Wall clock time and date at job start Mon Mar 30 2020 01:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.47203 * 109.55251 * 2 1 4 4 N 2.60800 * 109.55229 * 359.97438 * 2 1 3 5 5 C 1.53295 * 109.51254 * 120.12854 * 2 1 3 6 6 N 1.47155 * 108.37983 * 172.22755 * 5 2 1 7 7 C 1.34779 * 120.98301 * 129.44663 * 6 5 2 8 8 O 1.21284 * 119.99786 * 359.97438 * 7 6 5 9 9 C 1.50699 * 120.00259 * 179.97438 * 7 6 5 10 10 S 1.80997 * 109.47105 * 179.97438 * 9 7 6 11 11 C 1.76204 * 99.99666 * 180.02562 * 10 9 7 12 12 H 1.07994 * 120.00024 * 359.97438 * 11 10 9 13 13 C 1.38800 * 119.99661 * 180.02562 * 11 10 9 14 14 N 1.31629 * 120.00097 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00013 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47132 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47306 * 119.99861 * 15 13 11 18 18 H 1.48503 * 109.47155 * 240.00208 * 15 13 11 19 19 C 1.47157 * 118.03509 * 309.45990 * 6 5 2 20 20 C 1.53289 * 108.38491 * 50.54082 * 19 6 5 21 21 O 1.42962 * 109.22360 * 307.69791 * 20 19 6 22 22 H 1.09007 * 109.47253 * 180.12341 * 1 2 3 23 23 H 1.09003 * 109.47352 * 300.12121 * 1 2 3 24 24 H 1.09000 * 109.47444 * 60.12868 * 1 2 3 25 25 H 1.08993 * 109.67897 * 291.94482 * 5 2 1 26 26 H 1.08996 * 109.68262 * 52.50682 * 5 2 1 27 27 H 1.09001 * 109.47238 * 299.99961 * 9 7 6 28 28 H 1.09002 * 109.47151 * 59.99606 * 9 7 6 29 29 H 0.96997 * 120.00006 * 180.02562 * 14 13 11 30 30 H 1.08997 * 109.67701 * 170.26396 * 19 6 5 31 31 H 1.09000 * 109.68081 * 290.81484 * 19 6 5 32 32 H 1.08994 * 109.51313 * 187.77065 * 20 19 6 33 33 H 1.09001 * 109.51407 * 67.61512 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0226 1.3871 0.0000 4 7 2.4028 2.4576 -0.0011 5 6 2.0420 -0.7253 1.2497 6 7 3.5012 -0.8762 1.1335 7 6 4.3194 -0.5034 2.1375 8 8 3.8556 -0.0352 3.1556 9 6 5.8105 -0.6684 1.9951 10 16 6.6289 -0.0809 3.4988 11 6 8.3111 -0.3815 3.0689 12 1 8.5545 -0.8103 2.1082 13 6 9.3231 -0.0680 3.9656 14 7 9.0263 0.4542 5.1369 15 14 11.1065 -0.3860 3.5098 16 1 11.1720 -0.9735 2.1475 17 1 11.8594 0.8937 3.5341 18 1 11.7058 -1.3316 4.4854 19 6 4.0406 -1.4458 -0.1116 20 6 3.4312 -0.6855 -1.2949 21 8 2.0075 -0.6763 -1.1656 22 1 -0.3634 -1.0277 0.0022 23 1 -0.3634 0.5157 0.8889 24 1 -0.3634 0.5118 -0.8911 25 1 1.8031 -0.1399 2.1375 26 1 1.5758 -1.7079 1.3207 27 1 6.0465 -1.7212 1.8402 28 1 6.1604 -0.0882 1.1411 29 1 9.7335 0.6736 5.7633 30 1 5.1251 -1.3376 -0.1250 31 1 3.7756 -2.5010 -0.1775 32 1 3.7090 -1.1786 -2.2264 33 1 3.8028 0.3392 -1.2996 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887671396.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:34 Heat of formation + Delta-G solvation = -68.238613 kcal Electronic energy + Delta-G solvation = -18400.816730 eV Core-core repulsion = 15359.503295 eV Total energy + Delta-G solvation = -3041.313436 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.76019 -39.85535 -37.44725 -36.00018 -34.61467 -34.36882 -31.24942 -29.88558 -27.81653 -27.06956 -24.76791 -24.12512 -20.97883 -19.67507 -19.14081 -18.31262 -17.73750 -16.96671 -16.90444 -16.53247 -16.20172 -15.87259 -15.29745 -15.13079 -14.80593 -14.59632 -14.51963 -13.97047 -13.59159 -13.51165 -13.20402 -13.15602 -13.09939 -12.93668 -12.75009 -12.70400 -12.59238 -11.94245 -11.73591 -11.57824 -11.18509 -10.96773 -10.31064 -9.77093 -8.71745 -8.37572 -6.16661 1.16793 1.31346 1.40023 1.42858 1.45333 1.51850 1.54849 1.92776 2.24070 2.50033 2.64410 2.97124 3.17855 3.37762 3.60537 3.84222 3.88938 4.06760 4.18966 4.24203 4.36405 4.42039 4.62078 4.67360 4.81295 4.84367 4.86330 5.23361 5.31646 5.39196 5.78011 6.07321 6.17268 6.25824 6.99159 7.03860 8.72076 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.035077 B = 0.004377 C = 0.004228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.050440 B = 6395.840683 C = 6621.701204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.209 3.791 3 C 0.197 3.803 4 N -0.460 5.460 5 C 0.090 3.910 6 N -0.619 5.619 7 C 0.535 3.465 8 O -0.560 6.560 9 C -0.125 4.125 10 S -0.154 6.154 11 C -0.545 4.545 12 H 0.084 0.916 13 C 0.014 3.986 14 N -0.912 5.912 15 Si 1.000 3.000 16 H -0.255 1.255 17 H -0.276 1.276 18 H -0.272 1.272 19 C 0.066 3.934 20 C 0.040 3.960 21 O -0.343 6.343 22 H 0.118 0.882 23 H 0.091 0.909 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.138 0.862 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.271 0.729 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.156 0.844 33 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.638 -8.640 -16.227 24.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 C -0.122 4.122 4 N -0.138 5.138 5 C -0.033 4.033 6 N -0.354 5.354 7 C 0.323 3.677 8 O -0.437 6.437 9 C -0.276 4.276 10 S 0.073 5.927 11 C -0.693 4.693 12 H 0.103 0.897 13 C -0.191 4.191 14 N -0.549 5.549 15 Si 0.821 3.179 16 H -0.178 1.178 17 H -0.201 1.201 18 H -0.197 1.197 19 C -0.056 4.056 20 C -0.037 4.037 21 O -0.259 6.259 22 H 0.137 0.863 23 H 0.110 0.890 24 H 0.101 0.899 25 H 0.109 0.891 26 H 0.155 0.845 27 H 0.135 0.865 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.120 0.880 31 H 0.137 0.863 32 H 0.173 0.827 33 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -15.819 -6.389 -14.730 22.540 hybrid contribution 1.889 -0.338 -0.690 2.039 sum -13.930 -6.727 -15.420 21.843 Atomic orbital electron populations 1.21898 0.85249 1.07074 1.04855 1.19783 0.98228 0.77534 0.87965 1.30672 0.92691 0.96257 0.92618 1.81212 1.09271 1.14925 1.08411 1.22552 0.79587 1.03936 0.97214 1.48203 1.06756 1.63523 1.16937 1.20157 0.88327 0.76416 0.82787 1.90690 1.77407 1.45210 1.30429 1.23368 0.94080 1.06367 1.03779 1.85636 1.03659 1.83310 1.20118 1.23220 0.91352 1.48878 1.05802 0.89743 1.26145 1.04909 0.93903 0.94160 1.70191 1.35164 1.41250 1.08246 0.84891 0.75787 0.78161 0.79026 1.17809 1.20147 1.19742 1.22821 1.00909 1.00176 0.81673 1.23308 0.80026 0.99896 1.00445 1.88153 1.22050 1.74137 1.41603 0.86305 0.89032 0.89932 0.89147 0.84455 0.86523 0.88046 0.91972 0.87995 0.86300 0.82683 0.94793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 8.81 71.98 0.63 -0.53 16 2 C 0.21 3.49 1.05 -12.50 -0.01 3.48 16 3 C 0.20 5.14 12.36 89.44 1.11 6.24 16 4 N -0.46 -15.40 18.54 20.01 0.37 -15.03 16 5 C 0.09 1.74 5.29 86.35 0.46 2.19 16 6 N -0.62 -15.44 2.76 -817.36 -2.26 -17.70 16 7 C 0.54 19.87 7.73 87.66 0.68 20.54 16 8 O -0.56 -25.97 15.33 -3.04 -0.05 -26.01 16 9 C -0.12 -4.96 4.53 71.24 0.32 -4.64 16 10 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 11 C -0.54 -31.08 9.50 67.95 0.65 -30.44 16 12 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 13 C 0.01 0.77 5.49 84.86 0.47 1.24 16 14 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 15 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 16 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 17 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 18 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 19 C 0.07 1.06 6.54 86.35 0.56 1.63 16 20 C 0.04 0.57 6.69 72.08 0.48 1.06 16 21 O -0.34 -5.09 10.21 -148.98 -1.52 -6.61 16 22 H 0.12 0.40 8.14 -2.38 -0.02 0.38 16 23 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.09 2.17 7.06 -2.39 -0.02 2.16 16 26 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.12 4.03 8.02 -2.39 -0.02 4.01 16 28 H 0.10 3.74 7.66 -2.39 -0.02 3.72 16 29 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 30 H 0.10 1.69 6.05 -2.39 -0.01 1.68 16 31 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.16 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.03 0.67 7.02 -2.39 -0.02 0.66 16 Total: -1.00 -83.39 300.26 4.16 -79.23 By element: Atomic # 1 Polarization: 4.55 SS G_CDS: 1.13 Total: 5.68 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: 5.34 Total: 0.77 kcal Atomic # 7 Polarization: -87.17 SS G_CDS: -1.60 Total: -88.77 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -1.57 Total: -32.62 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.66 SS G_CDS: -1.16 Total: -9.82 kcal Total: -83.39 4.16 -79.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887671396.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.989 kcal (2) G-P(sol) polarization free energy of solvation -83.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds