Wall clock time and date at job start Mon Mar 30 2020 02:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34226 * 116.99826 * 2 1 4 4 O 1.20826 * 120.00044 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99715 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.46957 * 299.99389 * 5 3 2 7 7 C 1.52994 * 109.47379 * 59.99724 * 5 3 2 8 8 C 1.50702 * 109.47109 * 184.99912 * 7 5 3 9 9 C 1.33642 * 126.03868 * 89.71906 * 8 7 5 10 10 N 1.31775 * 114.50138 * 179.78603 * 9 8 7 11 11 C 1.29029 * 117.12378 * 0.52082 * 10 9 8 12 12 S 1.70981 * 110.16821 * 359.70912 * 11 10 9 13 13 N 1.46906 * 109.46794 * 179.97438 * 5 3 2 14 14 C 1.46901 * 111.00241 * 85.00077 * 13 5 3 15 15 C 1.50697 * 109.47658 * 179.97438 * 14 13 5 16 16 H 1.08003 * 119.99446 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00124 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99647 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 120.00148 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47312 * 89.99535 * 19 17 15 21 21 H 1.48503 * 109.47120 * 209.99778 * 19 17 15 22 22 H 1.48499 * 109.46886 * 329.99365 * 19 17 15 23 23 H 1.09001 * 109.47157 * 60.00159 * 1 2 3 24 24 H 1.09004 * 109.47122 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47070 * 300.00317 * 1 2 3 26 26 H 1.08995 * 109.47119 * 305.00171 * 7 5 3 27 27 H 1.09003 * 109.47196 * 65.00044 * 7 5 3 28 28 H 1.08001 * 122.74593 * 359.96918 * 9 8 7 29 29 H 1.08007 * 124.91695 * 179.75324 * 11 10 9 30 30 H 1.00897 * 110.99653 * 208.94986 * 13 5 3 31 31 H 1.09005 * 109.46735 * 300.00324 * 14 13 5 32 32 H 1.09004 * 109.46907 * 59.99362 * 14 13 5 33 33 H 0.97003 * 119.99717 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9564 0.7806 0.8892 7 6 4.1129 0.5815 -1.2501 8 6 5.6185 0.5521 -1.1903 9 6 6.3649 -0.4121 -0.6435 10 7 7.6644 -0.2080 -0.7219 11 6 8.0555 0.8797 -1.2953 12 16 6.7052 1.7866 -1.8224 13 7 3.9828 2.6836 -0.0011 14 6 4.0180 3.2227 1.3650 15 6 4.4490 4.6662 1.3245 16 1 4.6739 5.1362 0.3785 17 6 4.5552 5.3870 2.4950 18 7 4.9318 6.6466 2.4597 19 14 4.1655 4.5741 4.1311 20 1 5.3997 3.9633 4.6868 21 1 3.6474 5.5931 5.0791 22 1 3.1395 3.5200 3.9281 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 3.7311 -0.4384 -1.2960 27 1 3.7952 1.1287 -2.1376 28 1 5.9382 -1.2884 -0.1782 29 1 9.0865 1.1744 -1.4243 30 1 4.8756 2.7965 -0.4574 31 1 3.0250 3.1519 1.8092 32 1 4.7256 2.6492 1.9638 33 1 5.0069 7.1536 3.2832 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879992860.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:55 Heat of formation + Delta-G solvation = -57.503045 kcal Electronic energy + Delta-G solvation = -18496.894902 eV Core-core repulsion = 15456.046996 eV Total energy + Delta-G solvation = -3040.847906 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.58971 -40.56245 -38.19380 -37.09229 -35.11239 -33.40899 -30.71207 -28.84740 -28.06540 -26.38704 -24.46847 -23.46641 -21.71316 -20.83494 -19.23966 -18.92809 -18.71044 -17.62244 -17.37790 -16.72261 -16.43453 -16.08719 -15.63782 -15.19680 -14.84672 -14.83080 -14.57517 -14.21762 -14.13249 -13.70302 -13.56801 -13.03889 -12.93073 -12.67049 -12.32838 -12.05226 -11.90041 -11.76169 -11.69494 -11.37814 -10.85802 -10.61888 -10.24001 -9.91003 -9.40433 -8.33887 -6.37963 -0.28721 0.40782 0.80961 1.20520 1.27968 1.31267 1.41416 1.65495 1.87534 2.29036 2.99278 3.23033 3.45495 3.68760 3.74395 3.99480 4.12189 4.29847 4.36020 4.36723 4.42042 4.62666 4.71824 4.73442 4.84796 4.92979 5.21863 5.33158 5.45945 5.75263 6.38592 6.44252 6.67596 6.71626 6.84931 7.25537 8.82603 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.011688 B = 0.008225 C = 0.005439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2394.996125 B = 3403.581007 C = 5146.375265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.356 6.356 3 C 0.463 3.537 4 O -0.517 6.517 5 C 0.094 3.906 6 H 0.091 0.909 7 C -0.026 4.026 8 C -0.237 4.237 9 C 0.037 3.963 10 N -0.498 5.498 11 C 0.020 3.980 12 S 0.125 5.875 13 N -0.673 5.673 14 C 0.179 3.821 15 C -0.525 4.525 16 H 0.042 0.958 17 C 0.013 3.987 18 N -0.941 5.941 19 Si 0.943 3.057 20 H -0.260 1.260 21 H -0.277 1.277 22 H -0.259 1.259 23 H 0.061 0.939 24 H 0.141 0.859 25 H 0.051 0.949 26 H 0.138 0.862 27 H 0.091 0.909 28 H 0.199 0.801 29 H 0.227 0.773 30 H 0.349 0.651 31 H 0.017 0.983 32 H -0.009 1.009 33 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.655 -18.995 -7.656 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C 0.305 3.695 4 O -0.403 6.403 5 C -0.018 4.018 6 H 0.108 0.892 7 C -0.066 4.066 8 C -0.358 4.358 9 C -0.114 4.114 10 N -0.211 5.211 11 C -0.276 4.276 12 S 0.379 5.621 13 N -0.310 5.310 14 C 0.051 3.949 15 C -0.564 4.564 16 H 0.060 0.940 17 C -0.185 4.185 18 N -0.581 5.581 19 Si 0.766 3.234 20 H -0.184 1.184 21 H -0.202 1.202 22 H -0.184 1.184 23 H 0.080 0.920 24 H 0.159 0.841 25 H 0.070 0.930 26 H 0.156 0.844 27 H 0.110 0.890 28 H 0.216 0.784 29 H 0.243 0.757 30 H 0.173 0.827 31 H 0.035 0.965 32 H 0.008 0.992 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.127 -17.712 -8.008 19.470 hybrid contribution 0.145 -0.452 1.523 1.595 sum -0.982 -18.163 -6.485 19.311 Atomic orbital electron populations 1.23549 0.75000 1.05822 1.02168 1.86463 1.24735 1.31975 1.84097 1.23933 0.92047 0.81444 0.72112 1.90690 1.67214 1.37805 1.44640 1.21197 0.87692 0.91365 1.01594 0.89183 1.20131 0.86668 1.04000 0.95832 1.25935 1.00881 0.99185 1.09786 1.22160 0.87105 1.01267 1.00889 1.66406 1.16739 1.20157 1.17824 1.28956 1.05564 0.93022 1.00084 1.84586 0.99400 1.23804 1.54337 1.59965 1.36324 1.14254 1.20455 1.19785 0.94944 0.93993 0.86167 1.21197 1.45306 0.95758 0.94106 0.94010 1.25776 0.94386 0.95280 1.03030 1.70032 1.48954 1.09815 1.29290 0.85785 0.79646 0.78902 0.79078 1.18422 1.20233 1.18351 0.92045 0.84147 0.93001 0.84399 0.89040 0.78405 0.75680 0.82696 0.96481 0.99190 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.36 -9.02 10.37 -51.38 -0.53 -9.56 16 3 C 0.46 15.57 7.13 71.24 0.51 16.08 16 4 O -0.52 -22.21 15.67 21.96 0.34 -21.86 16 5 C 0.09 2.99 2.55 44.17 0.11 3.11 16 6 H 0.09 2.70 7.80 -2.39 -0.02 2.69 16 7 C -0.03 -0.61 5.31 29.85 0.16 -0.45 16 8 C -0.24 -5.68 5.28 24.64 0.13 -5.55 16 9 C 0.04 0.85 11.25 83.66 0.94 1.79 16 10 N -0.50 -12.67 10.54 -203.74 -2.15 -14.81 16 11 C 0.02 0.46 12.23 130.65 1.60 2.06 16 12 S 0.13 3.11 21.52 -56.49 -1.22 1.89 16 13 N -0.67 -28.42 5.83 -499.45 -2.91 -31.33 16 14 C 0.18 8.99 4.20 85.56 0.36 9.35 16 15 C -0.53 -31.43 9.87 25.60 0.25 -31.18 16 16 H 0.04 2.75 8.06 -2.91 -0.02 2.72 16 17 C 0.01 0.81 5.47 84.65 0.46 1.27 16 18 N -0.94 -59.52 13.96 21.45 0.30 -59.22 16 19 Si 0.94 45.34 27.47 68.60 1.88 47.22 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.26 -12.04 6.54 99.48 0.65 -11.39 16 23 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 24 H 0.14 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.05 1.12 8.13 -2.39 -0.02 1.10 16 26 H 0.14 2.21 7.99 -2.39 -0.02 2.19 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.20 3.41 8.06 -2.91 -0.02 3.39 16 29 H 0.23 3.45 8.06 -2.91 -0.02 3.43 16 30 H 0.35 13.95 5.84 -89.70 -0.52 13.43 16 31 H 0.02 0.91 6.68 -2.38 -0.02 0.89 16 32 H -0.01 -0.45 7.48 -2.39 -0.02 -0.47 16 33 H 0.27 15.78 8.31 -92.71 -0.77 15.00 16 Total: -1.00 -76.91 300.80 1.99 -74.92 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.55 Total: 14.53 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 5.72 Total: -1.79 kcal Atomic # 7 Polarization: -100.61 SS G_CDS: -4.76 Total: -105.37 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.19 Total: -31.42 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.88 Total: 47.22 kcal Atomic # 16 Polarization: 3.11 SS G_CDS: -1.22 Total: 1.89 kcal Total: -76.91 1.99 -74.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879992860.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.419 kcal (2) G-P(sol) polarization free energy of solvation -76.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds