Wall clock time and date at job start Mon Mar 30 2020 02:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00102 * 2 1 4 4 O 1.20827 * 119.99585 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00242 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.46959 * 60.00359 * 5 3 2 7 7 C 1.53000 * 109.47083 * 300.00144 * 5 3 2 8 8 C 1.50698 * 109.46984 * 174.99834 * 7 5 3 9 9 C 1.33637 * 126.03670 * 89.71959 * 8 7 5 10 10 N 1.31789 * 114.49853 * 179.78812 * 9 8 7 11 11 C 1.29029 * 117.12420 * 0.52022 * 10 9 8 12 12 S 1.70969 * 110.16710 * 359.71611 * 11 10 9 13 13 N 1.46901 * 109.47121 * 180.02562 * 5 3 2 14 14 C 1.46900 * 110.99890 * 274.99849 * 13 5 3 15 15 C 1.50698 * 109.47212 * 179.97438 * 14 13 5 16 16 H 1.07993 * 120.00429 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99807 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99969 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00386 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47257 * 89.99642 * 19 17 15 21 21 H 1.48500 * 109.47362 * 209.99940 * 19 17 15 22 22 H 1.48503 * 109.46975 * 329.99926 * 19 17 15 23 23 H 1.09000 * 109.47771 * 59.99189 * 1 2 3 24 24 H 1.08997 * 109.47195 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46796 * 299.99226 * 1 2 3 26 26 H 1.08990 * 109.47170 * 295.00011 * 7 5 3 27 27 H 1.09001 * 109.46952 * 55.00087 * 7 5 3 28 28 H 1.07999 * 122.74938 * 359.97248 * 9 8 7 29 29 H 1.07997 * 124.91090 * 179.75224 * 11 10 9 30 30 H 1.00901 * 111.00276 * 151.05135 * 13 5 3 31 31 H 1.09002 * 109.47391 * 300.00224 * 14 13 5 32 32 H 1.09005 * 109.47266 * 59.99895 * 14 13 5 33 33 H 0.97001 * 120.00175 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9556 0.7810 -0.8909 7 6 4.1138 0.5811 1.2483 8 6 5.6193 0.5517 1.1873 9 6 6.4438 1.4901 1.6621 10 7 7.7244 1.2302 1.4901 11 6 8.0255 0.1297 0.8876 12 16 6.6032 -0.7223 0.4706 13 7 3.9828 2.6836 0.0002 14 6 4.0168 3.2232 -1.3657 15 6 4.4467 4.6670 -1.3249 16 1 4.6725 5.1367 -0.3791 17 6 4.5518 5.3883 -2.4953 18 7 4.9264 6.6485 -2.4596 19 14 4.1606 4.5762 -4.1314 20 1 2.7196 4.7562 -4.4414 21 1 4.9790 5.2002 -5.2020 22 1 4.4724 3.1265 -4.0515 23 1 -0.3635 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 3.7968 1.1279 2.1362 27 1 3.7321 -0.4389 1.2941 28 1 6.0899 2.3865 2.1495 29 1 9.0307 -0.2049 0.6776 30 1 4.8759 2.7965 0.4558 31 1 4.7240 2.6500 -1.9654 32 1 3.0236 3.1526 -1.8092 33 1 5.0007 7.1559 -3.2830 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879992861.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:59 Heat of formation + Delta-G solvation = -31.157817 kcal Electronic energy + Delta-G solvation = -18496.154099 eV Core-core repulsion = 15456.448607 eV Total energy + Delta-G solvation = -3039.705492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.31553 -39.60194 -36.81336 -35.68581 -33.19119 -31.67146 -29.45503 -27.59511 -26.70439 -25.09785 -23.28634 -21.51056 -20.29897 -20.02563 -18.04614 -17.44579 -16.87439 -16.36958 -16.16485 -15.52546 -14.94373 -14.45831 -14.24061 -13.97274 -13.73244 -13.54554 -12.93167 -12.74976 -12.61038 -12.44793 -12.19184 -11.88258 -11.41382 -11.16752 -10.68153 -10.59000 -10.54754 -10.21393 -9.86018 -9.63832 -9.31243 -9.27131 -8.93480 -8.58904 -7.72266 -6.05269 -4.03111 0.65512 1.30980 1.70058 2.53850 2.77568 2.93296 3.29025 3.35404 3.36506 4.32867 4.41824 4.63578 4.72261 4.91802 5.13521 5.18369 5.21758 5.24501 5.27212 5.33414 5.36480 5.57618 5.78638 5.82856 6.16743 6.56211 6.65336 6.91583 7.47917 7.69840 7.72433 8.11335 8.14939 8.60157 9.01872 9.55643 11.07951 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.007828 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.157073 B = 3575.947938 C = 5224.094429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.370 6.370 3 C 0.457 3.543 4 O -0.467 6.467 5 C 0.100 3.900 6 H 0.076 0.924 7 C -0.038 4.038 8 C -0.219 4.219 9 C 0.043 3.957 10 N -0.464 5.464 11 C 0.017 3.983 12 S 0.115 5.885 13 N -0.657 5.657 14 C 0.166 3.834 15 C -0.512 4.512 16 H 0.081 0.919 17 C 0.071 3.929 18 N -0.898 5.898 19 Si 0.874 3.126 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.269 1.269 23 H 0.060 0.940 24 H 0.096 0.904 25 H 0.061 0.939 26 H 0.101 0.899 27 H 0.094 0.906 28 H 0.183 0.817 29 H 0.198 0.802 30 H 0.349 0.651 31 H -0.015 1.015 32 H 0.026 0.974 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.545 -19.586 6.514 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.287 6.287 3 C 0.296 3.704 4 O -0.349 6.349 5 C -0.013 4.013 6 H 0.094 0.906 7 C -0.079 4.079 8 C -0.340 4.340 9 C -0.107 4.107 10 N -0.177 5.177 11 C -0.281 4.281 12 S 0.367 5.633 13 N -0.293 5.293 14 C 0.039 3.961 15 C -0.551 4.551 16 H 0.099 0.901 17 C -0.131 4.131 18 N -0.536 5.536 19 Si 0.702 3.298 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.194 1.194 23 H 0.079 0.921 24 H 0.115 0.885 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.112 0.888 28 H 0.199 0.801 29 H 0.214 0.786 30 H 0.171 0.829 31 H 0.003 0.997 32 H 0.044 0.956 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.070 -19.445 6.204 20.439 hybrid contribution 0.132 0.176 -1.038 1.061 sum -0.937 -19.269 5.166 19.971 Atomic orbital electron populations 1.23176 0.76996 1.03076 1.02533 1.86479 1.22938 1.34283 1.85044 1.23855 0.91865 0.81225 0.73499 1.90703 1.66184 1.36017 1.42000 1.21005 0.87701 0.93818 0.98771 0.90644 1.20150 0.86854 1.02325 0.98540 1.25872 1.00816 0.99080 1.08191 1.21948 0.86500 1.00516 1.01784 1.66334 1.19254 1.16929 1.15151 1.28394 1.03574 0.94597 1.01497 1.83946 0.99955 1.24229 1.55179 1.60125 1.35960 1.10548 1.22678 1.20103 0.95785 0.96303 0.83959 1.20936 1.45276 0.93415 0.95436 0.90109 1.24857 0.94745 0.94708 0.98787 1.69890 1.47805 1.08051 1.27892 0.86873 0.78839 0.79977 0.84155 1.20065 1.21058 1.19373 0.92106 0.88520 0.92055 0.88058 0.88755 0.80060 0.78552 0.82859 0.99720 0.95570 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.18 10.37 -39.26 -0.41 -5.59 16 3 C 0.46 7.94 7.14 36.01 0.26 8.19 16 4 O -0.47 -9.96 15.67 -18.75 -0.29 -10.26 16 5 C 0.10 1.66 2.55 -68.86 -0.18 1.48 16 6 H 0.08 1.23 7.80 -51.93 -0.41 0.83 16 7 C -0.04 -0.48 5.31 -27.88 -0.15 -0.63 16 8 C -0.22 -2.79 5.47 -35.92 -0.20 -2.99 16 9 C 0.04 0.61 9.77 -19.18 -0.19 0.42 16 10 N -0.46 -6.71 10.54 -15.75 -0.17 -6.88 16 11 C 0.02 0.20 12.23 51.59 0.63 0.83 16 12 S 0.11 1.23 23.22 -107.50 -2.50 -1.27 16 13 N -0.66 -13.71 5.83 -109.22 -0.64 -14.34 16 14 C 0.17 4.15 4.20 -4.98 -0.02 4.13 16 15 C -0.51 -15.05 9.87 -34.44 -0.34 -15.39 16 16 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 17 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 18 N -0.90 -28.11 13.96 55.43 0.77 -27.34 16 19 Si 0.87 22.18 27.47 -169.99 -4.67 17.51 16 20 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 23 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 24 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 26 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.09 0.97 7.99 -51.93 -0.42 0.55 16 28 H 0.18 2.44 7.70 -52.49 -0.40 2.04 16 29 H 0.20 1.55 8.06 -52.49 -0.42 1.12 16 30 H 0.35 6.87 5.87 -39.29 -0.23 6.64 16 31 H -0.01 -0.37 7.12 -51.93 -0.37 -0.73 16 32 H 0.03 0.69 7.05 -51.93 -0.37 0.33 16 33 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 300.88 15.07 4.53 4.53 Total: -1.00 -35.11 300.88 -6.47 -41.57 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -3.89 Total: 2.52 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 0.79 Total: -0.46 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.03 Total: -48.56 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.70 Total: -15.85 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.67 Total: 17.51 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.50 Total: -1.27 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -35.11 -6.47 -41.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879992861.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.415 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds