Wall clock time and date at job start Mon Mar 30 2020 02:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.46957 * 299.99389 * 5 3 2 7 7 C 1.52994 * 109.47379 * 59.99724 * 5 3 2 8 8 C 1.50702 * 109.47109 * 184.99912 * 7 5 3 9 9 C 1.33642 * 126.03868 * 89.71906 * 8 7 5 10 10 N 1.31775 * 114.50138 * 179.78603 * 9 8 7 11 11 C 1.29029 * 117.12378 * 0.52082 * 10 9 8 12 12 S 1.70981 * 110.16821 * 359.70912 * 11 10 9 13 13 N 1.46906 * 109.46794 * 179.97438 * 5 3 2 14 14 C 1.46901 * 111.00241 * 85.00077 * 13 5 3 15 15 C 1.50697 * 109.47658 * 179.97438 * 14 13 5 16 16 H 1.08003 * 119.99446 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00124 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99647 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00148 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47312 * 89.99535 * 19 17 15 21 21 H 1.48503 * 109.47120 * 209.99778 * 19 17 15 22 22 H 1.48499 * 109.46886 * 329.99365 * 19 17 15 23 23 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 24 24 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 26 26 H 1.08995 * 109.47119 * 305.00171 * 7 5 3 27 27 H 1.09003 * 109.47196 * 65.00044 * 7 5 3 28 28 H 1.08001 * 122.74593 * 359.96918 * 9 8 7 29 29 H 1.08007 * 124.91695 * 179.75324 * 11 10 9 30 30 H 1.00897 * 110.99653 * 208.94986 * 13 5 3 31 31 H 1.09005 * 109.46735 * 300.00324 * 14 13 5 32 32 H 1.09004 * 109.46907 * 59.99362 * 14 13 5 33 33 H 0.97003 * 119.99717 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7806 0.8892 7 6 4.1129 0.5815 -1.2501 8 6 5.6185 0.5521 -1.1903 9 6 6.3649 -0.4121 -0.6435 10 7 7.6644 -0.2080 -0.7219 11 6 8.0555 0.8797 -1.2953 12 16 6.7052 1.7866 -1.8224 13 7 3.9828 2.6836 -0.0011 14 6 4.0180 3.2227 1.3650 15 6 4.4490 4.6662 1.3245 16 1 4.6739 5.1362 0.3785 17 6 4.5552 5.3870 2.4950 18 7 4.9318 6.6466 2.4597 19 14 4.1655 4.5741 4.1311 20 1 5.3997 3.9633 4.6868 21 1 3.6474 5.5931 5.0791 22 1 3.1395 3.5200 3.9281 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.7311 -0.4384 -1.2960 27 1 3.7952 1.1287 -2.1376 28 1 5.9382 -1.2884 -0.1782 29 1 9.0865 1.1744 -1.4243 30 1 4.8756 2.7965 -0.4574 31 1 3.0250 3.1519 1.8092 32 1 4.7256 2.6492 1.9638 33 1 5.0069 7.1536 3.2832 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879992860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:56 Heat of formation + Delta-G solvation = -31.654873 kcal Electronic energy + Delta-G solvation = -18495.774041 eV Core-core repulsion = 15456.046996 eV Total energy + Delta-G solvation = -3039.727045 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.29650 -39.56466 -36.83969 -35.69100 -33.21279 -31.72343 -29.38222 -27.63281 -26.59700 -25.17852 -23.36471 -21.45293 -20.47928 -19.79780 -18.12243 -17.41253 -16.90323 -16.34521 -16.12371 -15.46631 -14.96695 -14.59952 -14.20762 -13.90199 -13.72287 -13.63742 -13.00027 -12.72324 -12.51368 -12.45137 -12.18086 -11.87326 -11.53309 -11.08810 -10.74319 -10.61574 -10.47770 -10.18510 -9.82908 -9.62570 -9.36481 -9.15872 -8.91860 -8.61705 -7.75462 -6.06999 -4.04869 0.68099 1.36515 1.77004 2.53495 2.81155 2.87806 3.27140 3.34880 3.38044 4.32883 4.40958 4.62529 4.75831 4.90555 5.14485 5.17287 5.20256 5.23703 5.25729 5.28250 5.43286 5.57917 5.69435 5.87075 6.13632 6.56239 6.63716 6.89158 7.46593 7.68057 7.70885 8.08291 8.14716 8.58511 8.99830 9.54094 11.06111 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.008225 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.996125 B = 3403.581007 C = 5146.375265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.457 3.543 4 O -0.467 6.467 5 C 0.098 3.902 6 H 0.079 0.921 7 C -0.039 4.039 8 C -0.226 4.226 9 C 0.036 3.964 10 N -0.474 5.474 11 C 0.010 3.990 12 S 0.154 5.846 13 N -0.657 5.657 14 C 0.164 3.836 15 C -0.513 4.513 16 H 0.081 0.919 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.874 3.126 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.268 1.268 23 H 0.061 0.939 24 H 0.097 0.903 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.092 0.908 28 H 0.175 0.825 29 H 0.198 0.802 30 H 0.344 0.656 31 H 0.032 0.968 32 H -0.019 1.019 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.491 -16.183 -8.312 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.296 3.704 4 O -0.349 6.349 5 C -0.015 4.015 6 H 0.097 0.903 7 C -0.079 4.079 8 C -0.348 4.348 9 C -0.116 4.116 10 N -0.187 5.187 11 C -0.287 4.287 12 S 0.408 5.592 13 N -0.294 5.294 14 C 0.037 3.963 15 C -0.551 4.551 16 H 0.099 0.901 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.701 3.299 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.192 1.192 23 H 0.079 0.921 24 H 0.115 0.885 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.110 0.890 28 H 0.192 0.808 29 H 0.215 0.785 30 H 0.167 0.833 31 H 0.050 0.950 32 H -0.001 1.001 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.964 -14.854 -8.641 17.212 hybrid contribution 0.095 -1.300 1.829 2.245 sum -0.869 -16.154 -6.812 17.553 Atomic orbital electron populations 1.23180 0.76992 1.03085 1.02524 1.86478 1.22933 1.34226 1.85036 1.23819 0.91814 0.81242 0.73487 1.90701 1.66180 1.36032 1.42026 1.21045 0.87783 0.93688 0.98991 0.90316 1.20161 0.86912 1.02704 0.98106 1.25928 1.00863 0.99167 1.08831 1.21757 0.87381 1.00767 1.01658 1.66338 1.16127 1.19444 1.16818 1.28432 1.04646 0.93951 1.01676 1.84430 0.98199 1.22900 1.53717 1.60182 1.35680 1.10793 1.22705 1.20137 0.96110 0.96217 0.83807 1.20933 1.45270 0.93451 0.95444 0.90076 1.24848 0.94687 0.94733 0.98785 1.69889 1.47689 1.08123 1.27902 0.86879 0.79091 0.79656 0.84277 1.20238 1.20936 1.19246 0.92058 0.88500 0.92116 0.87861 0.88977 0.80756 0.78482 0.83280 0.94980 1.00117 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.37 -5.17 10.37 -39.25 -0.41 -5.57 16 3 C 0.46 7.99 7.13 36.01 0.26 8.25 16 4 O -0.47 -10.03 15.67 -18.75 -0.29 -10.32 16 5 C 0.10 1.64 2.55 -68.86 -0.18 1.46 16 6 H 0.08 1.28 7.80 -51.93 -0.41 0.87 16 7 C -0.04 -0.49 5.31 -27.89 -0.15 -0.63 16 8 C -0.23 -2.93 5.28 -35.92 -0.19 -3.12 16 9 C 0.04 0.46 11.25 -19.19 -0.22 0.25 16 10 N -0.47 -6.54 10.54 -15.75 -0.17 -6.70 16 11 C 0.01 0.12 12.23 51.59 0.63 0.75 16 12 S 0.15 1.96 21.52 -107.50 -2.31 -0.35 16 13 N -0.66 -13.88 5.83 -109.22 -0.64 -14.52 16 14 C 0.16 4.13 4.20 -4.98 -0.02 4.11 16 15 C -0.51 -14.95 9.87 -34.44 -0.34 -15.29 16 16 H 0.08 2.54 8.06 -52.48 -0.42 2.12 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 19 Si 0.87 22.08 27.47 -169.99 -4.67 17.41 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.27 -6.63 6.54 56.52 0.37 -6.26 16 23 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 24 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 26 H 0.10 1.03 7.99 -51.93 -0.42 0.61 16 27 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.18 1.81 8.06 -52.49 -0.42 1.39 16 29 H 0.20 1.72 8.06 -52.48 -0.42 1.29 16 30 H 0.34 6.83 5.84 -39.29 -0.23 6.60 16 31 H 0.03 0.86 6.68 -51.93 -0.35 0.51 16 32 H -0.02 -0.46 7.48 -51.93 -0.39 -0.85 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 300.80 15.07 4.53 4.53 Total: -1.00 -34.89 300.80 -6.32 -41.21 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -3.91 Total: 2.08 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: 0.77 Total: -0.76 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: -0.03 Total: -48.24 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.70 Total: -15.89 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.31 Total: -0.35 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -34.89 -6.32 -41.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879992860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.559 kcal (2) G-P(sol) polarization free energy of solvation -34.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds