Wall clock time and date at job start Mon Mar 30 2020 02:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34878 * 116.99727 * 2 1 4 4 O 1.21613 * 119.99984 * 0.02562 * 3 2 1 5 5 C 1.46506 * 119.99893 * 179.97438 * 3 2 1 6 6 C 1.36756 * 126.17767 * 180.02562 * 5 3 2 7 7 N 1.30914 * 113.92944 * 180.02562 * 6 5 3 8 8 C 1.29391 * 117.46856 * 0.02562 * 7 6 5 9 9 C 1.50695 * 124.70401 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47608 * 90.01971 * 9 8 7 11 11 C 1.46900 * 111.00313 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47104 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47277 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99827 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99940 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00302 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99846 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46708 * 60.00170 * 17 15 13 19 19 H 1.48500 * 109.47184 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47573 * 300.00330 * 17 15 13 21 21 S 1.70923 * 110.58677 * 359.97438 * 8 7 6 22 22 H 1.08996 * 109.47192 * 299.99608 * 1 2 3 23 23 H 1.08998 * 109.47129 * 59.99544 * 1 2 3 24 24 H 1.09007 * 109.46498 * 179.97438 * 1 2 3 25 25 H 1.08001 * 123.03300 * 0.27068 * 6 5 3 26 26 H 1.09000 * 109.47224 * 210.01833 * 9 8 7 27 27 H 1.08999 * 109.47492 * 330.02206 * 9 8 7 28 28 H 1.00900 * 111.00167 * 303.95854 * 10 9 8 29 29 H 1.09001 * 109.46859 * 300.00127 * 11 10 9 30 30 H 1.08998 * 109.46973 * 60.00024 * 11 10 9 31 31 H 1.08995 * 109.47252 * 300.00471 * 12 11 10 32 32 H 1.09010 * 109.46895 * 60.00028 * 12 11 10 33 33 H 0.97006 * 119.99839 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4019 2.2217 0.0005 5 6 3.5274 1.2785 0.0006 6 6 4.2757 2.4232 0.0011 7 7 5.5678 2.2128 0.0010 8 6 5.9724 0.9838 -0.0001 9 6 7.4175 0.5562 -0.0009 10 7 7.8875 0.4157 1.3837 11 6 9.2955 -0.0015 1.4221 12 6 9.7477 -0.1375 2.8774 13 6 11.1919 -0.5662 2.9167 14 1 11.7332 -0.7253 1.9959 15 6 11.8221 -0.7552 4.1283 16 7 11.1627 -0.5620 5.2498 17 14 13.6120 -1.2873 4.1771 18 1 14.4495 -0.2701 3.4919 19 1 14.0510 -1.4191 5.5896 20 1 13.7588 -2.5947 3.4885 21 16 4.6405 -0.0874 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3632 -1.0278 -0.0005 25 1 3.8400 3.4114 0.0055 26 1 7.5133 -0.3997 -0.5158 27 1 8.0183 1.3071 -0.5140 28 1 7.7492 1.2709 1.9011 29 1 9.4038 -0.9614 0.9171 30 1 9.9095 0.7452 0.9187 31 1 9.6392 0.8221 3.3827 32 1 9.1335 -0.8845 3.3804 33 1 11.6061 -0.6954 6.1022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894446004.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:34 Heat of formation + Delta-G solvation = -45.257740 kcal Electronic energy + Delta-G solvation = -17085.738109 eV Core-core repulsion = 14045.421199 eV Total energy + Delta-G solvation = -3040.316910 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.71746 -39.72351 -36.74242 -36.16218 -33.17520 -31.53800 -29.81405 -28.13063 -26.89481 -24.51060 -23.27259 -22.46713 -20.71045 -19.78637 -18.85195 -17.18366 -17.04247 -16.72895 -16.37712 -15.58856 -15.03832 -14.69710 -14.52651 -14.15856 -13.86989 -13.68747 -13.31074 -12.64743 -12.46471 -12.24748 -12.10821 -11.70275 -11.16668 -11.14636 -11.03500 -10.94567 -10.61529 -10.12273 -9.92309 -9.76245 -9.50931 -9.26253 -9.08438 -8.38908 -8.07262 -6.02723 -4.06032 -0.10554 0.97590 1.45414 1.99900 2.32162 2.72573 3.31874 3.36600 3.38488 3.84540 4.41112 4.54070 4.70940 4.76472 4.79747 4.84713 4.96763 5.18979 5.33293 5.34504 5.53787 5.82059 5.92638 6.18638 6.25590 6.86116 7.23156 7.33211 7.39022 7.61488 7.68536 7.82738 8.01294 8.37366 9.00767 9.58051 11.08588 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.043533 B = 0.002877 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.042449 B = 9729.087331 C = 9914.634252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.355 6.355 3 C 0.552 3.448 4 O -0.500 6.500 5 C -0.318 4.318 6 C 0.144 3.856 7 N -0.482 5.482 8 C 0.074 3.926 9 C 0.124 3.876 10 N -0.685 5.685 11 C 0.066 3.934 12 C 0.026 3.974 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 S 0.249 5.751 22 H 0.066 0.934 23 H 0.065 0.935 24 H 0.105 0.895 25 H 0.189 0.811 26 H 0.096 0.904 27 H 0.065 0.935 28 H 0.345 0.655 29 H 0.063 0.937 30 H 0.022 0.978 31 H 0.015 0.985 32 H 0.026 0.974 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.622 0.899 -12.788 22.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.272 6.272 3 C 0.395 3.605 4 O -0.389 6.389 5 C -0.441 4.441 6 C -0.018 4.018 7 N -0.197 5.197 8 C -0.199 4.199 9 C -0.009 4.009 10 N -0.318 5.318 11 C -0.061 4.061 12 C -0.012 4.012 13 C -0.563 4.563 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.722 3.278 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 S 0.508 5.492 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.123 0.877 25 H 0.206 0.794 26 H 0.114 0.886 27 H 0.082 0.918 28 H 0.163 0.837 29 H 0.082 0.918 30 H 0.040 0.960 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.711 -0.237 -12.532 22.521 hybrid contribution 0.789 1.540 -0.069 1.731 sum -17.922 1.303 -12.601 21.947 Atomic orbital electron populations 1.23325 0.75348 1.04040 1.02810 1.86602 1.24045 1.31992 1.84520 1.19347 0.86549 0.81840 0.72737 1.90894 1.65823 1.35824 1.46385 1.24983 0.95451 0.98833 1.24842 1.22524 0.86550 0.99137 0.93596 1.66283 1.15090 1.20664 1.17654 1.27756 1.02594 0.91379 0.98139 1.20638 0.85084 1.01297 0.93845 1.60741 1.23342 1.38619 1.09101 1.22239 0.83349 0.98556 1.02002 1.19070 0.95738 0.97649 0.88735 1.21104 0.96351 1.46519 0.92312 0.92699 1.25002 0.98152 0.95464 0.95702 1.69962 1.36681 1.49129 0.97373 0.86630 0.85039 0.79191 0.76960 1.20264 1.21266 1.20188 1.84148 0.95016 1.08132 1.61913 0.91567 0.91667 0.87691 0.79434 0.88606 0.91758 0.83694 0.91832 0.95950 0.96664 0.95518 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.33 16 2 O -0.36 -3.72 10.46 -40.98 -0.43 -4.15 16 3 C 0.55 6.72 7.93 34.06 0.27 6.99 16 4 O -0.50 -6.93 16.67 -19.35 -0.32 -7.25 16 5 C -0.32 -3.84 6.52 -36.79 -0.24 -4.08 16 6 C 0.14 1.76 11.16 -18.48 -0.21 1.55 16 7 N -0.48 -6.55 10.50 -11.26 -0.12 -6.67 16 8 C 0.07 0.96 6.89 -13.31 -0.09 0.87 16 9 C 0.12 1.64 6.26 -4.98 -0.03 1.61 16 10 N -0.69 -11.48 6.49 -115.06 -0.75 -12.23 16 11 C 0.07 1.30 5.62 -3.82 -0.02 1.28 16 12 C 0.03 0.65 5.23 -27.88 -0.15 0.50 16 13 C -0.52 -14.53 9.11 -34.44 -0.31 -14.84 16 14 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 16 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 17 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 S 0.25 2.81 23.04 -107.50 -2.48 0.33 16 22 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.19 1.94 8.06 -52.49 -0.42 1.52 16 26 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.35 5.91 8.72 -39.29 -0.34 5.57 16 29 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 33 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 312.15 15.07 4.70 4.70 Total: -1.00 -31.62 312.15 -7.59 -39.21 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -4.11 Total: -1.17 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 0.19 Total: -3.23 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: -0.13 Total: -44.79 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -0.75 Total: -11.40 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 2.81 SS G_CDS: -2.48 Total: 0.33 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.62 -7.59 -39.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894446004.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.046 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds