Wall clock time and date at job start Mon Mar 30 2020 01:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.47199 * 109.51139 * 2 1 4 4 N 2.60798 * 109.51198 * 359.97438 * 2 1 3 5 5 C 1.53297 * 109.50926 * 239.89999 * 2 1 3 6 6 N 1.47158 * 108.38155 * 187.77278 * 5 2 1 7 7 C 1.34770 * 120.97950 * 230.51021 * 6 5 2 8 8 O 1.21284 * 120.00294 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.00005 * 180.02562 * 7 6 5 10 10 S 1.81004 * 109.47234 * 180.02562 * 9 7 6 11 11 C 1.76194 * 99.99738 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00441 * 0.02562 * 11 10 9 13 13 C 1.38798 * 120.00052 * 179.97438 * 11 10 9 14 14 N 1.31634 * 119.99969 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00388 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46986 * 270.00119 * 15 13 11 17 17 H 1.48496 * 109.47029 * 30.00135 * 15 13 11 18 18 H 1.48499 * 109.47352 * 149.99965 * 15 13 11 19 19 C 1.47150 * 118.03647 * 50.78869 * 6 5 2 20 20 C 1.53716 * 108.15941 * 309.15878 * 19 6 5 21 21 O 1.42958 * 109.15159 * 52.53437 * 20 19 6 22 22 H 1.09007 * 109.47285 * 180.10314 * 1 2 3 23 23 H 1.09001 * 109.46723 * 300.09594 * 1 2 3 24 24 H 1.09000 * 109.47565 * 60.10069 * 1 2 3 25 25 H 1.08999 * 109.68221 * 68.04955 * 5 2 1 26 26 H 1.08999 * 109.68349 * 307.49594 * 5 2 1 27 27 H 1.09000 * 109.47145 * 60.00045 * 9 7 6 28 28 H 1.09001 * 109.46839 * 299.99770 * 9 7 6 29 29 H 0.97005 * 119.99723 * 0.02562 * 14 13 11 30 30 H 1.08994 * 109.68330 * 68.93446 * 19 6 5 31 31 H 1.08992 * 109.67998 * 189.48835 * 19 6 5 32 32 H 1.09006 * 109.65366 * 292.57115 * 20 19 6 33 33 H 1.08997 * 109.48523 * 172.40252 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0216 1.3875 0.0000 4 7 2.4011 2.4582 -0.0011 5 6 2.0420 -0.7247 -1.2501 6 7 3.5012 -0.8757 -1.1340 7 6 4.3192 -0.5033 -2.1383 8 8 3.8553 -0.0353 -3.1565 9 6 5.8104 -0.6683 -1.9960 10 16 6.6286 -0.0813 -3.5001 11 6 8.3107 -0.3820 -3.0704 12 1 8.5544 -0.8106 -2.1096 13 6 9.3227 -0.0689 -3.9673 14 7 9.0257 0.4522 -5.1391 15 14 11.1061 -0.3882 -3.5122 16 1 11.6683 0.8117 -2.8419 17 1 11.1813 -1.5507 -2.5912 18 1 11.8862 -0.6796 -4.7417 19 6 4.0403 -1.4511 0.1084 20 6 3.4312 -0.6861 1.2944 21 8 2.0075 -0.6768 1.1651 22 1 -0.3634 -1.0277 0.0019 23 1 -0.3633 0.5153 0.8892 24 1 -0.3634 0.5123 -0.8909 25 1 1.8029 -0.1389 -2.1377 26 1 1.5757 -1.7073 -1.3216 27 1 6.0462 -1.7212 -1.8410 28 1 6.1603 -0.0880 -1.1423 29 1 8.0996 0.6177 -5.3756 30 1 3.7718 -2.5056 0.1713 31 1 5.1251 -1.3466 0.1207 32 1 3.8030 0.3386 1.2995 33 1 3.7091 -1.1788 2.2261 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887671395.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:31 Heat of formation + Delta-G solvation = -74.072438 kcal Electronic energy + Delta-G solvation = -18432.277882 eV Core-core repulsion = 15390.711473 eV Total energy + Delta-G solvation = -3041.566409 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.82195 -39.93524 -37.48869 -36.07529 -34.77947 -34.40325 -31.38472 -29.91355 -27.49091 -26.87969 -24.81528 -24.18339 -21.10078 -20.23140 -19.19036 -18.44256 -17.89059 -17.13355 -16.75432 -16.30734 -16.16721 -15.72984 -15.35133 -15.19979 -14.96503 -14.64183 -14.53929 -14.03337 -13.99528 -13.68628 -13.55040 -13.20481 -13.08785 -12.79379 -12.76911 -12.73826 -11.99558 -11.95044 -11.63802 -11.58401 -11.13496 -11.07128 -10.36422 -9.83870 -8.95619 -8.92398 -6.31779 1.05492 1.26679 1.36823 1.46816 1.49726 1.59848 1.77294 1.82770 2.30619 2.46162 2.60373 2.99901 3.02797 3.31289 3.47034 3.76872 3.84225 3.99382 4.07997 4.17910 4.25391 4.33994 4.57086 4.63818 4.76886 4.80373 4.83439 5.18167 5.26520 5.60989 5.74152 5.98626 6.11410 6.21889 6.88696 7.03311 8.47760 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.034985 B = 0.004395 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.140629 B = 6369.104262 C = 6597.236327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.210 3.790 3 C 0.196 3.804 4 N -0.460 5.460 5 C 0.090 3.910 6 N -0.617 5.617 7 C 0.534 3.466 8 O -0.560 6.560 9 C -0.105 4.105 10 S -0.199 6.199 11 C -0.612 4.612 12 H 0.077 0.923 13 C -0.018 4.018 14 N -0.913 5.913 15 Si 1.139 2.861 16 H -0.270 1.270 17 H -0.259 1.259 18 H -0.279 1.279 19 C 0.066 3.934 20 C 0.040 3.960 21 O -0.342 6.342 22 H 0.119 0.881 23 H 0.082 0.918 24 H 0.091 0.909 25 H 0.090 0.910 26 H 0.139 0.861 27 H 0.119 0.881 28 H 0.103 0.897 29 H 0.260 0.740 30 H 0.121 0.879 31 H 0.101 0.899 32 H 0.034 0.966 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.245 -8.919 17.001 25.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 C -0.123 4.123 4 N -0.138 5.138 5 C -0.033 4.033 6 N -0.352 5.352 7 C 0.322 3.678 8 O -0.437 6.437 9 C -0.256 4.256 10 S 0.028 5.972 11 C -0.760 4.760 12 H 0.095 0.905 13 C -0.222 4.222 14 N -0.549 5.549 15 Si 0.957 3.043 16 H -0.195 1.195 17 H -0.183 1.183 18 H -0.204 1.204 19 C -0.056 4.056 20 C -0.037 4.037 21 O -0.259 6.259 22 H 0.137 0.863 23 H 0.101 0.899 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.157 0.843 27 H 0.137 0.863 28 H 0.122 0.878 29 H 0.071 0.929 30 H 0.139 0.861 31 H 0.119 0.881 32 H 0.052 0.948 33 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.974 -6.602 15.107 22.272 hybrid contribution -0.686 -0.334 1.129 1.363 sum -15.660 -6.935 16.236 23.600 Atomic orbital electron populations 1.21904 0.85189 1.07116 1.04886 1.19780 0.98272 0.77503 0.87922 1.30679 0.92689 0.96268 0.92628 1.81218 1.09277 1.14926 1.08395 1.22576 0.79391 1.04043 0.97271 1.48185 1.06835 1.63215 1.16992 1.20102 0.88204 0.76593 0.82904 1.90693 1.77351 1.45291 1.30402 1.23224 0.93949 1.06326 1.02128 1.85117 1.05030 1.84138 1.22889 1.24038 0.91444 1.52432 1.08062 0.90498 1.27858 1.10107 0.92112 0.92074 1.70898 1.21440 1.40393 1.22127 0.82689 0.67617 0.77786 0.76236 1.19529 1.18313 1.20396 1.22929 1.00859 1.00166 0.81660 1.23382 0.80023 0.99850 1.00399 1.88156 1.22020 1.74072 1.41607 0.86262 0.89897 0.89019 0.89128 0.84336 0.86335 0.87840 0.92916 0.86136 0.88072 0.94758 0.82627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 8.81 71.98 0.63 -0.48 16 2 C 0.21 3.41 1.05 -12.50 -0.01 3.40 16 3 C 0.20 5.06 12.36 89.44 1.11 6.16 16 4 N -0.46 -15.26 18.54 20.01 0.37 -14.89 16 5 C 0.09 1.69 5.28 86.35 0.46 2.15 16 6 N -0.62 -15.11 2.76 -816.54 -2.25 -17.37 16 7 C 0.53 19.60 7.73 87.66 0.68 20.27 16 8 O -0.56 -25.63 15.33 -3.04 -0.05 -25.68 16 9 C -0.11 -4.15 4.53 71.24 0.32 -3.83 16 10 S -0.20 -11.02 19.60 -56.49 -1.11 -12.13 16 11 C -0.61 -35.27 9.50 67.95 0.65 -34.62 16 12 H 0.08 4.12 7.80 -2.91 -0.02 4.10 16 13 C -0.02 -1.07 5.49 84.86 0.47 -0.60 16 14 N -0.91 -58.38 13.67 21.65 0.30 -58.09 16 15 Si 1.14 49.22 29.92 68.60 2.05 51.27 16 16 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 17 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 18 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 19 C 0.07 1.03 6.57 86.50 0.57 1.60 16 20 C 0.04 0.56 6.71 72.22 0.48 1.05 16 21 O -0.34 -4.94 10.21 -148.98 -1.52 -6.46 16 22 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 23 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.09 2.13 7.07 -2.39 -0.02 2.12 16 26 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.12 4.10 8.01 -2.39 -0.02 4.08 16 28 H 0.10 3.82 7.67 -2.40 -0.02 3.80 16 29 H 0.26 17.33 7.12 -92.70 -0.66 16.67 16 30 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.10 1.65 6.05 -2.39 -0.01 1.63 16 32 H 0.03 0.67 7.02 -2.38 -0.02 0.65 16 33 H 0.16 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -84.91 298.95 4.37 -80.54 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 1.24 Total: 7.71 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 5.35 Total: -4.91 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -1.59 Total: -90.34 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.57 Total: -32.14 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.05 Total: 51.27 kcal Atomic # 16 Polarization: -11.02 SS G_CDS: -1.11 Total: -12.13 kcal Total: -84.91 4.37 -80.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887671395.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.468 kcal (2) G-P(sol) polarization free energy of solvation -84.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds