Wall clock time and date at job start Mon Mar 30 2020 02:10:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42100 * 110.54584 * 2 1 4 4 O 1.42104 * 110.54118 * 223.24470 * 2 1 3 5 5 C 1.76203 * 104.45151 * 111.62410 * 2 1 3 6 6 C 1.39866 * 126.03826 * 269.69142 * 5 2 1 7 7 N 1.30845 * 108.20052 * 179.81414 * 6 5 2 8 8 N 1.40079 * 108.20516 * 0.43742 * 7 6 5 9 9 C 1.46503 * 126.03989 * 179.69533 * 8 7 6 10 10 C 1.52998 * 109.47080 * 303.02926 * 9 8 7 11 11 C 1.50702 * 115.54764 * 39.75028 * 10 9 8 12 12 H 1.07999 * 120.00423 * 274.01808 * 11 10 9 13 13 C 1.37885 * 119.99806 * 94.02817 * 11 10 9 14 14 N 1.31507 * 119.99835 * 174.27761 * 13 11 10 15 15 Si 1.86804 * 119.99660 * 354.26889 * 13 11 10 16 16 H 1.48504 * 109.46896 * 94.68192 * 15 13 11 17 17 H 1.48500 * 109.46791 * 214.67408 * 15 13 11 18 18 H 1.48497 * 109.47497 * 334.67992 * 15 13 11 19 19 C 1.52997 * 117.49862 * 254.04546 * 10 9 8 20 20 C 1.53001 * 117.49797 * 185.42248 * 10 9 8 21 21 C 1.34952 * 107.92464 * 359.72025 * 8 7 6 22 22 H 1.09004 * 109.47158 * 308.37737 * 1 2 3 23 23 H 1.09007 * 109.47210 * 68.37394 * 1 2 3 24 24 H 1.08998 * 109.47694 * 188.37648 * 1 2 3 25 25 H 1.07994 * 125.90136 * 359.97438 * 6 5 2 26 26 H 1.08997 * 109.46637 * 63.03070 * 9 8 7 27 27 H 1.09002 * 109.46972 * 183.02737 * 9 8 7 28 28 H 0.97008 * 119.99767 * 179.97438 * 14 13 11 29 29 H 1.08996 * 117.50033 * 0.02562 * 19 10 9 30 30 H 1.09003 * 117.50044 * 145.02169 * 19 10 9 31 31 H 1.09001 * 117.49658 * 214.98011 * 20 10 9 32 32 H 1.09001 * 117.49962 * 0.02562 * 20 10 9 33 33 H 1.07998 * 126.12512 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3125 -0.9693 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.4649 0.1295 2.7423 7 7 2.7698 -0.6881 3.7173 8 7 2.7719 -1.9935 3.2092 9 6 3.0693 -3.2124 3.9657 10 6 4.4584 -3.0952 4.5961 11 6 4.8064 -1.7394 5.1546 12 1 5.2264 -0.9814 4.5101 13 6 4.5888 -1.4668 6.4886 14 7 4.9950 -0.3259 7.0013 15 14 3.7169 -2.7180 7.5674 16 1 4.7239 -3.5600 8.2618 17 1 2.8853 -2.0099 8.5736 18 1 2.8485 -3.5786 6.7246 19 6 5.5896 -3.9134 3.9702 20 6 5.0090 -4.3223 5.3255 21 6 2.4522 -1.9300 1.8997 22 1 -0.3634 0.6380 0.8057 23 1 -0.3634 0.3788 -0.9554 24 1 -0.3634 -1.0166 0.1497 25 1 2.3871 1.2040 2.8179 26 1 2.3241 -3.3439 4.7502 27 1 3.0460 -4.0711 3.2948 28 1 4.8415 -0.1339 7.9398 29 1 5.3442 -4.5349 3.1091 30 1 6.5858 -3.4712 3.9622 31 1 5.6233 -4.1490 6.2091 32 1 4.3818 -5.2132 5.3558 33 1 2.3701 -2.7677 1.2230 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902874482.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:21 Heat of formation + Delta-G solvation = 45.460886 kcal Electronic energy + Delta-G solvation = -18828.640339 eV Core-core repulsion = 15792.257284 eV Total energy + Delta-G solvation = -3036.383055 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.70289 -37.20320 -36.79018 -35.66117 -32.33333 -32.02484 -30.00374 -29.37407 -26.76938 -25.40387 -21.85683 -21.37973 -21.00062 -19.25119 -18.46447 -17.54513 -16.22770 -15.99732 -15.49638 -15.29970 -15.06111 -14.49482 -14.16456 -13.41404 -13.27668 -13.19743 -12.95668 -12.66256 -12.48748 -12.34848 -11.86374 -11.75752 -11.32767 -11.23646 -10.86509 -10.79274 -10.60229 -10.36342 -9.86686 -9.70761 -9.25535 -9.00250 -8.73705 -8.59493 -8.42371 -6.08624 -4.07116 0.36443 2.10322 2.96346 3.01927 3.23316 3.30236 3.33915 3.37335 4.18832 4.29855 4.38684 4.67201 4.78825 4.84965 5.03878 5.12421 5.15125 5.50975 5.60753 5.64373 5.73340 5.89697 5.92453 6.04691 6.14500 6.28240 6.52035 6.75839 6.93850 7.02751 7.39521 7.66330 8.20865 8.48163 8.97828 9.53341 11.04044 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.029749 B = 0.005826 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.992234 B = 4804.810454 C = 5168.281354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.654 4.654 2 S 2.540 3.460 3 O -0.945 6.945 4 O -0.955 6.955 5 C -0.807 4.807 6 C 0.086 3.914 7 N -0.205 5.205 8 N -0.320 5.320 9 C 0.147 3.853 10 C -0.019 4.019 11 C -0.461 4.461 12 H 0.079 0.921 13 C 0.087 3.913 14 N -0.889 5.889 15 Si 0.880 3.120 16 H -0.282 1.282 17 H -0.295 1.295 18 H -0.266 1.266 19 C -0.179 4.179 20 C -0.191 4.191 21 C 0.147 3.853 22 H 0.129 0.871 23 H 0.122 0.878 24 H 0.126 0.874 25 H 0.187 0.813 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.263 0.737 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.075 0.925 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.385 -4.537 -10.694 15.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.803 4.803 2 S 2.719 3.281 3 O -0.943 6.943 4 O -0.952 6.952 5 C -0.909 4.909 6 C -0.105 4.105 7 N -0.023 5.023 8 N -0.095 5.095 9 C 0.026 3.974 10 C -0.021 4.021 11 C -0.499 4.499 12 H 0.097 0.903 13 C -0.116 4.116 14 N -0.525 5.525 15 Si 0.709 3.291 16 H -0.208 1.208 17 H -0.222 1.222 18 H -0.191 1.191 19 C -0.217 4.217 20 C -0.229 4.229 21 C -0.008 4.008 22 H 0.148 0.852 23 H 0.141 0.859 24 H 0.145 0.855 25 H 0.204 0.796 26 H 0.103 0.897 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.476 -4.415 -9.763 14.304 hybrid contribution -1.111 -0.923 0.596 1.563 sum -10.587 -5.338 -9.167 14.987 Atomic orbital electron populations 1.30288 1.27534 1.11512 1.11011 1.03740 0.76802 0.74162 0.73435 1.93544 1.77123 1.37003 1.86581 1.93527 1.77384 1.62159 1.62103 1.30745 1.35626 1.01672 1.22809 1.23620 0.97774 1.00138 0.88919 1.78204 1.17134 0.85996 1.20918 1.49211 1.46584 1.07492 1.06164 1.21877 1.00244 0.80415 0.94833 1.19675 0.88898 0.94011 0.99497 1.19964 1.41510 0.94080 0.94297 0.90342 1.24870 0.94343 0.94937 0.97496 1.69880 1.45611 1.23490 1.13562 0.86900 0.80180 0.81525 0.80464 1.20833 1.22182 1.19093 1.22980 1.00137 1.04061 0.94499 1.22941 1.04912 0.98417 0.96585 1.22330 0.94331 0.97183 0.86975 0.85197 0.85895 0.85537 0.79611 0.89653 0.90255 0.92687 0.90883 0.89164 0.88890 0.90653 0.80303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -4.89 10.79 101.05 1.09 -3.80 16 2 S 2.54 31.32 5.94 -107.50 -0.64 30.68 16 3 O -0.95 -14.97 17.74 -57.54 -1.02 -15.99 16 4 O -0.95 -14.25 17.72 -57.54 -1.02 -15.27 16 5 C -0.81 -12.50 5.83 -40.01 -0.23 -12.74 16 6 C 0.09 1.58 11.74 -17.36 -0.20 1.37 16 7 N -0.21 -4.53 10.30 30.62 0.32 -4.21 16 8 N -0.32 -6.15 3.58 -61.37 -0.22 -6.37 16 9 C 0.15 2.72 6.52 -4.04 -0.03 2.69 16 10 C -0.02 -0.42 1.23 -155.66 -0.19 -0.61 16 11 C -0.46 -12.38 7.09 -34.44 -0.24 -12.62 16 12 H 0.08 2.42 7.95 -52.49 -0.42 2.01 16 13 C 0.09 2.41 5.46 -17.82 -0.10 2.31 16 14 N -0.89 -26.66 13.96 55.43 0.77 -25.89 16 15 Si 0.88 21.05 24.88 -169.99 -4.23 16.82 16 16 H -0.28 -6.62 7.10 56.52 0.40 -6.22 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 H -0.27 -5.83 5.55 56.52 0.31 -5.52 16 19 C -0.18 -3.42 9.88 -26.73 -0.26 -3.68 16 20 C -0.19 -3.72 7.41 -26.73 -0.20 -3.92 16 21 C 0.15 2.30 11.12 -17.22 -0.19 2.11 16 22 H 0.13 0.86 8.14 -51.92 -0.42 0.43 16 23 H 0.12 0.69 8.14 -51.92 -0.42 0.27 16 24 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.19 2.97 8.06 -52.49 -0.42 2.55 16 26 H 0.09 1.58 6.83 -51.93 -0.35 1.23 16 27 H 0.08 1.13 7.87 -51.93 -0.41 0.72 16 28 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 29 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 30 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 31 H 0.09 1.96 6.78 -51.93 -0.35 1.61 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.18 2.05 8.06 -52.49 -0.42 1.63 16 LS Contribution 293.62 15.07 4.42 4.42 Total: -1.00 -36.09 293.62 -6.31 -42.40 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: -4.14 Total: 2.31 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: -0.56 Total: -28.89 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.87 Total: -36.47 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -2.04 Total: -31.26 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.23 Total: 16.82 kcal Atomic # 16 Polarization: 31.32 SS G_CDS: -0.64 Total: 30.68 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -36.09 -6.31 -42.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902874482.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.860 kcal (2) G-P(sol) polarization free energy of solvation -36.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds