Wall clock time and date at job start Mon Mar 30 2020 02:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81393 * 1 3 3 O 1.42100 * 110.54584 * 2 1 4 4 O 1.42104 * 110.54118 * 223.24470 * 2 1 3 5 5 C 1.76203 * 104.45151 * 111.62410 * 2 1 3 6 6 C 1.39866 * 126.03826 * 269.69142 * 5 2 1 7 7 N 1.30845 * 108.20052 * 179.81414 * 6 5 2 8 8 N 1.40079 * 108.20516 * 0.43742 * 7 6 5 9 9 C 1.46503 * 126.03989 * 179.69533 * 8 7 6 10 10 C 1.52998 * 109.47080 * 303.02926 * 9 8 7 11 11 C 1.50702 * 115.54764 * 39.75028 * 10 9 8 12 12 H 1.07999 * 120.00423 * 274.01808 * 11 10 9 13 13 C 1.37885 * 119.99806 * 94.02817 * 11 10 9 14 14 N 1.31507 * 119.99835 * 174.27761 * 13 11 10 15 15 Si 1.86804 * 119.99660 * 354.26889 * 13 11 10 16 16 H 1.48504 * 109.46896 * 94.68192 * 15 13 11 17 17 H 1.48500 * 109.46791 * 214.67408 * 15 13 11 18 18 H 1.48497 * 109.47497 * 334.67992 * 15 13 11 19 19 C 1.52997 * 117.49862 * 254.04546 * 10 9 8 20 20 C 1.53001 * 117.49797 * 185.42248 * 10 9 8 21 21 C 1.34952 * 107.92464 * 359.72025 * 8 7 6 22 22 H 1.09004 * 109.47158 * 308.37737 * 1 2 3 23 23 H 1.09007 * 109.47210 * 68.37394 * 1 2 3 24 24 H 1.08998 * 109.47694 * 188.37648 * 1 2 3 25 25 H 1.07994 * 125.90136 * 359.97438 * 6 5 2 26 26 H 1.08997 * 109.46637 * 63.03070 * 9 8 7 27 27 H 1.09002 * 109.46972 * 183.02737 * 9 8 7 28 28 H 0.97008 * 119.99767 * 179.97438 * 14 13 11 29 29 H 1.08996 * 117.50033 * 0.02562 * 19 10 9 30 30 H 1.09003 * 117.50044 * 145.02169 * 19 10 9 31 31 H 1.09001 * 117.49658 * 214.98011 * 20 10 9 32 32 H 1.09001 * 117.49962 * 0.02562 * 20 10 9 33 33 H 1.07998 * 126.12512 * 179.97438 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3125 -0.9693 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.4649 0.1295 2.7423 7 7 2.7698 -0.6881 3.7173 8 7 2.7719 -1.9935 3.2092 9 6 3.0693 -3.2124 3.9657 10 6 4.4584 -3.0952 4.5961 11 6 4.8064 -1.7394 5.1546 12 1 5.2264 -0.9814 4.5101 13 6 4.5888 -1.4668 6.4886 14 7 4.9950 -0.3259 7.0013 15 14 3.7169 -2.7180 7.5674 16 1 4.7239 -3.5600 8.2618 17 1 2.8853 -2.0099 8.5736 18 1 2.8485 -3.5786 6.7246 19 6 5.5896 -3.9134 3.9702 20 6 5.0090 -4.3223 5.3255 21 6 2.4522 -1.9300 1.8997 22 1 -0.3634 0.6380 0.8057 23 1 -0.3634 0.3788 -0.9554 24 1 -0.3634 -1.0166 0.1497 25 1 2.3871 1.2040 2.8179 26 1 2.3241 -3.3439 4.7502 27 1 3.0460 -4.0711 3.2948 28 1 4.8415 -0.1339 7.9398 29 1 5.3442 -4.5349 3.1091 30 1 6.5858 -3.4712 3.9622 31 1 5.6233 -4.1490 6.2091 32 1 4.3818 -5.2132 5.3558 33 1 2.3701 -2.7677 1.2230 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902874482.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:20 Heat of formation + Delta-G solvation = 16.154448 kcal Electronic energy + Delta-G solvation = -18829.911162 eV Core-core repulsion = 15792.257284 eV Total energy + Delta-G solvation = -3037.653878 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.04354 -38.79224 -37.88067 -36.75334 -34.19409 -33.62592 -31.27670 -30.08684 -28.29603 -27.27035 -23.38624 -22.62600 -22.43678 -20.87805 -19.62066 -18.90323 -17.87911 -17.11096 -16.88355 -16.53330 -16.35032 -16.07531 -15.61149 -14.84620 -14.76951 -14.35037 -14.00297 -13.82989 -13.79037 -13.68410 -13.07820 -12.97428 -12.86808 -12.71929 -12.46373 -12.14559 -12.01870 -11.75934 -11.64947 -11.16626 -10.95381 -10.73260 -10.36844 -10.30745 -9.85168 -8.20296 -6.21366 -0.55908 0.88568 1.32245 1.35493 1.45389 1.63310 1.73217 2.30313 2.39413 3.09889 3.19937 3.28124 3.32411 3.71266 3.92480 4.11649 4.18740 4.26398 4.28263 4.32553 4.38482 4.65796 4.69898 4.76309 4.81656 5.03229 5.08829 5.22352 5.43404 5.65102 5.69872 6.14667 6.38133 6.79231 6.85000 7.42445 8.97544 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.029749 B = 0.005826 C = 0.005416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.992234 B = 4804.810454 C = 5168.281354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.622 4.622 2 S 2.551 3.449 3 O -0.991 6.991 4 O -0.981 6.981 5 C -0.810 4.810 6 C 0.075 3.925 7 N -0.279 5.279 8 N -0.338 5.338 9 C 0.149 3.851 10 C -0.054 4.054 11 C -0.444 4.444 12 H 0.014 0.986 13 C 0.022 3.978 14 N -0.953 5.953 15 Si 0.941 3.059 16 H -0.274 1.274 17 H -0.310 1.310 18 H -0.225 1.225 19 C -0.166 4.166 20 C -0.180 4.180 21 C 0.154 3.846 22 H 0.144 0.856 23 H 0.153 0.847 24 H 0.154 0.846 25 H 0.192 0.808 26 H 0.083 0.917 27 H 0.136 0.864 28 H 0.259 0.741 29 H 0.117 0.883 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.210 -8.027 -12.773 20.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.776 4.776 2 S 2.731 3.269 3 O -0.988 6.988 4 O -0.978 6.978 5 C -0.908 4.908 6 C -0.115 4.115 7 N -0.096 5.096 8 N -0.113 5.113 9 C 0.029 3.971 10 C -0.055 4.055 11 C -0.482 4.482 12 H 0.033 0.967 13 C -0.174 4.174 14 N -0.593 5.593 15 Si 0.767 3.233 16 H -0.200 1.200 17 H -0.238 1.238 18 H -0.148 1.148 19 C -0.203 4.203 20 C -0.217 4.217 21 C 0.001 3.999 22 H 0.163 0.837 23 H 0.171 0.829 24 H 0.173 0.827 25 H 0.208 0.792 26 H 0.101 0.899 27 H 0.153 0.847 28 H 0.067 0.933 29 H 0.136 0.864 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.138 0.862 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -12.240 -7.948 -11.852 18.800 hybrid contribution -0.242 0.266 1.039 1.100 sum -12.481 -7.682 -10.813 18.213 Atomic orbital electron populations 1.30006 1.20043 1.14079 1.13441 1.03518 0.79369 0.72435 0.71548 1.93490 1.79997 1.38767 1.86521 1.93486 1.79904 1.62478 1.61976 1.31222 1.35014 1.01475 1.23090 1.23883 0.97160 1.00565 0.89866 1.78072 1.19758 0.88210 1.23597 1.49246 1.47945 1.06642 1.07501 1.21919 0.97140 0.81904 0.96185 1.19663 0.91870 0.91881 1.02127 1.19964 1.39502 0.95491 0.93283 0.96743 1.25735 0.95500 0.96899 0.99246 1.70077 1.48949 1.26629 1.13695 0.85915 0.79462 0.79426 0.78537 1.19974 1.23798 1.14766 1.23010 0.97991 1.03178 0.96145 1.23007 1.04460 0.98477 0.95770 1.23128 0.92111 0.98615 0.86033 0.83708 0.82909 0.82750 0.79153 0.89932 0.84668 0.93255 0.86447 0.91651 0.91173 0.86220 0.75623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.62 -6.23 10.79 113.37 1.22 -5.01 16 2 S 2.55 57.76 5.94 -56.49 -0.34 57.42 16 3 O -0.99 -31.19 17.74 -127.65 -2.26 -33.45 16 4 O -0.98 -26.97 17.72 -127.65 -2.26 -29.23 16 5 C -0.81 -24.11 5.83 21.99 0.13 -23.99 16 6 C 0.07 2.85 11.74 85.23 1.00 3.85 16 7 N -0.28 -12.70 10.30 -57.02 -0.59 -13.29 16 8 N -0.34 -12.48 3.58 -348.06 -1.25 -13.73 16 9 C 0.15 4.96 6.52 86.38 0.56 5.53 16 10 C -0.05 -2.24 1.23 -52.93 -0.07 -2.31 16 11 C -0.44 -24.89 7.09 25.60 0.18 -24.71 16 12 H 0.01 0.96 7.95 -2.91 -0.02 0.94 16 13 C 0.02 1.30 5.46 84.66 0.46 1.77 16 14 N -0.95 -61.22 13.96 21.45 0.30 -60.92 16 15 Si 0.94 43.80 24.88 68.60 1.71 45.50 16 16 H -0.27 -12.26 7.10 99.48 0.71 -11.56 16 17 H -0.31 -15.06 7.11 99.48 0.71 -14.35 16 18 H -0.23 -8.87 5.55 99.48 0.55 -8.32 16 19 C -0.17 -5.88 9.88 30.59 0.30 -5.57 16 20 C -0.18 -6.39 7.41 30.60 0.23 -6.16 16 21 C 0.15 4.40 11.12 83.54 0.93 5.32 16 22 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 23 H 0.15 0.83 8.14 -2.39 -0.02 0.81 16 24 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.19 6.57 8.06 -2.91 -0.02 6.54 16 26 H 0.08 2.75 6.83 -2.39 -0.02 2.73 16 27 H 0.14 2.95 7.87 -2.39 -0.02 2.93 16 28 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 29 H 0.12 3.13 8.08 -2.39 -0.02 3.11 16 30 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.07 2.83 6.78 -2.39 -0.02 2.81 16 32 H 0.12 3.24 8.14 -2.39 -0.02 3.23 16 33 H 0.23 3.99 8.06 -2.91 -0.02 3.96 16 Total: -1.00 -87.72 293.62 1.22 -86.50 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.96 Total: 12.48 kcal Atomic # 6 Polarization: -56.23 SS G_CDS: 4.95 Total: -51.28 kcal Atomic # 7 Polarization: -86.40 SS G_CDS: -1.53 Total: -87.94 kcal Atomic # 8 Polarization: -58.16 SS G_CDS: -4.53 Total: -62.69 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.71 Total: 45.50 kcal Atomic # 16 Polarization: 57.76 SS G_CDS: -0.34 Total: 57.42 kcal Total: -87.72 1.22 -86.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902874482.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.654 kcal (2) G-P(sol) polarization free energy of solvation -87.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds