Wall clock time and date at job start Mon Mar 30 2020 01:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45191 * 109.47555 * 2 1 4 4 C 1.34823 * 117.00188 * 179.97438 * 3 2 1 5 5 O 1.21540 * 119.99945 * 0.02562 * 4 3 2 6 6 C 1.47103 * 120.00012 * 179.97438 * 4 3 2 7 7 N 1.30603 * 125.54323 * 359.97438 * 6 4 3 8 8 C 1.30646 * 115.91160 * 180.02562 * 7 6 4 9 9 C 1.34300 * 115.78384 * 359.97438 * 8 7 6 10 10 C 1.50697 * 125.45613 * 179.97438 * 9 8 7 11 11 N 1.46905 * 109.47066 * 90.00040 * 10 9 8 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00023 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99532 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00003 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47043 * 89.99858 * 17 15 13 19 19 H 1.48494 * 109.47326 * 209.99769 * 17 15 13 20 20 H 1.48497 * 109.47436 * 330.00047 * 17 15 13 21 21 S 1.71069 * 109.08556 * 0.22796 * 9 8 7 22 22 H 1.09000 * 109.46759 * 299.99624 * 1 2 3 23 23 H 1.08997 * 109.47224 * 59.98954 * 1 2 3 24 24 H 1.08994 * 109.47463 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46923 * 239.99847 * 2 1 3 26 26 H 1.09000 * 109.46912 * 120.00645 * 2 1 3 27 27 H 1.08000 * 122.10948 * 180.02562 * 8 7 6 28 28 H 1.09001 * 109.47558 * 330.00204 * 10 9 8 29 29 H 1.08998 * 109.47216 * 209.99866 * 10 9 8 30 30 H 1.00901 * 110.99869 * 56.04737 * 11 10 9 31 31 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 32 32 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 33 33 H 0.97001 * 119.99132 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3507 1.5454 0.0005 5 8 4.0910 0.5815 0.0005 6 6 3.9130 2.9047 0.0000 7 7 3.2212 4.0125 -0.0015 8 6 3.9156 5.1192 -0.0022 9 6 5.2504 4.9713 -0.0008 10 6 6.2544 6.0951 -0.0019 11 7 6.5795 6.4626 1.3828 12 6 7.5574 7.5582 1.4210 13 6 7.8659 7.9063 2.8543 14 1 7.3836 7.3679 3.6567 15 6 8.7634 8.9130 3.1415 16 7 9.3504 9.5689 2.1643 17 14 9.1453 9.3450 4.9182 18 1 10.2913 8.5274 5.3910 19 1 9.4923 10.7857 5.0137 20 1 7.9561 9.0652 5.7623 21 16 5.6284 3.3029 -0.0049 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.4458 6.0917 -0.0030 28 1 5.8333 6.9582 -0.5175 29 1 7.1606 5.7723 -0.5144 30 1 6.9116 5.6628 1.9007 31 1 8.4727 7.2459 0.9182 32 1 7.1448 8.4312 0.9153 33 1 9.9820 10.2769 2.3664 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894082576.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:54 Heat of formation + Delta-G solvation = -42.410535 kcal Electronic energy + Delta-G solvation = -17174.008500 eV Core-core repulsion = 14133.815054 eV Total energy + Delta-G solvation = -3040.193446 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.66107 -39.56772 -36.84901 -35.75500 -32.85052 -32.08178 -30.80983 -27.97790 -26.15107 -23.90327 -23.44905 -22.25507 -21.56473 -20.25869 -18.19282 -17.48059 -16.87964 -16.75849 -16.33613 -15.03230 -14.94791 -14.64492 -14.42916 -13.98768 -13.75607 -13.50485 -13.22510 -13.08436 -12.24068 -12.21010 -12.03396 -11.90583 -11.40406 -11.22014 -11.06896 -10.81878 -10.81081 -10.78089 -10.13831 -9.98026 -9.56437 -9.31930 -8.94103 -8.57459 -7.56055 -6.12149 -4.14763 0.03601 0.85555 1.57823 1.99555 2.52732 2.95492 3.27576 3.34026 3.38675 3.98444 4.36359 4.62338 4.65071 4.80384 4.88031 4.95108 5.11089 5.24101 5.31722 5.36327 5.46778 5.65683 5.84908 5.88152 6.03065 6.08350 7.02268 7.22165 7.24067 7.58521 7.64227 7.97874 8.14339 8.40201 8.93345 9.50672 10.98833 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.039706 B = 0.003081 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.013490 B = 9086.677537 C = 9236.851520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.332 6.332 4 C 0.560 3.440 5 O -0.500 6.500 6 C -0.046 4.046 7 N -0.390 5.390 8 C 0.029 3.971 9 C -0.197 4.197 10 C 0.126 3.874 11 N -0.682 5.682 12 C 0.194 3.806 13 C -0.517 4.517 14 H 0.063 0.937 15 C 0.057 3.943 16 N -0.897 5.897 17 Si 0.901 3.099 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.272 1.272 21 S 0.262 5.738 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.185 0.815 28 H 0.095 0.905 29 H 0.040 0.960 30 H 0.331 0.669 31 H -0.010 1.010 32 H 0.033 0.967 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.945 -16.312 -6.912 21.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.247 6.247 4 C 0.401 3.599 5 O -0.387 6.387 6 C -0.316 4.316 7 N -0.109 5.109 8 C -0.129 4.129 9 C -0.321 4.321 10 C -0.006 4.006 11 N -0.313 5.313 12 C 0.068 3.932 13 C -0.556 4.556 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.729 3.271 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.197 1.197 21 S 0.517 5.483 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.099 0.901 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.201 0.799 28 H 0.113 0.887 29 H 0.058 0.942 30 H 0.148 0.852 31 H 0.008 0.992 32 H 0.051 0.949 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.830 -16.747 -6.892 22.194 hybrid contribution 0.654 0.699 0.681 1.175 sum -12.176 -16.047 -6.210 21.079 Atomic orbital electron populations 1.21806 0.92264 1.02983 1.03890 1.23152 0.95661 0.79673 1.02862 1.86686 1.22255 1.32344 1.83440 1.19374 0.81248 0.86582 0.72706 1.90909 1.60592 1.40860 1.46386 1.26043 0.94096 0.94643 1.16818 1.66826 1.37691 0.97188 1.09153 1.21711 0.89364 0.97765 1.04016 1.26258 1.00419 1.00404 1.04988 1.20448 0.93401 0.92649 0.94116 1.60813 1.50020 1.12399 1.08114 1.19624 0.87499 0.88252 0.97828 1.21131 1.24162 1.18401 0.91908 0.91844 1.24986 0.95798 0.95984 0.97710 1.69955 1.28803 1.23341 1.31484 0.86447 0.78669 0.77538 0.84484 1.20651 1.21160 1.19702 1.83996 1.04777 0.97415 1.62133 0.91239 0.91297 0.90073 0.90935 0.90878 0.79861 0.88700 0.94213 0.85210 0.99188 0.94935 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.29 37.16 0.38 -0.58 16 2 C 0.06 0.54 6.20 37.16 0.23 0.77 16 3 O -0.33 -4.17 10.21 -40.83 -0.42 -4.59 16 4 C 0.56 7.83 7.95 34.33 0.27 8.10 16 5 O -0.50 -7.46 16.73 -19.29 -0.32 -7.78 16 6 C -0.05 -0.66 7.47 -14.48 -0.11 -0.77 16 7 N -0.39 -5.85 10.62 -11.54 -0.12 -5.97 16 8 C 0.03 0.41 11.13 -19.45 -0.22 0.20 16 9 C -0.20 -2.81 5.89 -35.70 -0.21 -3.02 16 10 C 0.13 2.00 6.17 -4.97 -0.03 1.97 16 11 N -0.68 -13.71 6.48 -116.34 -0.75 -14.46 16 12 C 0.19 4.82 5.44 -4.98 -0.03 4.79 16 13 C -0.52 -14.22 9.32 -34.44 -0.32 -14.54 16 14 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 17 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 21 S 0.26 3.45 23.00 -107.50 -2.47 0.98 16 22 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 23 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.18 2.31 8.06 -52.49 -0.42 1.89 16 28 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.33 6.45 8.72 -39.29 -0.34 6.11 16 31 H -0.01 -0.25 8.14 -51.93 -0.42 -0.68 16 32 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 312.66 15.07 4.71 4.71 Total: -1.00 -30.75 312.66 -7.90 -38.65 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -4.11 Total: -0.88 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: -0.12 Total: -1.59 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.14 Total: -45.77 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: -0.74 Total: -12.37 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -2.47 Total: 0.98 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.75 -7.90 -38.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894082576.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.758 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds