Wall clock time and date at job start Mon Mar 30 2020 02:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34231 * 117.00102 * 2 1 4 4 O 1.20827 * 119.99585 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00242 * 180.02562 * 3 2 1 6 6 H 1.09002 * 109.46959 * 60.00359 * 5 3 2 7 7 C 1.53000 * 109.47083 * 300.00144 * 5 3 2 8 8 C 1.50698 * 109.46984 * 174.99834 * 7 5 3 9 9 C 1.33637 * 126.03670 * 89.71959 * 8 7 5 10 10 N 1.31789 * 114.49853 * 179.78812 * 9 8 7 11 11 C 1.29029 * 117.12420 * 0.52022 * 10 9 8 12 12 S 1.70969 * 110.16710 * 359.71611 * 11 10 9 13 13 N 1.46901 * 109.47121 * 180.02562 * 5 3 2 14 14 C 1.46900 * 110.99890 * 274.99849 * 13 5 3 15 15 C 1.50698 * 109.47212 * 179.97438 * 14 13 5 16 16 H 1.07993 * 120.00429 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99807 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99969 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 120.00386 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47257 * 89.99642 * 19 17 15 21 21 H 1.48500 * 109.47362 * 209.99940 * 19 17 15 22 22 H 1.48503 * 109.46975 * 329.99926 * 19 17 15 23 23 H 1.09000 * 109.47771 * 59.99189 * 1 2 3 24 24 H 1.08997 * 109.47195 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46796 * 299.99226 * 1 2 3 26 26 H 1.08990 * 109.47170 * 295.00011 * 7 5 3 27 27 H 1.09001 * 109.46952 * 55.00087 * 7 5 3 28 28 H 1.07999 * 122.74938 * 359.97248 * 9 8 7 29 29 H 1.07997 * 124.91090 * 179.75224 * 11 10 9 30 30 H 1.00901 * 111.00276 * 151.05135 * 13 5 3 31 31 H 1.09002 * 109.47391 * 300.00224 * 14 13 5 32 32 H 1.09005 * 109.47266 * 59.99895 * 14 13 5 33 33 H 0.97001 * 120.00175 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9556 0.7810 -0.8909 7 6 4.1138 0.5811 1.2483 8 6 5.6193 0.5517 1.1873 9 6 6.4438 1.4901 1.6621 10 7 7.7244 1.2302 1.4901 11 6 8.0255 0.1297 0.8876 12 16 6.6032 -0.7223 0.4706 13 7 3.9828 2.6836 0.0002 14 6 4.0168 3.2232 -1.3657 15 6 4.4467 4.6670 -1.3249 16 1 4.6725 5.1367 -0.3791 17 6 4.5518 5.3883 -2.4953 18 7 4.9264 6.6485 -2.4596 19 14 4.1606 4.5762 -4.1314 20 1 2.7196 4.7562 -4.4414 21 1 4.9790 5.2002 -5.2020 22 1 4.4724 3.1265 -4.0515 23 1 -0.3635 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5137 0.8901 26 1 3.7968 1.1279 2.1362 27 1 3.7321 -0.4389 1.2941 28 1 6.0899 2.3865 2.1495 29 1 9.0307 -0.2049 0.6776 30 1 4.8759 2.7965 0.4558 31 1 4.7240 2.6500 -1.9654 32 1 3.0236 3.1526 -1.8092 33 1 5.0007 7.1559 -3.2830 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879992861.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:58 Heat of formation + Delta-G solvation = -57.470575 kcal Electronic energy + Delta-G solvation = -18497.295106 eV Core-core repulsion = 15456.448607 eV Total energy + Delta-G solvation = -3040.846498 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.60188 -40.61383 -38.15676 -37.08358 -35.11346 -33.36835 -30.75137 -28.82920 -28.17799 -26.28180 -24.38261 -23.50903 -21.58918 -21.06456 -19.16812 -18.84909 -18.73070 -17.62653 -17.43655 -16.71218 -16.50447 -15.99718 -15.60214 -15.21379 -14.86253 -14.78946 -14.58323 -14.17373 -14.07973 -13.84337 -13.50391 -13.03238 -12.91170 -12.55891 -12.42946 -12.07245 -11.95198 -11.75854 -11.68932 -11.38729 -10.85821 -10.58389 -10.21402 -9.88904 -9.37829 -8.34214 -6.38618 -0.27761 0.42215 0.78145 1.21013 1.28251 1.30881 1.40351 1.62676 1.89871 2.28726 2.99225 3.25482 3.43458 3.68827 3.74773 3.99542 4.17926 4.22440 4.35875 4.36875 4.42127 4.62516 4.73275 4.78674 4.80905 4.94158 5.17371 5.33130 5.45624 5.76115 6.39797 6.45735 6.67565 6.76903 6.85099 7.24917 8.82571 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.012019 B = 0.007828 C = 0.005358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.157073 B = 3575.947938 C = 5224.094429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.358 6.358 3 C 0.463 3.537 4 O -0.516 6.516 5 C 0.098 3.902 6 H 0.086 0.914 7 C -0.027 4.027 8 C -0.234 4.234 9 C 0.025 3.975 10 N -0.505 5.505 11 C 0.015 3.985 12 S 0.173 5.827 13 N -0.671 5.671 14 C 0.181 3.819 15 C -0.526 4.526 16 H 0.039 0.961 17 C 0.010 3.990 18 N -0.943 5.943 19 Si 0.945 3.055 20 H -0.271 1.271 21 H -0.274 1.274 22 H -0.248 1.248 23 H 0.052 0.948 24 H 0.140 0.860 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.125 0.875 28 H 0.172 0.828 29 H 0.229 0.771 30 H 0.353 0.647 31 H -0.007 1.007 32 H 0.015 0.985 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.761 -23.044 5.511 23.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.274 6.274 3 C 0.304 3.696 4 O -0.402 6.402 5 C -0.015 4.015 6 H 0.104 0.896 7 C -0.067 4.067 8 C -0.355 4.355 9 C -0.126 4.126 10 N -0.218 5.218 11 C -0.282 4.282 12 S 0.426 5.574 13 N -0.307 5.307 14 C 0.053 3.947 15 C -0.564 4.564 16 H 0.057 0.943 17 C -0.187 4.187 18 N -0.584 5.584 19 Si 0.768 3.232 20 H -0.196 1.196 21 H -0.199 1.199 22 H -0.171 1.171 23 H 0.071 0.929 24 H 0.158 0.842 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.143 0.857 28 H 0.189 0.811 29 H 0.246 0.754 30 H 0.176 0.824 31 H 0.010 0.990 32 H 0.033 0.967 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.283 -22.960 5.221 23.581 hybrid contribution 0.193 1.187 -0.639 1.361 sum -1.089 -21.774 4.583 22.277 Atomic orbital electron populations 1.23546 0.74975 1.05815 1.02199 1.86462 1.24772 1.32063 1.84119 1.23957 0.92082 0.81422 0.72139 1.90693 1.67205 1.37770 1.44579 1.21126 0.87611 0.91475 1.01275 0.89622 1.20109 0.86690 1.03440 0.96458 1.25941 1.01008 0.99961 1.08591 1.21955 0.87066 1.00907 1.02684 1.66344 1.19592 1.18789 1.17125 1.29006 1.05577 0.93744 0.99879 1.83696 0.98189 1.22078 1.53477 1.59902 1.36514 1.13986 1.20329 1.19754 0.94747 0.93852 0.86366 1.21221 1.45319 0.95874 0.94016 0.94308 1.25832 0.94407 0.95268 1.03235 1.70042 1.49142 1.09859 1.29329 0.85756 0.78771 0.79980 0.78730 1.19611 1.19921 1.17140 0.92930 0.84174 0.92061 0.87871 0.85690 0.81097 0.75437 0.82387 0.98985 0.96682 0.92257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.73 16 2 O -0.36 -9.06 10.37 -51.42 -0.53 -9.59 16 3 C 0.46 15.46 7.14 71.24 0.51 15.97 16 4 O -0.52 -22.03 15.67 21.96 0.34 -21.69 16 5 C 0.10 3.09 2.55 44.17 0.11 3.20 16 6 H 0.09 2.58 7.80 -2.39 -0.02 2.56 16 7 C -0.03 -0.62 5.31 29.85 0.16 -0.46 16 8 C -0.23 -5.57 5.47 24.64 0.13 -5.44 16 9 C 0.02 0.70 9.77 83.65 0.82 1.52 16 10 N -0.50 -14.31 10.54 -203.75 -2.15 -16.46 16 11 C 0.01 0.30 12.23 130.65 1.60 1.90 16 12 S 0.17 3.17 23.22 -56.49 -1.31 1.86 16 13 N -0.67 -28.17 5.83 -499.45 -2.91 -31.08 16 14 C 0.18 9.08 4.20 85.56 0.36 9.44 16 15 C -0.53 -31.86 9.87 25.60 0.25 -31.60 16 16 H 0.04 2.59 8.06 -2.91 -0.02 2.57 16 17 C 0.01 0.63 5.47 84.65 0.46 1.10 16 18 N -0.94 -60.66 13.96 21.45 0.30 -60.36 16 19 Si 0.94 45.57 27.47 68.60 1.88 47.45 16 20 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 23 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 24 H 0.14 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 26 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.12 2.10 7.99 -2.39 -0.02 2.08 16 28 H 0.17 4.89 7.70 -2.91 -0.02 4.87 16 29 H 0.23 2.90 8.06 -2.91 -0.02 2.88 16 30 H 0.35 14.21 5.87 -89.69 -0.53 13.68 16 31 H -0.01 -0.36 7.12 -2.39 -0.02 -0.37 16 32 H 0.02 0.79 7.05 -2.38 -0.02 0.78 16 33 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -78.38 300.88 1.77 -76.60 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.55 Total: 15.91 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: 5.60 Total: -2.65 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -4.76 Total: -107.90 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.19 Total: -31.28 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.45 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -1.31 Total: 1.86 kcal Total: -78.38 1.77 -76.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879992861.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.132 kcal (2) G-P(sol) polarization free energy of solvation -78.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds