Wall clock time and date at job start Mon Mar 30 2020 01:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45191 * 109.47555 * 2 1 4 4 C 1.34823 * 117.00188 * 179.97438 * 3 2 1 5 5 O 1.21540 * 119.99945 * 0.02562 * 4 3 2 6 6 C 1.47103 * 120.00012 * 179.97438 * 4 3 2 7 7 N 1.30603 * 125.54323 * 359.97438 * 6 4 3 8 8 C 1.30646 * 115.91160 * 180.02562 * 7 6 4 9 9 C 1.34300 * 115.78384 * 359.97438 * 8 7 6 10 10 C 1.50697 * 125.45613 * 179.97438 * 9 8 7 11 11 N 1.46905 * 109.47066 * 90.00040 * 10 9 8 12 12 C 1.46901 * 110.99870 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.46943 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00162 * 359.97438 * 13 12 11 15 15 C 1.37883 * 120.00023 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99532 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 120.00003 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.47043 * 89.99858 * 17 15 13 19 19 H 1.48494 * 109.47326 * 209.99769 * 17 15 13 20 20 H 1.48497 * 109.47436 * 330.00047 * 17 15 13 21 21 S 1.71069 * 109.08556 * 0.22796 * 9 8 7 22 22 H 1.09000 * 109.46759 * 299.99624 * 1 2 3 23 23 H 1.08997 * 109.47224 * 59.98954 * 1 2 3 24 24 H 1.08994 * 109.47463 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46923 * 239.99847 * 2 1 3 26 26 H 1.09000 * 109.46912 * 120.00645 * 2 1 3 27 27 H 1.08000 * 122.10948 * 180.02562 * 8 7 6 28 28 H 1.09001 * 109.47558 * 330.00204 * 10 9 8 29 29 H 1.08998 * 109.47216 * 209.99866 * 10 9 8 30 30 H 1.00901 * 110.99869 * 56.04737 * 11 10 9 31 31 H 1.09004 * 109.47031 * 299.99620 * 12 11 10 32 32 H 1.08995 * 109.47111 * 59.99900 * 12 11 10 33 33 H 0.97001 * 119.99132 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3507 1.5454 0.0005 5 8 4.0910 0.5815 0.0005 6 6 3.9130 2.9047 0.0000 7 7 3.2212 4.0125 -0.0015 8 6 3.9156 5.1192 -0.0022 9 6 5.2504 4.9713 -0.0008 10 6 6.2544 6.0951 -0.0019 11 7 6.5795 6.4626 1.3828 12 6 7.5574 7.5582 1.4210 13 6 7.8659 7.9063 2.8543 14 1 7.3836 7.3679 3.6567 15 6 8.7634 8.9130 3.1415 16 7 9.3504 9.5689 2.1643 17 14 9.1453 9.3450 4.9182 18 1 10.2913 8.5274 5.3910 19 1 9.4923 10.7857 5.0137 20 1 7.9561 9.0652 5.7623 21 16 5.6284 3.3029 -0.0049 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5140 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 3.4458 6.0917 -0.0030 28 1 5.8333 6.9582 -0.5175 29 1 7.1606 5.7723 -0.5144 30 1 6.9116 5.6628 1.9007 31 1 8.4727 7.2459 0.9182 32 1 7.1448 8.4312 0.9153 33 1 9.9820 10.2769 2.3664 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894082576.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:54 Heat of formation + Delta-G solvation = -63.102657 kcal Electronic energy + Delta-G solvation = -17174.905778 eV Core-core repulsion = 14133.815054 eV Total energy + Delta-G solvation = -3041.090724 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.69743 -40.67519 -37.84457 -37.35967 -34.77862 -32.90524 -32.11751 -29.40610 -27.75237 -25.15939 -24.50151 -23.42164 -23.17058 -21.32377 -19.34110 -18.83310 -18.16103 -17.81666 -17.76137 -16.73718 -16.24583 -15.93400 -15.70537 -15.24249 -14.98583 -14.60924 -14.59867 -14.03863 -13.63088 -13.52106 -13.21446 -13.00948 -12.72947 -12.62466 -12.55376 -12.37302 -12.14657 -12.06235 -11.59089 -11.38776 -11.09579 -10.72168 -10.65008 -10.06915 -9.24221 -8.23472 -6.33805 -1.09075 -0.22097 0.47451 0.89926 1.42547 1.43546 1.55148 1.57046 1.84201 2.40209 2.97461 3.10856 3.47979 3.75482 3.82563 4.00418 4.03291 4.04804 4.33101 4.59308 4.60917 4.73753 4.92227 4.97285 5.02627 5.05438 5.23704 5.31069 5.58689 5.97939 6.17445 6.32687 6.52126 6.58894 6.84333 7.36818 8.87717 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.039706 B = 0.003081 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.013490 B = 9086.677537 C = 9236.851520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.050 3.950 3 O -0.340 6.340 4 C 0.561 3.439 5 O -0.514 6.514 6 C -0.056 4.056 7 N -0.406 5.406 8 C 0.032 3.968 9 C -0.209 4.209 10 C 0.130 3.870 11 N -0.684 5.684 12 C 0.208 3.792 13 C -0.537 4.537 14 H 0.063 0.937 15 C 0.005 3.995 16 N -0.931 5.931 17 Si 0.970 3.030 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.266 1.266 21 S 0.301 5.699 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.107 0.893 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.197 0.803 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.335 0.665 31 H -0.030 1.030 32 H 0.011 0.989 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.641 -17.259 -6.338 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.023 4.023 3 O -0.256 6.256 4 C 0.402 3.598 5 O -0.403 6.403 6 C -0.325 4.325 7 N -0.124 5.124 8 C -0.126 4.126 9 C -0.333 4.333 10 C -0.001 4.001 11 N -0.315 5.315 12 C 0.081 3.919 13 C -0.575 4.575 14 H 0.081 0.919 15 C -0.194 4.194 16 N -0.571 5.571 17 Si 0.794 3.206 18 H -0.198 1.198 19 H -0.208 1.208 20 H -0.191 1.191 21 S 0.556 5.444 22 H 0.084 0.916 23 H 0.086 0.914 24 H 0.126 0.874 25 H 0.098 0.902 26 H 0.096 0.904 27 H 0.214 0.786 28 H 0.119 0.881 29 H 0.067 0.933 30 H 0.152 0.848 31 H -0.012 1.012 32 H 0.029 0.971 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.550 -17.723 -6.325 23.188 hybrid contribution 0.802 0.894 0.444 1.280 sum -12.748 -16.829 -5.881 21.916 Atomic orbital electron populations 1.21844 0.90247 1.04632 1.03669 1.23530 0.97231 0.78055 1.03466 1.86686 1.21342 1.34665 1.82901 1.19359 0.81741 0.86245 0.72451 1.90895 1.60999 1.41154 1.47232 1.26304 0.94902 0.94904 1.16431 1.66866 1.38135 0.97447 1.09977 1.21931 0.89373 0.98204 1.03114 1.26027 1.00107 1.00685 1.06474 1.20381 0.94221 0.93686 0.91814 1.60633 1.48139 1.11757 1.10952 1.19255 0.87456 0.88990 0.96202 1.21509 1.24280 1.18597 0.93117 0.91905 1.25877 0.95598 0.95859 1.02081 1.70067 1.29433 1.23912 1.33677 0.85377 0.78675 0.77336 0.79195 1.19770 1.20753 1.19087 1.83861 1.03609 0.96090 1.60850 0.91565 0.91376 0.87445 0.90211 0.90441 0.78637 0.88145 0.93348 0.84758 1.01191 0.97099 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 71.98 0.74 -0.84 16 2 C 0.05 0.82 6.20 71.98 0.45 1.27 16 3 O -0.34 -8.24 10.21 -57.35 -0.59 -8.82 16 4 C 0.56 15.17 7.95 70.15 0.56 15.73 16 5 O -0.51 -14.83 16.73 19.71 0.33 -14.50 16 6 C -0.06 -1.54 7.47 87.20 0.65 -0.89 16 7 N -0.41 -11.73 10.62 -190.41 -2.02 -13.75 16 8 C 0.03 0.87 11.13 83.97 0.93 1.80 16 9 C -0.21 -5.73 5.89 24.78 0.15 -5.58 16 10 C 0.13 4.05 6.17 85.55 0.53 4.58 16 11 N -0.68 -27.23 6.48 -521.98 -3.38 -30.61 16 12 C 0.21 10.47 5.44 85.56 0.47 10.94 16 13 C -0.54 -29.55 9.32 25.60 0.24 -29.31 16 14 H 0.06 3.39 7.81 -2.91 -0.02 3.37 16 15 C 0.00 0.25 5.46 84.66 0.46 0.71 16 16 N -0.93 -54.49 13.29 21.45 0.28 -54.20 16 17 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 20 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 21 S 0.30 7.52 23.00 -56.49 -1.30 6.22 16 22 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.20 4.69 8.06 -2.91 -0.02 4.66 16 28 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 30 H 0.34 12.85 8.72 -89.69 -0.78 12.07 16 31 H -0.03 -1.58 8.14 -2.39 -0.02 -1.60 16 32 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -64.55 312.66 0.87 -63.68 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 0.35 Total: 8.22 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: 5.17 Total: -1.60 kcal Atomic # 7 Polarization: -93.44 SS G_CDS: -5.12 Total: -98.56 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.26 Total: -23.32 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 7.52 SS G_CDS: -1.30 Total: 6.22 kcal Total: -64.55 0.87 -63.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894082576.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.579 kcal (2) G-P(sol) polarization free energy of solvation -64.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds