Wall clock time and date at job start Mon Mar 30 2020 02:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34878 * 116.99727 * 2 1 4 4 O 1.21613 * 119.99984 * 0.02562 * 3 2 1 5 5 C 1.46506 * 119.99893 * 179.97438 * 3 2 1 6 6 C 1.36756 * 126.17767 * 180.02562 * 5 3 2 7 7 N 1.30914 * 113.92944 * 180.02562 * 6 5 3 8 8 C 1.29391 * 117.46856 * 0.02562 * 7 6 5 9 9 C 1.50695 * 124.70401 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.47608 * 90.01971 * 9 8 7 11 11 C 1.46900 * 111.00313 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47104 * 180.02562 * 11 10 9 13 13 C 1.50699 * 109.47277 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99827 * 0.02562 * 13 12 11 15 15 C 1.37872 * 119.99940 * 180.02562 * 13 12 11 16 16 N 1.31516 * 120.00302 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99846 * 179.97438 * 15 13 12 18 18 H 1.48507 * 109.46708 * 60.00170 * 17 15 13 19 19 H 1.48500 * 109.47184 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47573 * 300.00330 * 17 15 13 21 21 S 1.70923 * 110.58677 * 359.97438 * 8 7 6 22 22 H 1.08996 * 109.47192 * 299.99608 * 1 2 3 23 23 H 1.08998 * 109.47129 * 59.99544 * 1 2 3 24 24 H 1.09007 * 109.46498 * 179.97438 * 1 2 3 25 25 H 1.08001 * 123.03300 * 0.27068 * 6 5 3 26 26 H 1.09000 * 109.47224 * 210.01833 * 9 8 7 27 27 H 1.08999 * 109.47492 * 330.02206 * 9 8 7 28 28 H 1.00900 * 111.00167 * 303.95854 * 10 9 8 29 29 H 1.09001 * 109.46859 * 300.00127 * 11 10 9 30 30 H 1.08998 * 109.46973 * 60.00024 * 11 10 9 31 31 H 1.08995 * 109.47252 * 300.00471 * 12 11 10 32 32 H 1.09010 * 109.46895 * 60.00028 * 12 11 10 33 33 H 0.97006 * 119.99839 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0643 1.2018 0.0000 4 8 1.4019 2.2217 0.0005 5 6 3.5274 1.2785 0.0006 6 6 4.2757 2.4232 0.0011 7 7 5.5678 2.2128 0.0010 8 6 5.9724 0.9838 -0.0001 9 6 7.4175 0.5562 -0.0009 10 7 7.8875 0.4157 1.3837 11 6 9.2955 -0.0015 1.4221 12 6 9.7477 -0.1375 2.8774 13 6 11.1919 -0.5662 2.9167 14 1 11.7332 -0.7253 1.9959 15 6 11.8221 -0.7552 4.1283 16 7 11.1627 -0.5620 5.2498 17 14 13.6120 -1.2873 4.1771 18 1 14.4495 -0.2701 3.4919 19 1 14.0510 -1.4191 5.5896 20 1 13.7588 -2.5947 3.4885 21 16 4.6405 -0.0874 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3632 -1.0278 -0.0005 25 1 3.8400 3.4114 0.0055 26 1 7.5133 -0.3997 -0.5158 27 1 8.0183 1.3071 -0.5140 28 1 7.7492 1.2709 1.9011 29 1 9.4038 -0.9614 0.9171 30 1 9.9095 0.7452 0.9187 31 1 9.6392 0.8221 3.3827 32 1 9.1335 -0.8845 3.3804 33 1 11.6061 -0.6954 6.1022 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894446004.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:34 Heat of formation + Delta-G solvation = -67.170373 kcal Electronic energy + Delta-G solvation = -17086.688312 eV Core-core repulsion = 14045.421199 eV Total energy + Delta-G solvation = -3041.267113 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.62469 -40.67156 -37.72339 -37.47693 -35.12059 -32.86056 -31.22798 -29.13491 -27.99089 -26.05555 -24.55462 -23.43040 -22.47780 -20.71730 -19.82417 -18.49427 -18.10334 -17.95016 -17.56376 -16.87515 -16.43018 -16.16219 -15.69571 -15.28103 -14.99572 -14.77413 -14.31582 -14.09473 -13.96022 -13.57774 -13.13846 -12.91666 -12.79964 -12.59391 -12.46109 -12.03894 -11.90974 -11.89684 -11.44681 -11.31679 -10.88630 -10.70002 -10.53673 -10.09661 -9.42807 -8.18103 -6.29441 -1.06723 0.04422 0.50678 1.04111 1.43196 1.46020 1.52684 1.53829 1.77317 2.42638 2.86328 3.15944 3.43723 3.68590 3.79659 4.05982 4.26637 4.32035 4.32548 4.49116 4.59021 4.64211 4.69488 4.89482 5.08856 5.10549 5.45670 5.67390 5.76779 6.05054 6.19099 6.34843 6.44288 6.46892 6.88332 7.40064 8.93849 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.043533 B = 0.002877 C = 0.002823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.042449 B = 9729.087331 C = 9914.634252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.554 3.446 4 O -0.522 6.522 5 C -0.326 4.326 6 C 0.137 3.863 7 N -0.499 5.499 8 C 0.056 3.944 9 C 0.127 3.873 10 N -0.691 5.691 11 C 0.085 3.915 12 C 0.030 3.970 13 C -0.543 4.543 14 H 0.065 0.935 15 C -0.001 4.001 16 N -0.933 5.933 17 Si 0.966 3.034 18 H -0.267 1.267 19 H -0.286 1.286 20 H -0.265 1.265 21 S 0.294 5.706 22 H 0.065 0.935 23 H 0.069 0.931 24 H 0.136 0.864 25 H 0.201 0.799 26 H 0.117 0.883 27 H 0.070 0.930 28 H 0.341 0.659 29 H 0.073 0.927 30 H 0.028 0.972 31 H -0.012 1.012 32 H -0.003 1.003 33 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.569 -0.001 -14.098 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.275 6.275 3 C 0.398 3.602 4 O -0.413 6.413 5 C -0.449 4.449 6 C -0.025 4.025 7 N -0.215 5.215 8 C -0.216 4.216 9 C -0.005 4.005 10 N -0.323 5.323 11 C -0.043 4.043 12 C -0.008 4.008 13 C -0.581 4.581 14 H 0.083 0.917 15 C -0.199 4.199 16 N -0.573 5.573 17 Si 0.791 3.209 18 H -0.192 1.192 19 H -0.212 1.212 20 H -0.189 1.189 21 S 0.553 5.447 22 H 0.084 0.916 23 H 0.088 0.912 24 H 0.154 0.846 25 H 0.218 0.782 26 H 0.135 0.865 27 H 0.088 0.912 28 H 0.158 0.842 29 H 0.092 0.908 30 H 0.046 0.954 31 H 0.007 0.993 32 H 0.015 0.985 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.668 -1.155 -13.869 23.285 hybrid contribution 0.627 1.795 0.330 1.929 sum -18.042 0.640 -13.539 22.566 Atomic orbital electron populations 1.23674 0.73337 1.06226 1.03062 1.86592 1.26035 1.30930 1.83980 1.19373 0.86535 0.82067 0.72235 1.90879 1.66281 1.36604 1.47539 1.25145 0.95855 0.99357 1.24592 1.22726 0.86237 0.99916 0.93578 1.66286 1.15827 1.21302 1.18042 1.27676 1.02918 0.91867 0.99165 1.20678 0.85402 1.02731 0.91678 1.60611 1.21424 1.38654 1.11615 1.21842 0.85090 0.99423 0.97985 1.18929 0.94751 0.95060 0.92027 1.21598 0.97613 1.46108 0.92820 0.91676 1.25979 1.03088 0.95468 0.95323 1.70108 1.38783 1.50402 0.98039 0.85485 0.79131 0.79269 0.77053 1.19188 1.21157 1.18946 1.83947 0.93523 1.06730 1.60517 0.91571 0.91233 0.84576 0.78233 0.86485 0.91158 0.84191 0.90812 0.95393 0.99339 0.98496 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 113.37 1.20 1.55 16 2 O -0.36 -6.96 10.46 -57.92 -0.61 -7.56 16 3 C 0.55 12.94 7.93 69.98 0.55 13.49 16 4 O -0.52 -14.14 16.67 19.47 0.32 -13.81 16 5 C -0.33 -7.53 6.52 24.08 0.16 -7.38 16 6 C 0.14 3.25 11.16 84.48 0.94 4.19 16 7 N -0.50 -13.14 10.50 -189.54 -1.99 -15.13 16 8 C 0.06 1.37 6.89 88.47 0.61 1.98 16 9 C 0.13 3.15 6.26 85.56 0.54 3.69 16 10 N -0.69 -22.68 6.49 -517.94 -3.36 -26.04 16 11 C 0.09 3.28 5.62 86.30 0.49 3.77 16 12 C 0.03 1.54 5.23 29.85 0.16 1.70 16 13 C -0.54 -30.12 9.11 25.60 0.23 -29.89 16 14 H 0.07 3.40 7.74 -2.91 -0.02 3.37 16 15 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 16 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 17 Si 0.97 43.52 29.54 68.60 2.03 45.55 16 18 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 21 S 0.29 6.14 23.04 -56.49 -1.30 4.84 16 22 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 24 H 0.14 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.20 4.03 8.06 -2.91 -0.02 4.01 16 26 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.34 11.70 8.72 -89.69 -0.78 10.92 16 29 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 30 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 33 H 0.26 15.05 8.31 -92.70 -0.77 14.28 16 Total: -1.00 -67.78 312.15 1.06 -66.72 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: 0.35 Total: 8.26 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 5.33 Total: -6.47 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -5.07 Total: -97.53 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.28 Total: -21.38 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -1.30 Total: 4.84 kcal Total: -67.78 1.06 -66.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894446004.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.449 kcal (2) G-P(sol) polarization free energy of solvation -67.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds