * 31.76465 * 10 8 7 13 13 H 1.48501 * 109.47153 * 85.98385 * 12 10 8 14 14 H 1.48495 * 109.47490 * 205.98404 * 12 10 8 15 15 H 1.48505 * 109.46895 * 325.98430 * 12 10 8 16 16 C 1.46498 * 119.99885 * 274.58152 * 7 6 5 17 17 C 1.50700 * 109.47213 * 275.31728 * 16 7 6 18 18 N 1.29034 * 124.91856 * 89.69698 * 17 16 7 19 19 C 1.31782 * 117.12559 * 179.81824 * 18 17 16 20 20 C 1.33637 * 114.49903 * 0.46448 * 19 18 17 21 21 S 1.70981 * 124.91788 * 270.00037 * 17 16 7 22 22 H 1.09001 * 109.46795 * 60.00323 * 1 2 3 23 23 H 1.09000 * 109.47007 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47225 * 300.00227 * 1 2 3 25 25 H 1.09001 * 109.47003 * 59.99379 * 5 3 2 26 26 H 1.09002 * 109.46553 * 299.99489 * 5 3 2 27 27 H 1.08998 * 109.46763 * 64.48436 * 6 5 3 28 28 H 1.08993 * 109.46986 * 304.48162 * 6 5 3 29 29 H 0.96999 * 119.99460 * 179.97438 * 11 10 8 30 30 H 1.09004 * 109.47363 * 35.31209 * 16 7 6 31 31 H 1.08997 * 109.47335 * 155.31596 * 16 7 6 32 32 H 1.07997 * 122.74751 * 180.23117 * 19 18 17 33 33 H 1.08000 * 126.03688 * 179.71930 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5664 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4591 2.8199 -0.1096 8 6 6.0470 2.9769 -1.3363 9 1 5.5889 3.6155 -2.0770 10 6 7.2348 2.3195 -1.6258 11 7 8.1102 2.8702 -2.4400 12 14 7.5909 0.6534 -0.8600 13 1 6.9860 -0.4149 -1.6955 14 1 9.0596 0.4484 -0.7815 15 1 7.0102 0.6021 0.5058 16 6 6.2890 2.7299 1.0943 17 6 6.4013 4.0917 1.7299 18 7 5.5908 4.5619 2.6170 19 6 5.8365 5.7736 3.0732 20 6 6.9086 6.3618 2.5342 21 16 7.6171 5.2402 1.3747 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 3.9557 0.7809 -0.8908 26 1 3.9563 0.7807 0.8892 27 1 3.6790 3.2162 0.9263 28 1 3.5449 3.2553 -0.8481 29 1 8.9403 2.4110 -2.6420 30 1 5.8316 2.0363 1.7999 31 1 7.2825 2.3717 0.8248 32 1 5.2197 6.2534 3.8186 33 1 7.2755 7.3504 2.7676 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877709100.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:52 Heat of formation + Delta-G solvation = -32.572380 kcal Electronic energy + Delta-G solvation = -18497.265858 eV Core-core repulsion = 15457.499027 eV Total energy + Delta-G solvation = -3039.766832 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.45157 -40.41395 -38.16491 -37.36547 -34.13225 -32.90194 -31.14524 -28.80216 -28.24346 -26.29612 -24.95890 -22.92165 -21.40041 -20.78020 -19.33882 -18.74179 -18.30803 -17.61882 -17.47719 -17.00385 -16.31897 -15.98920 -15.37982 -15.20734 -14.85925 -14.56499 -14.35071 -14.22159 -13.89428 -13.60573 -13.33805 -12.82466 -12.66615 -12.60176 -12.23685 -12.15232 -11.88722 -11.73005 -11.53302 -11.48845 -10.67689 -10.47371 -10.19777 -9.71484 -8.96516 -8.25563 -5.59319 -0.08321 0.65985 1.09390 1.19936 1.41328 1.52022 1.56149 1.78012 2.02895 2.44683 2.97446 3.37215 3.45949 3.93980 4.15217 4.23317 4.33770 4.35192 4.37281 4.48417 4.52813 4.65695 4.69691 4.73214 4.76696 4.94635 5.18272 5.39444 5.41889 5.87213 6.19109 6.74694 6.87073 6.94200 7.53303 7.98006 8.92470 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.014986 B = 0.007334 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.935335 B = 3816.712787 C = 5204.990575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.367 6.367 3 C 0.472 3.528 4 O -0.540 6.540 5 C -0.130 4.130 6 C 0.168 3.832 7 N -0.586 5.586 8 C -0.281 4.281 9 H 0.036 0.964 10 C 0.011 3.989 11 N -0.914 5.914 12 Si 0.901 3.099 13 H -0.282 1.282 14 H -0.296 1.296 15 H -0.227 1.227 16 C 0.209 3.791 17 C 0.035 3.965 18 N -0.503 5.503 19 C 0.021 3.979 20 C -0.270 4.270 21 S 0.110 5.890 22 H 0.059 0.941 23 H 0.133 0.867 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.117 0.883 27 H 0.055 0.945 28 H 0.044 0.956 29 H 0.267 0.733 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.198 0.802 33 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.462 -2.520 10.040 12.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C 0.317 3.683 4 O -0.430 6.430 5 C -0.169 4.169 6 C 0.042 3.958 7 N -0.307 5.307 8 C -0.410 4.410 9 H 0.054 0.946 10 C -0.190 4.190 11 N -0.554 5.554 12 Si 0.726 3.274 13 H -0.209 1.209 14 H -0.223 1.223 15 H -0.150 1.150 16 C 0.080 3.920 17 C -0.245 4.245 18 N -0.219 5.219 19 C -0.130 4.130 20 C -0.409 4.409 21 S 0.363 5.637 22 H 0.077 0.923 23 H 0.151 0.849 24 H 0.081 0.919 25 H 0.125 0.875 26 H 0.135 0.865 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.215 0.785 33 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -6.124 -2.556 9.424 11.526 hybrid contribution -0.337 0.039 0.264 0.430 sum -6.461 -2.517 9.688 11.914 Atomic orbital electron populations 1.23543 0.75010 1.05642 1.02439 1.86532 1.25001 1.32949 1.83818 1.24071 0.92356 0.81084 0.70813 1.90628 1.67957 1.37358 1.47022 1.22112 0.85997 1.02384 1.06453 1.20651 0.82662 0.92172 1.00296 1.44036 1.01252 1.83910 1.01518 1.18418 1.06774 1.23927 0.91916 0.94584 1.25961 0.95744 1.00223 0.97092 1.70123 1.07857 1.37753 1.39669 0.86596 0.76655 0.82792 0.81393 1.20903 1.22266 1.14999 1.20225 0.96568 0.87529 0.87663 1.28677 0.94656 1.04256 0.96867 1.66349 1.28266 1.14444 1.12851 1.22219 0.97955 0.90322 1.02535 1.27390 1.03420 1.06819 1.03294 1.84519 1.30910 1.09551 1.38683 0.92256 0.84912 0.91888 0.87530 0.86450 0.92690 0.93728 0.92344 0.89278 0.91122 0.78538 0.77991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 10.56 113.37 1.20 1.73 16 2 O -0.37 -10.16 10.57 -51.46 -0.54 -10.71 16 3 C 0.47 15.48 7.96 71.24 0.57 16.05 16 4 O -0.54 -20.47 15.68 21.95 0.34 -20.12 16 5 C -0.13 -4.32 6.13 29.85 0.18 -4.14 16 6 C 0.17 6.75 5.03 86.38 0.43 7.18 16 7 N -0.59 -26.10 2.03 -706.35 -1.43 -27.54 16 8 C -0.28 -14.82 9.78 84.03 0.82 -14.00 16 9 H 0.04 2.18 8.06 -2.91 -0.02 2.16 16 10 C 0.01 0.57 5.04 84.86 0.43 0.99 16 11 N -0.91 -52.40 13.97 21.65 0.30 -52.10 16 12 Si 0.90 39.55 26.49 68.60 1.82 41.36 16 13 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 14 H -0.30 -13.22 7.11 99.48 0.71 -12.51 16 15 H -0.23 -8.72 5.48 99.48 0.55 -8.17 16 16 C 0.21 8.49 4.43 85.63 0.38 8.87 16 17 C 0.04 1.39 6.96 88.52 0.62 2.00 16 18 N -0.50 -18.72 10.54 -191.44 -2.02 -20.74 16 19 C 0.02 0.63 11.35 83.66 0.95 1.58 16 20 C -0.27 -7.76 11.37 66.78 0.76 -7.01 16 21 S 0.11 4.05 23.18 -56.49 -1.31 2.74 16 22 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 23 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.06 1.23 8.13 -2.39 -0.02 1.21 16 25 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 26 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 27 H 0.05 2.22 8.11 -2.39 -0.02 2.20 16 28 H 0.04 1.96 7.83 -2.39 -0.02 1.94 16 29 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 30 H 0.09 3.21 8.09 -2.38 -0.02 3.19 16 31 H 0.07 2.98 4.46 -2.39 -0.01 2.97 16 32 H 0.20 4.49 8.06 -2.91 -0.02 4.46 16 33 H 0.20 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -64.80 302.43 4.45 -60.35 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.95 Total: 13.48 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 6.33 Total: 13.26 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -3.15 Total: -100.37 kcal Atomic # 8 Polarization: -30.63 SS G_CDS: -0.20 Total: -30.83 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 1.82 Total: 41.36 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.31 Total: 2.74 kcal Total: -64.80 4.45 -60.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877709100.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.782 kcal (2) G-P(sol) polarization free energy of solvation -64.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds